Wall clock time and date at job start Tue Mar 31 2020 07:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47301 * 2 1 4 4 C 1.50699 * 109.47468 * 180.02562 * 3 2 1 5 5 C 1.38270 * 119.94366 * 90.00233 * 4 3 2 6 6 C 1.38142 * 120.05325 * 180.02562 * 5 4 3 7 7 C 1.38731 * 119.94662 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.05486 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99761 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47097 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00125 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00111 * 179.97438 * 10 9 8 13 13 C 1.39240 * 119.99774 * 175.70313 * 12 10 9 14 14 C 1.39480 * 119.83063 * 215.01045 * 13 12 10 15 15 C 1.36380 * 120.16689 * 179.76563 * 14 13 12 16 16 C 1.40864 * 119.82418 * 0.51298 * 15 14 13 17 17 C 1.41163 * 120.16381 * 179.72017 * 16 15 14 18 18 H 1.07992 * 120.00227 * 214.80928 * 17 16 15 19 19 C 1.39910 * 119.99617 * 34.80277 * 17 16 15 20 20 N 1.30877 * 119.99766 * 355.56165 * 19 17 16 21 21 Si 1.86790 * 119.99902 * 175.56181 * 19 17 16 22 22 H 1.48501 * 109.47500 * 90.00199 * 21 19 17 23 23 H 1.48503 * 109.47354 * 210.00084 * 21 19 17 24 24 H 1.48506 * 109.47373 * 330.00063 * 21 19 17 25 25 C 1.40870 * 119.67643 * 359.74618 * 16 15 14 26 26 C 1.36374 * 119.82716 * 359.97438 * 25 16 15 27 27 C 1.38738 * 119.88600 * 0.27846 * 7 6 5 28 28 C 1.38145 * 119.94237 * 359.47224 * 27 7 6 29 29 H 1.09000 * 109.46591 * 299.99548 * 1 2 3 30 30 H 1.08997 * 109.47266 * 59.99334 * 1 2 3 31 31 H 1.08993 * 109.47069 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47090 * 240.00450 * 2 1 3 33 33 H 1.08996 * 109.47842 * 120.00173 * 2 1 3 34 34 H 1.09000 * 109.47276 * 59.99767 * 3 2 1 35 35 H 1.09009 * 109.47106 * 300.00680 * 3 2 1 36 36 H 1.07997 * 119.96843 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.02514 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.46812 * 299.99745 * 9 8 7 39 39 H 1.08992 * 109.47599 * 60.00053 * 9 8 7 40 40 H 0.97001 * 120.00038 * 355.70559 * 12 10 9 41 41 H 1.08000 * 119.91754 * 0.02953 * 14 13 12 42 42 H 1.07999 * 120.08748 * 180.26125 * 15 14 13 43 43 H 0.97001 * 119.99169 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.08424 * 179.97438 * 25 16 15 45 45 H 1.08002 * 119.91522 * 179.97438 * 26 25 16 46 46 H 1.08003 * 120.02267 * 179.71903 * 27 7 6 47 47 H 1.07999 * 119.96989 * 180.23360 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2367 1.4428 -1.1991 6 6 5.6181 1.4423 -1.2023 7 6 6.3135 1.4421 -0.0018 8 8 7.6724 1.4421 -0.0024 9 6 8.3217 1.4414 1.2706 10 6 9.8156 1.4422 1.0725 11 8 10.2788 1.4428 -0.0484 12 7 10.6371 1.4421 2.1411 13 6 12.0148 1.3525 1.9600 14 6 12.7918 0.6524 2.8828 15 6 14.1411 0.5562 2.7096 16 6 14.7510 1.1755 1.6011 17 6 16.1479 1.0855 1.4181 18 1 16.6913 1.9161 0.9926 19 6 16.8282 -0.0798 1.7880 20 7 16.1851 -1.0520 2.3830 21 14 18.6543 -0.2478 1.4326 22 1 19.4329 0.2750 2.5840 23 1 18.9874 -1.6791 1.2190 24 1 18.9945 0.5271 0.2123 25 6 13.9603 1.8854 0.6764 26 6 12.6115 1.9680 0.8598 27 6 5.6191 1.4365 1.1993 28 6 4.2376 1.4423 1.1971 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.6949 1.4434 -2.1333 37 1 6.1563 1.4421 -2.1386 38 1 8.0290 2.3310 1.8282 39 1 8.0292 0.5511 1.8272 40 1 10.2686 1.5045 3.0362 41 1 12.3231 0.1816 3.7344 42 1 14.7410 0.0102 3.4227 43 1 16.6567 -1.8600 2.6391 44 1 14.4211 2.3630 -0.1757 45 1 12.0040 2.5123 0.1519 46 1 6.1582 1.4318 2.1351 47 1 3.6967 1.4418 2.1319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000037202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:14 Heat of formation + Delta-G solvation = -54.846475 kcal Electronic energy + Delta-G solvation = -26866.320680 eV Core-core repulsion = 22977.881836 eV Total energy + Delta-G solvation = -3888.438844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.61619 -40.83969 -39.26501 -38.55189 -36.21126 -35.53671 -34.77977 -32.14563 -31.61441 -31.47133 -31.01021 -29.40201 -26.94467 -26.41030 -23.99646 -23.41882 -22.98826 -22.54978 -21.63240 -21.23906 -19.39754 -19.25333 -18.66892 -17.69107 -17.41207 -17.00775 -16.87248 -16.44722 -15.89682 -15.75230 -15.58604 -15.33179 -15.02795 -14.84850 -14.48903 -14.40442 -14.31556 -14.03127 -13.84968 -13.62529 -13.54169 -13.26170 -13.19483 -12.86834 -12.79034 -12.75894 -12.49419 -12.23844 -11.91777 -11.86957 -11.76295 -11.64121 -11.43926 -11.41532 -11.23802 -10.85261 -10.63926 -9.94496 -9.49191 -9.03381 -8.77464 -8.52361 -6.35274 0.39999 0.44634 0.74017 1.11349 1.39342 1.41735 1.52376 1.54627 1.73227 2.23548 2.71218 2.78712 2.80013 3.56083 3.67201 3.88503 3.90319 3.93486 4.05384 4.09351 4.20699 4.30412 4.38012 4.44596 4.48218 4.49957 4.58765 4.71296 4.84436 4.90962 4.96249 5.06256 5.10079 5.10759 5.12221 5.24206 5.30141 5.32005 5.37411 5.40091 5.41176 5.51096 5.67352 5.73769 5.83499 5.87853 5.99224 6.11051 6.36290 6.38924 6.63344 6.66639 6.94896 6.97115 7.28990 8.40464 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.036852 B = 0.001548 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.615563 B =18084.210033 C =18242.981972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.072 4.072 4 C -0.124 4.124 5 C -0.081 4.081 6 C -0.168 4.168 7 C 0.102 3.898 8 O -0.324 6.324 9 C 0.054 3.946 10 C 0.497 3.503 11 O -0.564 6.564 12 N -0.634 5.634 13 C 0.017 3.983 14 C -0.114 4.114 15 C -0.159 4.159 16 C 0.068 3.932 17 C -0.498 4.498 18 H 0.072 0.928 19 C 0.029 3.971 20 N -0.840 5.840 21 Si 0.988 3.012 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.264 1.264 25 C -0.223 4.223 26 C -0.098 4.098 27 C -0.208 4.208 28 C -0.080 4.080 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.423 0.577 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.285 0.715 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.152 0.848 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.313 2.355 2.801 28.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.109 4.109 4 C -0.124 4.124 5 C -0.099 4.099 6 C -0.187 4.187 7 C 0.057 3.943 8 O -0.237 6.237 9 C -0.024 4.024 10 C 0.284 3.716 11 O -0.442 6.442 12 N -0.281 5.281 13 C -0.076 4.076 14 C -0.134 4.134 15 C -0.179 4.179 16 C 0.066 3.934 17 C -0.529 4.529 18 H 0.090 0.910 19 C -0.183 4.183 20 N -0.467 5.467 21 Si 0.809 3.191 22 H -0.183 1.183 23 H -0.194 1.194 24 H -0.188 1.188 25 C -0.243 4.243 26 C -0.118 4.118 27 C -0.226 4.226 28 C -0.097 4.097 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.262 0.738 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.122 0.878 46 H 0.169 0.831 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.871 2.113 1.948 28.019 hybrid contribution 1.116 -0.182 0.009 1.131 sum -26.754 1.931 1.957 26.895 Atomic orbital electron populations 1.21777 0.94945 1.01929 1.02253 1.21509 0.96241 0.95936 1.01954 1.20587 0.89109 0.97533 1.03681 1.20116 0.97014 1.02489 0.92789 1.21060 0.92041 0.97629 0.99139 1.20625 0.94772 1.06984 0.96335 1.19336 0.81288 0.98064 0.95624 1.86121 1.17555 1.89120 1.30945 1.22528 0.87507 1.06806 0.85573 1.20906 0.89466 0.76556 0.84653 1.90726 1.78084 1.49550 1.25890 1.42639 1.03800 1.71880 1.09827 1.17275 0.82507 1.07036 1.00771 1.20577 0.94004 0.99073 0.99705 1.21191 0.94016 1.03954 0.98699 1.18056 0.94164 0.90886 0.90296 1.19737 0.93157 1.01526 1.38434 0.90980 1.26730 1.05026 0.94433 0.92147 1.69818 1.39322 1.06164 1.31443 0.85105 0.75957 0.78346 0.79675 1.18260 1.19366 1.18815 1.20923 0.93558 1.09166 1.00614 1.20519 0.94220 0.99390 0.97695 1.21531 0.96084 1.08116 0.96912 1.21155 0.92910 0.96869 0.98807 0.92162 0.92385 0.92649 0.92595 0.92201 0.90025 0.90480 0.83793 0.86037 0.85459 0.85758 0.73830 0.85157 0.86117 0.90398 0.88781 0.87768 0.83061 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 71.98 0.71 -0.45 16 2 C -0.12 -1.16 5.92 30.60 0.18 -0.98 16 3 C -0.07 -0.70 5.34 29.85 0.16 -0.54 16 4 C -0.12 -1.81 5.13 -19.85 -0.10 -1.91 16 5 C -0.08 -1.38 9.69 22.25 0.22 -1.17 16 6 C -0.17 -3.80 9.99 22.36 0.22 -3.58 16 7 C 0.10 2.40 6.69 22.51 0.15 2.55 16 8 O -0.32 -9.37 9.67 -73.34 -0.71 -10.08 16 9 C 0.05 1.18 5.22 71.24 0.37 1.55 16 10 C 0.50 16.61 7.74 87.66 0.68 17.29 16 11 O -0.56 -25.73 13.92 15.99 0.22 -25.51 16 12 N -0.63 -20.02 5.30 -303.10 -1.61 -21.63 16 13 C 0.02 0.75 6.31 38.56 0.24 1.00 16 14 C -0.11 -4.98 9.90 22.14 0.22 -4.76 16 15 C -0.16 -8.22 8.62 22.48 0.19 -8.02 16 16 C 0.07 3.80 5.55 -21.27 -0.12 3.68 16 17 C -0.50 -27.59 9.03 23.39 0.21 -27.38 16 18 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 19 C 0.03 1.48 5.42 85.24 0.46 1.94 16 20 N -0.84 -44.28 10.60 21.82 0.23 -44.05 16 21 Si 0.99 39.30 29.56 68.60 2.03 41.33 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 25 C -0.22 -11.83 9.74 22.48 0.22 -11.61 16 26 C -0.10 -4.84 8.61 22.13 0.19 -4.65 16 27 C -0.21 -3.53 9.04 22.37 0.20 -3.33 16 28 C -0.08 -1.13 9.69 22.25 0.22 -0.92 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 35 H 0.08 0.67 8.08 -2.38 -0.02 0.65 16 36 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.12 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.13 1.82 7.67 -2.38 -0.02 1.80 16 39 H 0.12 1.89 7.65 -2.39 -0.02 1.88 16 40 H 0.42 8.87 8.82 -92.71 -0.82 8.05 16 41 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.12 6.49 6.13 -2.91 -0.02 6.47 16 43 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 44 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 45 H 0.10 5.16 6.22 -2.91 -0.02 5.15 16 46 H 0.15 1.72 6.30 -2.91 -0.02 1.71 16 47 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -73.68 394.01 4.96 -68.71 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.17 Total: 32.52 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 4.63 Total: -41.29 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -1.38 Total: -65.68 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.49 Total: -35.59 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -73.68 4.96 -68.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.868 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds