Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.52994 * 109.47204 * 239.99979 * 2 1 3 5 5 C 1.50706 * 109.46840 * 119.99887 * 2 1 3 6 6 C 1.38281 * 119.92939 * 60.00200 * 5 2 1 7 7 C 1.38111 * 120.06845 * 180.02562 * 6 5 2 8 8 C 1.38867 * 119.92982 * 359.97438 * 7 6 5 9 9 N 1.39931 * 120.06840 * 179.97438 * 8 7 6 10 10 C 1.34783 * 119.99961 * 144.89734 * 9 8 7 11 11 O 1.21583 * 120.00036 * 4.06047 * 10 9 8 12 12 N 1.34773 * 119.99765 * 184.06021 * 10 9 8 13 13 C 1.39227 * 119.99689 * 184.26940 * 12 10 9 14 14 C 1.39492 * 119.83366 * 144.42138 * 13 12 10 15 15 C 1.36370 * 120.16498 * 179.75797 * 14 13 12 16 16 C 1.40868 * 119.83146 * 0.51331 * 15 14 13 17 17 C 1.41150 * 120.16336 * 179.71591 * 16 15 14 18 18 H 1.08005 * 120.00051 * 214.27798 * 17 16 15 19 19 C 1.39896 * 120.00021 * 34.28375 * 17 16 15 20 20 N 1.30876 * 119.99825 * 5.54272 * 19 17 16 21 21 Si 1.86798 * 120.00085 * 185.53791 * 19 17 16 22 22 H 1.48506 * 109.47259 * 90.00038 * 21 19 17 23 23 H 1.48498 * 109.47221 * 210.00022 * 21 19 17 24 24 H 1.48500 * 109.47160 * 329.99937 * 21 19 17 25 25 C 1.40875 * 119.67254 * 359.74079 * 16 15 14 26 26 C 1.36368 * 119.82547 * 0.02562 * 25 16 15 27 27 C 1.38874 * 119.86053 * 0.25250 * 8 7 6 28 28 C 1.38111 * 119.92784 * 359.53898 * 27 8 7 29 29 H 1.08997 * 109.46973 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.46614 * 59.99611 * 1 2 3 31 31 H 1.08991 * 109.46825 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47117 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47352 * 300.00005 * 3 2 1 34 34 H 1.09006 * 109.47320 * 60.00010 * 3 2 1 35 35 H 1.09007 * 109.47270 * 300.00034 * 4 2 1 36 36 H 1.08994 * 109.47468 * 60.00128 * 4 2 1 37 37 H 1.08999 * 109.47183 * 180.02562 * 4 2 1 38 38 H 1.08001 * 119.96387 * 359.97438 * 6 5 2 39 39 H 1.07997 * 120.03387 * 179.97438 * 7 6 5 40 40 H 0.97002 * 120.00200 * 324.62220 * 9 8 7 41 41 H 0.97001 * 120.00550 * 4.27144 * 12 10 9 42 42 H 1.07994 * 119.91342 * 359.97438 * 14 13 12 43 43 H 1.08003 * 120.08469 * 180.23234 * 15 14 13 44 44 H 0.97000 * 119.99801 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.08082 * 179.97438 * 25 16 15 46 46 H 1.08000 * 119.91147 * 179.97438 * 26 25 16 47 47 H 1.08000 * 120.03175 * 179.72594 * 27 8 7 48 48 H 1.08001 * 119.96345 * 180.18790 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.6974 -2.0343 1.4479 7 6 2.1557 -2.6880 2.5749 8 6 2.9541 -2.0145 3.4900 9 7 3.4196 -2.6738 4.6331 10 6 4.6423 -2.3899 5.1238 11 8 5.3110 -1.5094 4.6181 12 7 5.1238 -3.0822 6.1752 13 6 6.3477 -2.7309 6.7383 14 6 6.5354 -2.8429 8.1160 15 6 7.7330 -2.5053 8.6741 16 6 8.7784 -2.0323 7.8570 17 6 10.0189 -1.6752 8.4280 18 1 10.5900 -0.8585 8.0116 19 6 10.5087 -2.3793 9.5333 20 7 9.8720 -3.4357 9.9707 21 14 12.0714 -1.8115 10.3846 22 1 11.7265 -0.8504 11.4630 23 1 12.7695 -2.9837 10.9709 24 1 12.9605 -1.1490 9.3968 25 6 8.5796 -1.9169 6.4671 26 6 7.3780 -2.2628 5.9229 27 6 3.2848 -0.6836 3.2712 28 6 2.8269 -0.0368 2.1400 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7216 -1.2489 38 1 1.0761 -2.5574 0.7360 39 1 1.8934 -3.7219 2.7443 40 1 2.8607 -3.3323 5.0746 41 1 4.6178 -3.8252 6.5395 42 1 5.7313 -3.2011 8.7417 43 1 7.8781 -2.5960 9.7405 44 1 10.2114 -3.9237 10.7373 45 1 9.3764 -1.5546 5.8345 46 1 7.2239 -2.1745 4.8576 47 1 3.9019 -0.1558 3.9833 48 1 3.0863 0.9974 1.9678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000148591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = -4.795975 kcal Electronic energy + Delta-G solvation = -27697.844863 eV Core-core repulsion = 23909.295033 eV Total energy + Delta-G solvation = -3788.549829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.92073 -40.59646 -39.32719 -37.57737 -36.14349 -35.29306 -34.53889 -32.02389 -31.51466 -30.91291 -29.49899 -28.21837 -28.03005 -26.78517 -24.32273 -23.51459 -23.23510 -22.55528 -21.63983 -20.14183 -19.55566 -19.13153 -18.93548 -17.65639 -17.00210 -16.77482 -16.41376 -16.07181 -15.68303 -15.47863 -15.35477 -15.10231 -14.92108 -14.54700 -14.51584 -14.20672 -14.01538 -13.76763 -13.64376 -13.60682 -13.33801 -13.00094 -12.82761 -12.77610 -12.67563 -12.50349 -12.42530 -12.34521 -11.92622 -11.85396 -11.64729 -11.58153 -11.42711 -11.26082 -11.13223 -10.88278 -10.53589 -9.80803 -9.48455 -9.01460 -8.70893 -8.55312 -6.30855 0.36554 0.52210 0.82259 1.12558 1.39874 1.46139 1.52925 1.64667 2.08603 2.24445 2.79056 2.90555 3.24460 3.68956 3.74055 3.85808 4.11022 4.17039 4.19897 4.37558 4.42881 4.48731 4.52527 4.61493 4.71030 4.83691 4.84801 4.89237 4.94926 5.05624 5.07891 5.08632 5.09772 5.12340 5.15314 5.25944 5.28982 5.36624 5.41054 5.44788 5.50617 5.50914 5.62455 5.67237 5.78664 5.80570 6.00783 6.09306 6.14967 6.19599 6.38259 6.66041 6.95224 6.98929 7.03605 7.53094 8.42212 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.028163 B = 0.001904 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.963598 B =14698.516149 C =15336.181035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.089 4.089 6 C -0.096 4.096 7 C -0.139 4.139 8 C 0.143 3.857 9 N -0.670 5.670 10 C 0.692 3.308 11 O -0.602 6.602 12 N -0.652 5.652 13 C 0.036 3.964 14 C -0.114 4.114 15 C -0.155 4.155 16 C 0.073 3.927 17 C -0.502 4.502 18 H 0.070 0.930 19 C 0.032 3.968 20 N -0.838 5.838 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.223 4.223 26 C -0.093 4.093 27 C -0.142 4.142 28 C -0.113 4.113 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.423 0.577 41 H 0.416 0.584 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.286 0.714 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.834 0.241 -15.478 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 C -0.203 4.203 4 C -0.194 4.194 5 C -0.090 4.090 6 C -0.115 4.115 7 C -0.160 4.160 8 C 0.048 3.952 9 N -0.320 5.320 10 C 0.393 3.607 11 O -0.481 6.481 12 N -0.299 5.299 13 C -0.057 4.057 14 C -0.135 4.135 15 C -0.175 4.175 16 C 0.071 3.929 17 C -0.533 4.533 18 H 0.088 0.912 19 C -0.181 4.181 20 N -0.466 5.466 21 Si 0.806 3.194 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.188 1.188 25 C -0.243 4.243 26 C -0.113 4.113 27 C -0.163 4.163 28 C -0.132 4.132 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.262 0.738 41 H 0.254 0.746 42 H 0.145 0.855 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.225 0.795 -15.706 25.619 hybrid contribution 0.767 -0.352 1.108 1.393 sum -19.458 0.442 -14.598 24.329 Atomic orbital electron populations 1.21866 0.92532 1.02618 1.02120 1.19527 0.96470 0.94849 0.91946 1.21977 1.00791 0.95187 1.02375 1.21886 1.00563 1.00698 0.96268 1.20041 0.97799 0.94701 0.96419 1.21038 0.99672 0.93925 0.96831 1.21114 1.00652 1.00681 0.93514 1.17725 0.98293 0.91177 0.87973 1.42334 1.15511 1.45084 1.29045 1.16139 0.81745 0.81817 0.80967 1.90900 1.59847 1.35390 1.61967 1.41828 1.20691 1.34728 1.32703 1.17013 0.85393 1.11926 0.91417 1.20505 0.97955 1.02783 0.92213 1.20906 0.92149 1.05038 0.99441 1.18006 0.93470 0.90235 0.91182 1.19695 1.04318 1.16266 1.12971 0.91175 1.26671 1.01967 0.93483 0.95949 1.69833 1.39723 1.14676 1.22330 0.85156 0.76977 0.78750 0.78488 1.18637 1.19171 1.18754 1.20915 0.97501 1.10987 0.94868 1.20518 0.92240 1.00010 0.98553 1.21277 1.01322 0.93980 0.99683 1.21183 0.97789 1.00592 0.93597 0.93149 0.91210 0.91639 0.93202 0.91070 0.92575 0.91677 0.91084 0.93793 0.83133 0.83117 0.73817 0.74639 0.85505 0.87246 0.90335 0.88836 0.87627 0.87510 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.29 71.98 0.60 -0.89 16 2 C -0.03 -0.40 0.85 -52.93 -0.05 -0.44 16 3 C -0.15 -2.11 7.13 71.98 0.51 -1.59 16 4 C -0.14 -1.73 8.29 71.98 0.60 -1.14 16 5 C -0.09 -1.71 4.76 -19.84 -0.09 -1.80 16 6 C -0.10 -1.64 8.70 22.25 0.19 -1.44 16 7 C -0.14 -2.63 9.97 22.39 0.22 -2.41 16 8 C 0.14 3.69 6.29 38.15 0.24 3.93 16 9 N -0.67 -16.64 5.34 -317.18 -1.69 -18.33 16 10 C 0.69 23.96 8.23 179.05 1.47 25.44 16 11 O -0.60 -26.47 11.23 -3.98 -0.04 -26.52 16 12 N -0.65 -21.73 5.31 -316.78 -1.68 -23.42 16 13 C 0.04 1.60 6.31 38.57 0.24 1.84 16 14 C -0.11 -5.10 9.90 22.14 0.22 -4.88 16 15 C -0.16 -8.12 8.57 22.48 0.19 -7.93 16 16 C 0.07 4.11 5.50 -21.28 -0.12 3.99 16 17 C -0.50 -28.00 9.03 23.39 0.21 -27.79 16 18 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 19 C 0.03 1.64 5.31 85.24 0.45 2.10 16 20 N -0.84 -44.10 10.95 21.82 0.24 -43.87 16 21 Si 0.99 39.34 29.56 68.60 2.03 41.37 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 C -0.22 -11.89 9.74 22.48 0.22 -11.67 16 26 C -0.09 -4.60 8.61 22.13 0.19 -4.41 16 27 C -0.14 -4.26 8.69 22.39 0.19 -4.06 16 28 C -0.11 -2.78 8.97 22.25 0.20 -2.58 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.61 7.38 -2.39 -0.02 0.60 16 32 H 0.05 0.82 7.51 -2.39 -0.02 0.80 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.84 7.51 -2.38 -0.02 0.82 16 35 H 0.06 0.71 7.38 -2.38 -0.02 0.69 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.15 1.67 7.09 -2.91 -0.02 1.65 16 39 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.42 6.79 8.85 -92.71 -0.82 5.97 16 41 H 0.42 10.05 8.84 -92.71 -0.82 9.23 16 42 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.11 5.91 6.46 -2.91 -0.02 5.89 16 44 H 0.29 13.61 8.30 -92.71 -0.77 12.85 16 45 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 46 H 0.11 5.27 6.22 -2.91 -0.02 5.25 16 47 H 0.11 3.92 6.26 -2.91 -0.02 3.90 16 48 H 0.13 2.94 5.88 -2.91 -0.02 2.93 16 Total: -1.00 -69.75 387.25 3.91 -65.84 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.64 Total: 40.65 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 5.70 Total: -35.74 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -3.14 Total: -85.61 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -69.75 3.91 -65.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000148591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.049 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds