Wall clock time and date at job start Tue Mar 31 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86802 * 119.99544 * 2 1 4 4 H 1.48503 * 109.47091 * 239.99705 * 3 2 1 5 5 H 1.48494 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47109 * 119.99721 * 3 2 1 7 7 C 1.40095 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.39851 * 119.99972 * 0.02562 * 7 2 1 10 10 N 1.31601 * 125.27921 * 179.97438 * 9 7 2 11 11 C 1.31301 * 115.81069 * 179.97438 * 10 9 7 12 12 C 1.48079 * 122.48705 * 180.02562 * 11 10 9 13 13 C 1.39618 * 120.04984 * 179.70304 * 12 11 10 14 14 C 1.37736 * 119.94380 * 179.71790 * 13 12 11 15 15 C 1.39174 * 120.04997 * 0.55724 * 14 13 12 16 16 S 1.76204 * 119.94397 * 179.74231 * 15 14 13 17 17 C 1.76199 * 102.99939 * 85.18018 * 16 15 14 18 18 C 1.38977 * 120.08233 * 5.33042 * 17 16 15 19 19 C 1.38081 * 119.92076 * 179.76817 * 18 17 16 20 20 C 1.38308 * 120.07767 * 0.51408 * 19 18 17 21 21 C 1.38314 * 120.16409 * 359.74486 * 20 19 18 22 22 C 1.38075 * 120.07735 * 359.97438 * 21 20 19 23 23 C 1.39175 * 120.10847 * 359.71858 * 15 14 13 24 24 C 1.37728 * 120.04906 * 359.97438 * 23 15 14 25 25 C 1.37318 * 115.02505 * 0.02562 * 11 10 9 26 26 S 1.71003 * 109.08055 * 359.97438 * 25 11 10 27 27 H 0.97002 * 120.00581 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.02529 * 359.97015 * 13 12 11 29 29 H 1.08003 * 119.96983 * 180.27383 * 14 13 12 30 30 H 1.08000 * 120.04056 * 0.02562 * 18 17 16 31 31 H 1.07998 * 119.95943 * 180.23473 * 19 18 17 32 32 H 1.08000 * 119.92311 * 179.71794 * 20 19 18 33 33 H 1.07992 * 119.96013 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.04081 * 179.97438 * 22 21 20 35 35 H 1.07998 * 119.97598 * 179.97438 * 23 15 14 36 36 H 1.08005 * 120.02409 * 180.02562 * 24 23 15 37 37 H 1.07992 * 125.45980 * 180.26823 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0954 1.6965 -1.2125 5 1 1.2766 2.7464 -0.0006 6 1 3.0953 1.6966 1.2126 7 6 2.0083 -1.2132 0.0005 8 1 3.0883 -1.2132 0.0001 9 6 1.3090 -2.4244 0.0005 10 7 1.8594 -3.6198 0.0005 11 6 1.0248 -4.6334 0.0011 12 6 1.4836 -6.0414 0.0017 13 6 0.5511 -7.0805 0.0085 14 6 0.9801 -8.3893 0.0032 15 6 2.3420 -8.6763 0.0028 16 16 2.8878 -10.3517 0.0029 17 6 2.8728 -10.7735 -1.7078 18 6 2.5897 -9.8035 -2.6620 19 6 2.5836 -10.1366 -4.0020 20 6 2.8483 -11.4362 -4.3944 21 6 3.1252 -12.4054 -3.4473 22 6 3.1387 -12.0783 -2.1059 23 6 3.2734 -7.6421 0.0018 24 6 2.8491 -6.3318 0.0007 25 6 -0.3050 -4.2910 0.0010 26 16 -0.4433 -2.5865 0.0009 27 1 -0.4851 0.8400 -0.0004 28 1 -0.5057 -6.8582 0.0138 29 1 0.2592 -9.1934 0.0040 30 1 2.3789 -8.7894 -2.3561 31 1 2.3675 -9.3825 -4.7443 32 1 2.8384 -11.6950 -5.4429 33 1 3.3309 -13.4192 -3.7573 34 1 3.3546 -12.8357 -1.3668 35 1 4.3297 -7.8673 0.0019 36 1 3.5723 -5.5296 -0.0004 37 1 -1.1310 -4.9865 0.0055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000274031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:02 Heat of formation + Delta-G solvation = 65.310988 kcal Electronic energy + Delta-G solvation = -21947.746127 eV Core-core repulsion = 18678.357254 eV Total energy + Delta-G solvation = -3269.388873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.045 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.12728 -38.87503 -37.18003 -34.26215 -31.62434 -31.03368 -30.92893 -30.70966 -28.59653 -26.44557 -23.91326 -22.80170 -22.63946 -22.14990 -21.40695 -18.68403 -18.12301 -17.84590 -17.00566 -16.00913 -15.66689 -15.34541 -15.03219 -14.86079 -14.32679 -14.20764 -13.78590 -13.62906 -13.26817 -13.23777 -13.09014 -13.03579 -12.38939 -12.31524 -12.04639 -11.81013 -11.46388 -11.29911 -11.13620 -10.95434 -10.65932 -10.51680 -10.39796 -9.88830 -9.81283 -9.63742 -9.08411 -8.78735 -8.72683 -8.02916 -7.94681 -7.43769 -7.20159 -7.07802 -4.87317 0.89931 1.12654 1.27246 1.68775 1.76858 2.39052 2.59644 2.86531 2.90810 2.97824 3.33839 3.59231 3.62324 3.73364 3.84770 4.35620 4.76226 4.84296 5.00272 5.07723 5.08982 5.16242 5.30521 5.35207 5.42374 5.64685 5.67667 5.74559 5.89027 6.00668 6.21046 6.21470 6.27398 6.40048 6.41145 6.53376 6.58542 6.71525 6.74268 6.80528 7.13223 7.22445 7.34879 7.77028 8.19544 8.24904 9.54921 9.69322 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.002276 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.115794 B =12301.565259 C =12487.191653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.055 3.945 3 Si 0.944 3.056 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.372 4.372 8 H 0.104 0.896 9 C 0.202 3.798 10 N -0.588 5.588 11 C 0.120 3.880 12 C 0.050 3.950 13 C -0.126 4.126 14 C -0.066 4.066 15 C -0.163 4.163 16 S -0.020 6.020 17 C -0.094 4.094 18 C -0.121 4.121 19 C -0.102 4.102 20 C -0.130 4.130 21 C -0.107 4.107 22 C -0.105 4.105 23 C -0.067 4.067 24 C -0.108 4.108 25 C -0.440 4.440 26 S 0.131 5.869 27 H 0.301 0.699 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -13.975 -3.979 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.168 4.168 3 Si 0.766 3.234 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.415 4.415 8 H 0.122 0.878 9 C -0.051 4.051 10 N -0.309 5.309 11 C -0.019 4.019 12 C 0.047 3.953 13 C -0.147 4.147 14 C -0.087 4.087 15 C -0.275 4.275 16 S 0.230 5.770 17 C -0.206 4.206 18 C -0.144 4.144 19 C -0.122 4.122 20 C -0.151 4.151 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.585 4.585 26 S 0.392 5.608 27 H 0.114 0.886 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.375 -13.755 -2.894 14.255 hybrid contribution 0.010 0.576 -1.115 1.255 sum 2.385 -13.179 -4.009 13.980 Atomic orbital electron populations 1.68747 1.07726 1.31157 1.33403 1.26180 0.95134 1.02777 0.92660 0.85728 0.79541 0.77611 0.80474 1.18366 1.19796 1.18350 1.18942 0.95871 0.87336 1.39335 0.87797 1.23830 0.91425 0.93987 0.95902 1.67276 1.34512 0.97024 1.32105 1.18704 0.88731 0.91558 1.02868 1.18797 0.92746 0.91412 0.92338 1.21221 0.99899 0.91442 1.02160 1.21291 0.94046 0.96557 0.96765 1.21560 0.96110 0.96039 1.13833 1.83915 1.82793 1.08197 1.02070 1.22186 1.03415 0.96776 0.98174 1.21352 1.00908 0.99112 0.93035 1.21120 0.98925 0.96602 0.95583 1.21160 1.01088 0.93350 0.99472 1.21039 0.99745 0.99335 0.92556 1.20719 1.01714 0.94261 0.96246 1.21400 0.98896 0.91946 0.96546 1.21406 0.95890 0.95941 0.99646 1.26553 0.99182 1.04670 1.28103 1.84281 1.11357 0.93681 1.71434 0.88637 0.85394 0.85633 0.85486 0.85853 0.86068 0.85805 0.85723 0.85491 0.84293 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.99 10.63 55.56 0.59 -17.40 16 2 C 0.05 1.24 5.50 -17.31 -0.10 1.14 16 3 Si 0.94 16.80 29.56 -169.99 -5.03 11.77 16 4 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 5 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 6 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 7 C -0.37 -9.26 9.44 -38.28 -0.36 -9.62 16 8 H 0.10 2.49 7.85 -52.49 -0.41 2.07 16 9 C 0.20 5.32 7.11 -17.05 -0.12 5.20 16 10 N -0.59 -15.27 10.01 -9.51 -0.10 -15.36 16 11 C 0.12 2.87 6.65 -84.39 -0.56 2.31 16 12 C 0.05 1.01 5.88 -104.83 -0.62 0.39 16 13 C -0.13 -2.17 9.47 -39.25 -0.37 -2.54 16 14 C -0.07 -1.00 9.67 -39.42 -0.38 -1.38 16 15 C -0.16 -2.45 3.77 -38.89 -0.15 -2.60 16 16 S -0.02 -0.27 21.86 -107.50 -2.35 -2.62 16 17 C -0.09 -1.21 6.11 -39.03 -0.24 -1.45 16 18 C -0.12 -1.61 9.36 -39.37 -0.37 -1.98 16 19 C -0.10 -1.19 10.04 -39.61 -0.40 -1.58 16 20 C -0.13 -1.30 10.04 -39.53 -0.40 -1.70 16 21 C -0.11 -1.04 10.04 -39.61 -0.40 -1.44 16 22 C -0.11 -1.17 9.79 -39.36 -0.39 -1.55 16 23 C -0.07 -1.06 9.66 -39.42 -0.38 -1.44 16 24 C -0.11 -1.99 9.62 -39.26 -0.38 -2.37 16 25 C -0.44 -10.25 10.41 30.40 0.32 -9.93 16 26 S 0.13 3.19 20.11 -107.50 -2.16 1.03 16 27 H 0.30 6.19 8.30 -40.82 -0.34 5.85 16 28 H 0.13 2.07 6.60 -52.49 -0.35 1.72 16 29 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 30 H 0.13 1.87 6.23 -52.49 -0.33 1.54 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.14 2.67 7.67 -52.48 -0.40 2.27 16 37 H 0.13 2.79 6.83 -52.49 -0.36 2.43 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -26.99 347.88 -12.60 -39.59 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -3.52 Total: 8.28 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -5.28 Total: -30.54 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.50 Total: -32.76 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -4.51 Total: -1.59 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.99 -12.60 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000274031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.903 kcal (2) G-P(sol) polarization free energy of solvation -26.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds