Wall clock time and date at job start Tue Mar 31 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.52994 * 109.47204 * 239.99979 * 2 1 3 5 5 C 1.50706 * 109.46840 * 119.99887 * 2 1 3 6 6 C 1.38281 * 119.92939 * 60.00200 * 5 2 1 7 7 C 1.38111 * 120.06845 * 180.02562 * 6 5 2 8 8 C 1.38867 * 119.92982 * 359.97438 * 7 6 5 9 9 N 1.39931 * 120.06840 * 179.97438 * 8 7 6 10 10 C 1.34783 * 119.99961 * 144.89734 * 9 8 7 11 11 O 1.21583 * 120.00036 * 4.06047 * 10 9 8 12 12 N 1.34773 * 119.99765 * 184.06021 * 10 9 8 13 13 C 1.39227 * 119.99689 * 184.26940 * 12 10 9 14 14 C 1.39492 * 119.83366 * 144.42138 * 13 12 10 15 15 C 1.36370 * 120.16498 * 179.75797 * 14 13 12 16 16 C 1.40868 * 119.83146 * 0.51331 * 15 14 13 17 17 C 1.41150 * 120.16336 * 179.71591 * 16 15 14 18 18 H 1.08005 * 120.00051 * 214.27798 * 17 16 15 19 19 C 1.39896 * 120.00021 * 34.28375 * 17 16 15 20 20 N 1.30876 * 119.99825 * 5.54272 * 19 17 16 21 21 Si 1.86798 * 120.00085 * 185.53791 * 19 17 16 22 22 H 1.48506 * 109.47259 * 90.00038 * 21 19 17 23 23 H 1.48498 * 109.47221 * 210.00022 * 21 19 17 24 24 H 1.48500 * 109.47160 * 329.99937 * 21 19 17 25 25 C 1.40875 * 119.67254 * 359.74079 * 16 15 14 26 26 C 1.36368 * 119.82547 * 0.02562 * 25 16 15 27 27 C 1.38874 * 119.86053 * 0.25250 * 8 7 6 28 28 C 1.38111 * 119.92784 * 359.53898 * 27 8 7 29 29 H 1.08997 * 109.46973 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.46614 * 59.99611 * 1 2 3 31 31 H 1.08991 * 109.46825 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47117 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47352 * 300.00005 * 3 2 1 34 34 H 1.09006 * 109.47320 * 60.00010 * 3 2 1 35 35 H 1.09007 * 109.47270 * 300.00034 * 4 2 1 36 36 H 1.08994 * 109.47468 * 60.00128 * 4 2 1 37 37 H 1.08999 * 109.47183 * 180.02562 * 4 2 1 38 38 H 1.08001 * 119.96387 * 359.97438 * 6 5 2 39 39 H 1.07997 * 120.03387 * 179.97438 * 7 6 5 40 40 H 0.97002 * 120.00200 * 324.62220 * 9 8 7 41 41 H 0.97001 * 120.00550 * 4.27144 * 12 10 9 42 42 H 1.07994 * 119.91342 * 359.97438 * 14 13 12 43 43 H 1.08003 * 120.08469 * 180.23234 * 15 14 13 44 44 H 0.97000 * 119.99801 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.08082 * 179.97438 * 25 16 15 46 46 H 1.08000 * 119.91147 * 179.97438 * 26 25 16 47 47 H 1.08000 * 120.03175 * 179.72594 * 27 8 7 48 48 H 1.08001 * 119.96345 * 180.18790 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.6974 -2.0343 1.4479 7 6 2.1557 -2.6880 2.5749 8 6 2.9541 -2.0145 3.4900 9 7 3.4196 -2.6738 4.6331 10 6 4.6423 -2.3899 5.1238 11 8 5.3110 -1.5094 4.6181 12 7 5.1238 -3.0822 6.1752 13 6 6.3477 -2.7309 6.7383 14 6 6.5354 -2.8429 8.1160 15 6 7.7330 -2.5053 8.6741 16 6 8.7784 -2.0323 7.8570 17 6 10.0189 -1.6752 8.4280 18 1 10.5900 -0.8585 8.0116 19 6 10.5087 -2.3793 9.5333 20 7 9.8720 -3.4357 9.9707 21 14 12.0714 -1.8115 10.3846 22 1 11.7265 -0.8504 11.4630 23 1 12.7695 -2.9837 10.9709 24 1 12.9605 -1.1490 9.3968 25 6 8.5796 -1.9169 6.4671 26 6 7.3780 -2.2628 5.9229 27 6 3.2848 -0.6836 3.2712 28 6 2.8269 -0.0368 2.1400 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7216 -1.2489 38 1 1.0761 -2.5574 0.7360 39 1 1.8934 -3.7219 2.7443 40 1 2.8607 -3.3323 5.0746 41 1 4.6178 -3.8252 6.5395 42 1 5.7313 -3.2011 8.7417 43 1 7.8781 -2.5960 9.7405 44 1 10.2114 -3.9237 10.7373 45 1 9.3764 -1.5546 5.8345 46 1 7.2239 -2.1745 4.8576 47 1 3.9019 -0.1558 3.9833 48 1 3.0863 0.9974 1.9678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000148591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:17 Heat of formation + Delta-G solvation = 10.629941 kcal Electronic energy + Delta-G solvation = -27697.175945 eV Core-core repulsion = 23909.295033 eV Total energy + Delta-G solvation = -3787.880912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.66306 -39.51634 -37.70680 -36.50370 -34.46627 -34.08127 -32.84897 -31.12072 -29.65397 -29.25435 -28.25301 -27.57241 -27.47590 -25.00864 -23.11654 -22.53680 -21.63430 -20.87167 -20.11487 -19.36601 -18.15197 -17.72774 -17.24947 -16.27282 -15.67074 -15.38382 -15.13579 -14.77063 -14.47668 -14.45045 -14.22951 -13.91809 -13.78319 -13.38297 -13.09606 -12.89858 -12.87500 -12.64845 -12.33763 -12.15083 -12.07727 -11.91397 -11.78017 -11.58620 -11.48636 -11.20264 -11.15711 -10.97288 -10.85493 -10.70457 -10.54484 -10.17651 -10.00991 -9.84513 -9.45968 -9.19389 -8.88758 -8.77526 -7.96071 -7.55637 -6.89769 -6.66959 -4.32032 1.31955 1.45330 2.60817 2.90016 3.07282 3.10221 3.12416 3.14994 3.51060 3.86878 3.97936 4.42994 4.48969 4.55507 4.69981 4.79255 4.95442 5.01049 5.11685 5.33376 5.37555 5.39109 5.53014 5.57635 5.60892 5.64150 5.66254 5.72750 5.77091 5.84617 5.99879 6.06746 6.08113 6.16556 6.33507 6.36468 6.43255 6.60025 6.66305 6.72997 6.82235 7.02733 7.12666 7.14418 7.23768 7.33790 7.62876 7.81589 7.91716 8.06789 8.28668 8.36130 8.61799 8.85245 8.91888 9.01615 10.28835 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.028163 B = 0.001904 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.963598 B =14698.516149 C =15336.181035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.094 4.094 6 C -0.099 4.099 7 C -0.150 4.150 8 C 0.169 3.831 9 N -0.693 5.693 10 C 0.693 3.307 11 O -0.561 6.561 12 N -0.660 5.660 13 C 0.016 3.984 14 C -0.118 4.118 15 C -0.139 4.139 16 C 0.106 3.894 17 C -0.464 4.464 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.811 5.811 21 Si 0.913 3.087 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.206 4.206 26 C -0.082 4.082 27 C -0.116 4.116 28 C -0.102 4.102 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.403 0.597 41 H 0.393 0.607 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.278 0.722 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.142 0.858 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 1.499 -14.369 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.095 4.095 6 C -0.117 4.117 7 C -0.171 4.171 8 C 0.073 3.927 9 N -0.341 5.341 10 C 0.394 3.606 11 O -0.437 6.437 12 N -0.306 5.306 13 C -0.076 4.076 14 C -0.139 4.139 15 C -0.159 4.159 16 C 0.103 3.897 17 C -0.494 4.494 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.438 5.438 21 Si 0.738 3.262 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.226 4.226 26 C -0.102 4.102 27 C -0.137 4.137 28 C -0.121 4.121 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.237 0.763 41 H 0.227 0.773 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.127 0.873 47 H 0.160 0.840 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.678 2.092 -14.582 23.011 hybrid contribution 0.209 -0.762 0.948 1.234 sum -17.469 1.330 -13.634 22.200 Atomic orbital electron populations 1.21884 0.93941 1.01885 1.01712 1.19449 0.95445 0.95023 0.92787 1.21967 1.01439 0.95005 1.01792 1.21889 1.01434 1.00067 0.96146 1.19718 0.99204 0.94258 0.96340 1.20640 1.00157 0.94174 0.96754 1.20815 1.02368 0.99507 0.94407 1.17524 0.96762 0.91300 0.87075 1.42683 1.16992 1.45185 1.29197 1.16005 0.80796 0.82372 0.81421 1.90907 1.58277 1.33686 1.60807 1.42091 1.21939 1.33848 1.32686 1.17015 0.84385 1.14606 0.91623 1.20252 0.98030 1.03892 0.91676 1.20914 0.91149 1.03886 0.99986 1.17699 0.92592 0.88880 0.90515 1.19500 1.03606 1.15248 1.11092 0.90530 1.25859 0.98756 0.93816 0.95933 1.69786 1.38152 1.14012 1.21820 0.86243 0.81285 0.78940 0.79780 1.19475 1.20381 1.18733 1.20807 0.96705 1.10159 0.94954 1.20438 0.91932 0.99377 0.98419 1.21412 1.00268 0.92896 0.99077 1.21085 0.97138 1.00150 0.93684 0.92516 0.92576 0.92544 0.92111 0.92561 0.92223 0.92540 0.92569 0.92399 0.86189 0.86076 0.76250 0.77333 0.89119 0.86096 0.91118 0.88564 0.87297 0.84042 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.29 37.16 0.31 -0.66 16 2 C -0.03 -0.22 0.85 -155.66 -0.13 -0.36 16 3 C -0.14 -1.13 7.13 37.16 0.26 -0.86 16 4 C -0.14 -1.05 8.29 37.15 0.31 -0.75 16 5 C -0.09 -0.99 4.76 -104.59 -0.50 -1.49 16 6 C -0.10 -0.99 8.70 -39.61 -0.34 -1.34 16 7 C -0.15 -1.64 9.97 -39.40 -0.39 -2.03 16 8 C 0.17 2.26 6.29 -83.69 -0.53 1.74 16 9 N -0.69 -9.09 5.34 -14.23 -0.08 -9.16 16 10 C 0.69 12.14 8.23 -86.92 -0.72 11.42 16 11 O -0.56 -11.97 11.23 5.29 0.06 -11.91 16 12 N -0.66 -11.44 5.31 -14.10 -0.07 -11.52 16 13 C 0.02 0.36 6.31 -83.57 -0.53 -0.17 16 14 C -0.12 -2.66 9.90 -39.79 -0.39 -3.06 16 15 C -0.14 -3.56 8.57 -39.26 -0.34 -3.90 16 16 C 0.11 2.84 5.50 -106.80 -0.59 2.25 16 17 C -0.46 -12.40 9.03 -37.86 -0.34 -12.74 16 18 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 19 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 20 N -0.81 -20.97 10.95 55.55 0.61 -20.36 16 21 Si 0.91 18.96 29.56 -169.99 -5.03 13.93 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.21 -5.25 9.74 -39.26 -0.38 -5.63 16 26 C -0.08 -1.96 8.61 -39.79 -0.34 -2.31 16 27 C -0.12 -1.69 8.69 -39.39 -0.34 -2.03 16 28 C -0.10 -1.24 8.97 -39.61 -0.36 -1.60 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 32 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 35 H 0.06 0.41 7.38 -51.93 -0.38 0.02 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.12 0.95 7.09 -52.49 -0.37 0.58 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.40 3.78 8.85 -40.82 -0.36 3.42 16 41 H 0.39 5.27 8.84 -40.82 -0.36 4.91 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.12 3.17 6.46 -52.48 -0.34 2.83 16 44 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 45 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 46 H 0.11 2.62 6.22 -52.49 -0.33 2.29 16 47 H 0.14 2.40 6.26 -52.49 -0.33 2.07 16 48 H 0.13 1.36 5.88 -52.49 -0.31 1.05 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -30.46 387.25 -10.98 -41.44 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -6.87 Total: 13.52 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -5.43 Total: -21.77 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.46 Total: -41.04 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.06 Total: -11.91 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.46 -10.98 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000148591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.068 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds