Wall clock time and date at job start Tue Mar 31 2020 05:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47052 * 2 1 4 4 C 1.53000 * 109.47341 * 119.99767 * 2 1 3 5 5 H 1.09008 * 109.47019 * 300.00628 * 4 2 1 6 6 C 1.50701 * 109.46825 * 59.99749 * 4 2 1 7 7 C 1.38240 * 119.99957 * 49.84424 * 6 4 2 8 8 C 1.38227 * 120.00175 * 179.97438 * 7 6 4 9 9 C 1.38241 * 119.99960 * 359.95256 * 8 7 6 10 10 C 1.38227 * 120.00064 * 359.97438 * 9 8 7 11 11 C 1.38234 * 120.00110 * 229.81308 * 6 4 2 12 12 N 1.46497 * 109.47553 * 180.02562 * 4 2 1 13 13 C 1.34780 * 119.99966 * 118.95022 * 12 4 2 14 14 O 1.21280 * 119.99921 * 355.74199 * 13 12 4 15 15 C 1.50695 * 120.00111 * 175.73552 * 13 12 4 16 16 S 1.80997 * 109.47320 * 180.98479 * 15 13 12 17 17 C 1.76206 * 100.00116 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99641 * 0.02562 * 17 16 15 19 19 C 1.38791 * 119.99863 * 180.02562 * 17 16 15 20 20 N 1.31639 * 119.99943 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00517 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46899 * 89.99897 * 21 19 17 23 23 H 1.48495 * 109.47486 * 210.00263 * 21 19 17 24 24 H 1.48502 * 109.46844 * 330.00616 * 21 19 17 25 25 C 1.46495 * 119.99885 * 298.95687 * 12 4 2 26 26 C 1.53006 * 109.47298 * 130.63010 * 25 12 4 27 27 C 1.53004 * 109.46937 * 250.62566 * 25 12 4 28 28 H 1.08998 * 109.47628 * 299.99950 * 1 2 3 29 29 H 1.09004 * 109.46966 * 60.00078 * 1 2 3 30 30 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47628 * 240.00050 * 2 1 3 32 32 H 1.08999 * 109.47481 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47171 * 299.99796 * 3 2 1 34 34 H 1.09007 * 109.47407 * 59.99685 * 3 2 1 35 35 H 1.07998 * 119.99587 * 359.97239 * 7 6 4 36 36 H 1.07998 * 120.00057 * 179.97438 * 8 7 6 37 37 H 1.07998 * 119.99916 * 179.72226 * 9 8 7 38 38 H 1.07996 * 120.00531 * 179.97438 * 10 9 8 39 39 H 1.07998 * 120.00050 * 0.02562 * 11 6 4 40 40 H 1.09001 * 109.47052 * 300.98851 * 15 13 12 41 41 H 1.09003 * 109.46958 * 60.98096 * 15 13 12 42 42 H 0.96997 * 120.00135 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.47193 * 10.62871 * 25 12 4 44 44 H 1.09000 * 109.46889 * 90.35157 * 26 25 12 45 45 H 1.08992 * 109.47201 * 210.35657 * 26 25 12 46 46 H 1.09004 * 109.46574 * 330.35298 * 26 25 12 47 47 H 1.08997 * 109.46657 * 75.94770 * 27 25 12 48 48 H 1.09004 * 109.46710 * 195.94407 * 27 25 12 49 49 H 1.08996 * 109.47546 * 315.94442 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5376 -2.1420 1.2493 7 6 1.6903 -2.9291 0.1232 8 6 1.2300 -4.2325 0.1234 9 6 0.6178 -4.7492 1.2500 10 6 0.4664 -3.9626 2.3765 11 6 0.9247 -2.6584 2.3756 12 7 3.5050 -0.7207 1.2496 13 6 4.1784 -0.1185 2.2498 14 8 3.5741 0.4890 3.1081 15 6 5.6823 -0.2002 2.3018 16 16 6.2838 0.6762 3.7667 17 6 8.0184 0.4282 3.5809 18 1 8.3967 -0.1306 2.7376 19 6 8.8985 0.9509 4.5182 20 7 10.1944 0.7660 4.3791 21 14 8.2443 1.9179 5.9764 22 1 7.9810 0.9915 7.1067 23 1 9.2489 2.9304 6.3898 24 1 6.9828 2.6005 5.5917 25 6 4.2379 -1.3746 0.1627 26 6 5.3063 -0.4217 -0.3776 27 6 4.9076 -2.6447 0.6911 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 2.1692 -2.5257 -0.7567 36 1 1.3489 -4.8473 -0.7565 37 1 0.2541 -5.7661 1.2486 38 1 -0.0122 -4.3661 3.2566 39 1 0.8055 -2.0434 3.2554 40 1 5.9878 -1.2453 2.3526 41 1 6.1022 0.2580 1.4063 42 1 10.8095 1.1316 5.0339 43 1 3.5452 -1.6350 -0.6375 44 1 6.2371 -0.5720 0.1693 45 1 5.4703 -0.6225 -1.4362 46 1 4.9723 0.6081 -0.2505 47 1 4.1586 -3.4274 0.8108 48 1 5.6687 -2.9751 -0.0158 49 1 5.3727 -2.4364 1.6546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863947415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:09 Heat of formation + Delta-G solvation = -3.069160 kcal Electronic energy + Delta-G solvation = -28140.606943 eV Core-core repulsion = 24580.313335 eV Total energy + Delta-G solvation = -3560.293608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.166 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85464 -38.97138 -36.74943 -35.62713 -32.41695 -32.04195 -31.11675 -30.71190 -29.33358 -27.38297 -26.96418 -25.81749 -25.46854 -23.32331 -21.89529 -21.83793 -20.23672 -18.78944 -17.63636 -17.04413 -16.98045 -16.00444 -15.64725 -15.06072 -14.95887 -14.86740 -14.48302 -14.29760 -14.13082 -13.83355 -13.71352 -13.49244 -13.28119 -13.06764 -12.78153 -12.69376 -12.55970 -12.44725 -12.21457 -11.66759 -11.58039 -11.50364 -11.38030 -11.32109 -11.20166 -11.02422 -10.98539 -10.92319 -10.73622 -10.67861 -10.34360 -9.80751 -9.47289 -9.05293 -8.97623 -8.86754 -8.54525 -8.40313 -6.86935 -6.27052 -3.97880 1.15057 1.25333 2.76691 2.97882 3.20509 3.34540 3.52261 3.59665 3.74702 4.33840 4.35861 4.56282 4.68105 4.70379 4.79801 4.83962 4.88972 4.92622 5.02457 5.11019 5.12347 5.12973 5.23133 5.35743 5.40562 5.48949 5.50974 5.54682 5.63920 5.64372 5.74444 5.75845 5.81041 5.83047 5.86930 5.90565 5.95869 5.97876 5.98808 6.12873 6.20536 6.29821 6.35777 6.36208 6.38240 6.49460 6.72562 6.83639 7.54228 7.96068 8.43041 8.51104 9.19670 10.82183 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.003446 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.294064 B = 8123.001848 C = 8369.199034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.145 4.145 4 C 0.183 3.817 5 H 0.108 0.892 6 C -0.083 4.083 7 C -0.109 4.109 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.119 4.119 11 C -0.104 4.104 12 N -0.603 5.603 13 C 0.538 3.462 14 O -0.519 6.519 15 C -0.142 4.142 16 S -0.152 6.152 17 C -0.518 4.518 18 H 0.087 0.913 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.235 1.235 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.179 4.179 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.270 0.730 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.955 -8.491 -13.124 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.203 4.203 4 C 0.079 3.921 5 H 0.126 0.874 6 C -0.084 4.084 7 C -0.127 4.127 8 C -0.140 4.140 9 C -0.140 4.140 10 C -0.137 4.137 11 C -0.122 4.122 12 N -0.338 5.338 13 C 0.326 3.674 14 O -0.394 6.394 15 C -0.291 4.291 16 S 0.075 5.925 17 C -0.665 4.665 18 H 0.105 0.895 19 C -0.112 4.112 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.032 3.968 26 C -0.240 4.240 27 C -0.236 4.236 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.642 -7.549 -11.764 24.930 hybrid contribution 0.823 -0.499 -0.336 1.019 sum -19.819 -8.048 -12.100 24.576 Atomic orbital electron populations 1.21796 0.94462 1.01971 1.01945 1.21445 0.96091 0.96864 0.97419 1.21814 1.01736 0.95035 1.01683 1.19997 0.80197 0.91544 1.00317 0.87426 1.20068 0.98301 0.96031 0.94040 1.21111 0.99582 0.94088 0.97956 1.21106 0.99045 0.95545 0.98346 1.21135 0.99621 0.99671 0.93547 1.21139 1.00140 0.94140 0.98316 1.21130 0.97797 0.95634 0.97649 1.48127 1.04879 1.56435 1.24337 1.20228 0.89519 0.77430 0.80235 1.90668 1.69818 1.40848 1.38073 1.24161 0.93765 1.05808 1.05385 1.84770 1.06739 1.70645 1.30352 1.22292 0.88440 1.41002 1.14783 0.89483 1.24699 0.94092 0.94961 0.97496 1.69943 1.01451 1.44303 1.36129 0.86741 0.80848 0.81059 0.83238 1.19289 1.20028 1.15928 1.21126 0.93805 0.92626 0.89254 1.22731 0.99940 0.99937 1.01424 1.22534 1.01084 0.97126 1.02905 0.92456 0.92527 0.92399 0.91061 0.92218 0.92834 0.92356 0.86018 0.86239 0.86345 0.86152 0.85974 0.88009 0.86804 0.92002 0.89223 0.90101 0.91614 0.91433 0.92167 0.91394 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.95 37.16 0.33 -0.92 16 2 C -0.10 -0.98 2.07 -90.62 -0.19 -1.16 16 3 C -0.15 -1.61 9.04 37.16 0.34 -1.27 16 4 C 0.18 2.20 1.91 -69.08 -0.13 2.07 16 5 H 0.11 1.55 6.68 -51.92 -0.35 1.20 16 6 C -0.08 -0.91 3.73 -104.62 -0.39 -1.30 16 7 C -0.11 -1.02 6.67 -39.58 -0.26 -1.28 16 8 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 9 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 10 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 11 C -0.10 -1.15 9.67 -39.58 -0.38 -1.54 16 12 N -0.60 -8.15 1.48 -159.89 -0.24 -8.38 16 13 C 0.54 9.73 7.02 -10.99 -0.08 9.65 16 14 O -0.52 -11.16 15.20 5.56 0.08 -11.08 16 15 C -0.14 -2.79 4.10 36.00 0.15 -2.64 16 16 S -0.15 -3.87 18.55 -107.50 -1.99 -5.86 16 17 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 18 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 21 Si 0.86 21.95 27.74 -169.99 -4.71 17.23 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 C 0.14 1.49 2.06 -67.93 -0.14 1.35 16 26 C -0.18 -2.06 7.70 37.16 0.29 -1.77 16 27 C -0.18 -2.05 9.06 37.16 0.34 -1.71 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.50 7.07 -51.93 -0.37 0.14 16 31 H 0.07 0.64 5.87 -51.93 -0.30 0.33 16 32 H 0.06 0.74 6.24 -51.93 -0.32 0.42 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.12 0.98 4.89 -52.49 -0.26 0.73 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.38 7.97 -52.49 -0.42 0.96 16 40 H 0.10 1.93 5.25 -51.92 -0.27 1.65 16 41 H 0.11 2.09 4.64 -51.91 -0.24 1.85 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.09 0.81 4.16 -51.93 -0.22 0.59 16 44 H 0.08 1.05 5.38 -51.93 -0.28 0.77 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.83 6.29 -51.93 -0.33 0.50 16 47 H 0.06 0.67 6.94 -51.93 -0.36 0.31 16 48 H 0.07 0.67 8.04 -51.93 -0.42 0.26 16 49 H 0.07 1.02 4.79 -51.93 -0.25 0.77 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -32.86 380.98 -8.80 -41.66 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.34 Total: 3.42 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.11 Total: -16.88 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.54 Total: -34.24 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -1.99 Total: -5.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.86 -8.80 -41.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863947415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.588 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds