Wall clock time and date at job start Tue Mar 31 2020 07:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47301 * 2 1 4 4 C 1.50699 * 109.47468 * 180.02562 * 3 2 1 5 5 C 1.38270 * 119.94366 * 90.00233 * 4 3 2 6 6 C 1.38142 * 120.05325 * 180.02562 * 5 4 3 7 7 C 1.38731 * 119.94662 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.05486 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99761 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47097 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00125 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00111 * 179.97438 * 10 9 8 13 13 C 1.39240 * 119.99774 * 175.70313 * 12 10 9 14 14 C 1.39480 * 119.83063 * 215.01045 * 13 12 10 15 15 C 1.36380 * 120.16689 * 179.76563 * 14 13 12 16 16 C 1.40864 * 119.82418 * 0.51298 * 15 14 13 17 17 C 1.41163 * 120.16381 * 179.72017 * 16 15 14 18 18 H 1.07992 * 120.00227 * 214.80928 * 17 16 15 19 19 C 1.39910 * 119.99617 * 34.80277 * 17 16 15 20 20 N 1.30877 * 119.99766 * 355.56165 * 19 17 16 21 21 Si 1.86790 * 119.99902 * 175.56181 * 19 17 16 22 22 H 1.48501 * 109.47500 * 90.00199 * 21 19 17 23 23 H 1.48503 * 109.47354 * 210.00084 * 21 19 17 24 24 H 1.48506 * 109.47373 * 330.00063 * 21 19 17 25 25 C 1.40870 * 119.67643 * 359.74618 * 16 15 14 26 26 C 1.36374 * 119.82716 * 359.97438 * 25 16 15 27 27 C 1.38738 * 119.88600 * 0.27846 * 7 6 5 28 28 C 1.38145 * 119.94237 * 359.47224 * 27 7 6 29 29 H 1.09000 * 109.46591 * 299.99548 * 1 2 3 30 30 H 1.08997 * 109.47266 * 59.99334 * 1 2 3 31 31 H 1.08993 * 109.47069 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47090 * 240.00450 * 2 1 3 33 33 H 1.08996 * 109.47842 * 120.00173 * 2 1 3 34 34 H 1.09000 * 109.47276 * 59.99767 * 3 2 1 35 35 H 1.09009 * 109.47106 * 300.00680 * 3 2 1 36 36 H 1.07997 * 119.96843 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.02514 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.46812 * 299.99745 * 9 8 7 39 39 H 1.08992 * 109.47599 * 60.00053 * 9 8 7 40 40 H 0.97001 * 120.00038 * 355.70559 * 12 10 9 41 41 H 1.08000 * 119.91754 * 0.02953 * 14 13 12 42 42 H 1.07999 * 120.08748 * 180.26125 * 15 14 13 43 43 H 0.97001 * 119.99169 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.08424 * 179.97438 * 25 16 15 45 45 H 1.08002 * 119.91522 * 179.97438 * 26 25 16 46 46 H 1.08003 * 120.02267 * 179.71903 * 27 7 6 47 47 H 1.07999 * 119.96989 * 180.23360 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2367 1.4428 -1.1991 6 6 5.6181 1.4423 -1.2023 7 6 6.3135 1.4421 -0.0018 8 8 7.6724 1.4421 -0.0024 9 6 8.3217 1.4414 1.2706 10 6 9.8156 1.4422 1.0725 11 8 10.2788 1.4428 -0.0484 12 7 10.6371 1.4421 2.1411 13 6 12.0148 1.3525 1.9600 14 6 12.7918 0.6524 2.8828 15 6 14.1411 0.5562 2.7096 16 6 14.7510 1.1755 1.6011 17 6 16.1479 1.0855 1.4181 18 1 16.6913 1.9161 0.9926 19 6 16.8282 -0.0798 1.7880 20 7 16.1851 -1.0520 2.3830 21 14 18.6543 -0.2478 1.4326 22 1 19.4329 0.2750 2.5840 23 1 18.9874 -1.6791 1.2190 24 1 18.9945 0.5271 0.2123 25 6 13.9603 1.8854 0.6764 26 6 12.6115 1.9680 0.8598 27 6 5.6191 1.4365 1.1993 28 6 4.2376 1.4423 1.1971 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.6949 1.4434 -2.1333 37 1 6.1563 1.4421 -2.1386 38 1 8.0290 2.3310 1.8282 39 1 8.0292 0.5511 1.8272 40 1 10.2686 1.5045 3.0362 41 1 12.3231 0.1816 3.7344 42 1 14.7410 0.0102 3.4227 43 1 16.6567 -1.8600 2.6391 44 1 14.4211 2.3630 -0.1757 45 1 12.0040 2.5123 0.1519 46 1 6.1582 1.4318 2.1351 47 1 3.6967 1.4418 2.1319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000037202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:15 Heat of formation + Delta-G solvation = -38.952439 kcal Electronic energy + Delta-G solvation = -26865.631463 eV Core-core repulsion = 22977.881836 eV Total energy + Delta-G solvation = -3887.749627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.55201 -39.58250 -38.07738 -37.09864 -35.00084 -34.47701 -32.99701 -31.37780 -30.80868 -29.73514 -29.42961 -28.08714 -26.17459 -24.80820 -23.08978 -22.41946 -21.68037 -21.07227 -20.73968 -19.74630 -18.46350 -17.45235 -17.21974 -16.37802 -16.18747 -15.96259 -15.76328 -15.20270 -15.10493 -14.51885 -14.39362 -14.03071 -13.90270 -13.84735 -13.64493 -13.23307 -12.99828 -12.81969 -12.61312 -12.45809 -12.26193 -12.14794 -11.75282 -11.66872 -11.40929 -11.33309 -11.18981 -11.17821 -11.05235 -10.93264 -10.91523 -10.74223 -10.04968 -9.52909 -9.48321 -9.22961 -9.16357 -8.92602 -8.26024 -7.58107 -6.91337 -6.64380 -4.37069 1.11275 1.19485 2.45430 2.65969 2.96294 3.06125 3.09019 3.12963 3.29446 3.51159 3.86814 3.96825 4.45251 4.48248 4.59397 4.66799 4.69767 4.74921 4.80009 4.92690 4.96999 5.06608 5.07952 5.12314 5.33132 5.41328 5.45524 5.46475 5.62313 5.65979 5.74167 5.83349 5.92489 6.07006 6.13846 6.15214 6.39415 6.40869 6.53861 6.68560 6.86331 7.03404 7.15868 7.20158 7.27721 7.60659 7.68631 7.82507 8.03234 8.18291 8.28451 8.57280 8.65911 8.90192 8.96205 10.26686 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.036852 B = 0.001548 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.615563 B =18084.210033 C =18242.981972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.075 4.075 4 C -0.126 4.126 5 C -0.077 4.077 6 C -0.146 4.146 7 C 0.129 3.871 8 O -0.287 6.287 9 C 0.044 3.956 10 C 0.499 3.501 11 O -0.507 6.507 12 N -0.646 5.646 13 C 0.000 4.000 14 C -0.118 4.118 15 C -0.142 4.142 16 C 0.101 3.899 17 C -0.460 4.460 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.811 5.811 21 Si 0.916 3.084 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.205 4.205 26 C -0.084 4.084 27 C -0.209 4.209 28 C -0.077 4.077 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.397 0.603 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.278 0.722 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.128 0.872 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.726 2.615 0.977 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 C -0.126 4.126 5 C -0.095 4.095 6 C -0.165 4.165 7 C 0.084 3.916 8 O -0.199 6.199 9 C -0.035 4.035 10 C 0.284 3.716 11 O -0.381 6.381 12 N -0.291 5.291 13 C -0.091 4.091 14 C -0.138 4.138 15 C -0.161 4.161 16 C 0.098 3.902 17 C -0.491 4.491 18 H 0.095 0.905 19 C -0.146 4.146 20 N -0.438 5.438 21 Si 0.741 3.259 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.225 4.225 26 C -0.104 4.104 27 C -0.228 4.228 28 C -0.095 4.095 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.230 0.770 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.126 0.874 46 H 0.146 0.854 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.227 2.362 0.076 25.337 hybrid contribution 0.568 -0.292 0.594 0.872 sum -24.659 2.070 0.670 24.755 Atomic orbital electron populations 1.21792 0.95789 1.01693 1.01782 1.21535 0.95527 0.96271 1.02455 1.20552 0.90764 0.97194 1.02696 1.19779 0.95729 1.04025 0.93056 1.20830 0.92823 0.98085 0.97786 1.20469 0.93706 1.05754 0.96562 1.19116 0.82223 0.95941 0.94360 1.86190 1.15946 1.88199 1.29547 1.22496 0.91934 1.03429 0.85632 1.19939 0.87156 0.78761 0.85792 1.90742 1.76609 1.47232 1.23554 1.42781 1.05857 1.72362 1.08117 1.17224 0.80024 1.09448 1.02447 1.20304 0.95006 0.99841 0.98697 1.21193 0.92604 1.03351 0.99000 1.17745 0.93475 0.89659 0.89297 1.19516 0.92599 1.00504 1.36439 0.90546 1.25890 1.00483 0.95360 0.92837 1.69762 1.37499 1.05650 1.30905 0.86184 0.81819 0.78157 0.79755 1.19504 1.20280 1.18691 1.20815 0.92710 1.08549 1.00436 1.20411 0.94717 0.98646 0.96657 1.21269 0.95461 1.09027 0.97024 1.20789 0.93145 0.97886 0.97670 0.92757 0.92720 0.92716 0.91835 0.91903 0.91238 0.91178 0.85476 0.84951 0.89302 0.89165 0.76974 0.88996 0.84960 0.91104 0.88489 0.87444 0.85385 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 3 C -0.07 -0.47 5.34 -27.88 -0.15 -0.62 16 4 C -0.13 -1.07 5.13 -104.60 -0.54 -1.61 16 5 C -0.08 -0.71 9.69 -39.60 -0.38 -1.09 16 6 C -0.15 -1.65 9.99 -39.43 -0.39 -2.04 16 7 C 0.13 1.60 6.69 -39.21 -0.26 1.33 16 8 O -0.29 -4.26 9.67 -39.32 -0.38 -4.64 16 9 C 0.04 0.54 5.22 36.01 0.19 0.73 16 10 C 0.50 8.69 7.74 -10.98 -0.08 8.60 16 11 O -0.51 -11.40 13.92 -14.36 -0.20 -11.60 16 12 N -0.65 -10.93 5.30 -9.74 -0.05 -10.98 16 13 C 0.00 0.01 6.31 -83.57 -0.53 -0.52 16 14 C -0.12 -2.65 9.90 -39.79 -0.39 -3.04 16 15 C -0.14 -3.60 8.62 -39.26 -0.34 -3.94 16 16 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 17 C -0.46 -12.24 9.03 -37.85 -0.34 -12.58 16 18 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 19 C 0.07 1.75 5.42 -17.33 -0.09 1.66 16 20 N -0.81 -21.00 10.60 55.55 0.59 -20.41 16 21 Si 0.92 18.95 29.56 -169.99 -5.03 13.93 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 25 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 26 C -0.08 -2.03 8.61 -39.79 -0.34 -2.37 16 27 C -0.21 -2.08 9.04 -39.43 -0.36 -2.44 16 28 C -0.08 -0.67 9.69 -39.61 -0.38 -1.05 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.07 0.40 8.08 -51.92 -0.42 -0.02 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.09 0.82 7.67 -51.93 -0.40 0.43 16 39 H 0.09 0.88 7.65 -51.93 -0.40 0.48 16 40 H 0.40 4.91 8.82 -40.82 -0.36 4.55 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 43 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 44 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 45 H 0.11 2.57 6.22 -52.49 -0.33 2.24 16 46 H 0.13 1.02 6.30 -52.48 -0.33 0.69 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 394.01 15.07 5.94 5.94 Total: -1.00 -31.89 394.01 -11.04 -42.94 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.75 Total: 8.57 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -5.17 Total: -23.74 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.54 Total: -31.39 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.58 Total: -16.23 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.89 -11.04 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.983 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds