Wall clock time and date at job start Tue Mar 31 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86802 * 119.99544 * 2 1 4 4 H 1.48503 * 109.47091 * 239.99705 * 3 2 1 5 5 H 1.48494 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47109 * 119.99721 * 3 2 1 7 7 C 1.40095 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.39851 * 119.99972 * 0.02562 * 7 2 1 10 10 N 1.31601 * 125.27921 * 179.97438 * 9 7 2 11 11 C 1.31301 * 115.81069 * 179.97438 * 10 9 7 12 12 C 1.48079 * 122.48705 * 180.02562 * 11 10 9 13 13 C 1.39618 * 120.04984 * 179.70304 * 12 11 10 14 14 C 1.37736 * 119.94380 * 179.71790 * 13 12 11 15 15 C 1.39174 * 120.04997 * 0.55724 * 14 13 12 16 16 S 1.76204 * 119.94397 * 179.74231 * 15 14 13 17 17 C 1.76199 * 102.99939 * 85.18018 * 16 15 14 18 18 C 1.38977 * 120.08233 * 5.33042 * 17 16 15 19 19 C 1.38081 * 119.92076 * 179.76817 * 18 17 16 20 20 C 1.38308 * 120.07767 * 0.51408 * 19 18 17 21 21 C 1.38314 * 120.16409 * 359.74486 * 20 19 18 22 22 C 1.38075 * 120.07735 * 359.97438 * 21 20 19 23 23 C 1.39175 * 120.10847 * 359.71858 * 15 14 13 24 24 C 1.37728 * 120.04906 * 359.97438 * 23 15 14 25 25 C 1.37318 * 115.02505 * 0.02562 * 11 10 9 26 26 S 1.71003 * 109.08055 * 359.97438 * 25 11 10 27 27 H 0.97002 * 120.00581 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.02529 * 359.97015 * 13 12 11 29 29 H 1.08003 * 119.96983 * 180.27383 * 14 13 12 30 30 H 1.08000 * 120.04056 * 0.02562 * 18 17 16 31 31 H 1.07998 * 119.95943 * 180.23473 * 19 18 17 32 32 H 1.08000 * 119.92311 * 179.71794 * 20 19 18 33 33 H 1.07992 * 119.96013 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.04081 * 179.97438 * 22 21 20 35 35 H 1.07998 * 119.97598 * 179.97438 * 23 15 14 36 36 H 1.08005 * 120.02409 * 180.02562 * 24 23 15 37 37 H 1.07992 * 125.45980 * 180.26823 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0954 1.6965 -1.2125 5 1 1.2766 2.7464 -0.0006 6 1 3.0953 1.6966 1.2126 7 6 2.0083 -1.2132 0.0005 8 1 3.0883 -1.2132 0.0001 9 6 1.3090 -2.4244 0.0005 10 7 1.8594 -3.6198 0.0005 11 6 1.0248 -4.6334 0.0011 12 6 1.4836 -6.0414 0.0017 13 6 0.5511 -7.0805 0.0085 14 6 0.9801 -8.3893 0.0032 15 6 2.3420 -8.6763 0.0028 16 16 2.8878 -10.3517 0.0029 17 6 2.8728 -10.7735 -1.7078 18 6 2.5897 -9.8035 -2.6620 19 6 2.5836 -10.1366 -4.0020 20 6 2.8483 -11.4362 -4.3944 21 6 3.1252 -12.4054 -3.4473 22 6 3.1387 -12.0783 -2.1059 23 6 3.2734 -7.6421 0.0018 24 6 2.8491 -6.3318 0.0007 25 6 -0.3050 -4.2910 0.0010 26 16 -0.4433 -2.5865 0.0009 27 1 -0.4851 0.8400 -0.0004 28 1 -0.5057 -6.8582 0.0138 29 1 0.2592 -9.1934 0.0040 30 1 2.3789 -8.7894 -2.3561 31 1 2.3675 -9.3825 -4.7443 32 1 2.8384 -11.6950 -5.4429 33 1 3.3309 -13.4192 -3.7573 34 1 3.3546 -12.8357 -1.3668 35 1 4.3297 -7.8673 0.0019 36 1 3.5723 -5.5296 -0.0004 37 1 -1.1310 -4.9865 0.0055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000274031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:01 Heat of formation + Delta-G solvation = 54.604139 kcal Electronic energy + Delta-G solvation = -21948.210411 eV Core-core repulsion = 18678.357254 eV Total energy + Delta-G solvation = -3269.853156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.045 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55223 -39.79079 -38.86899 -36.04698 -33.03617 -32.18763 -31.87567 -31.81017 -30.28385 -28.25257 -25.45869 -23.82096 -23.61928 -23.38506 -22.94305 -20.33390 -19.75618 -19.10231 -18.16314 -17.60236 -17.01218 -16.75383 -16.30894 -15.82807 -15.75788 -15.41124 -15.06990 -14.95090 -14.59277 -14.55467 -14.41749 -14.08494 -13.96885 -13.78123 -13.54689 -13.23639 -12.93061 -12.54252 -12.29698 -12.13637 -12.05501 -12.04578 -11.64475 -11.45439 -11.31752 -10.78419 -10.27718 -10.06214 -9.93129 -9.89453 -9.86766 -8.93761 -8.86335 -8.42772 -6.76021 -0.44154 0.25288 0.34513 0.42472 0.53221 0.74867 1.38566 1.40131 1.45274 1.54894 1.56458 1.94131 2.16122 2.17953 2.76757 2.77622 3.25535 3.67115 3.83150 3.92704 3.95392 4.03421 4.24822 4.33428 4.36444 4.51305 4.57052 4.62941 4.68753 4.80928 4.91070 4.93379 5.02025 5.07046 5.19519 5.21880 5.33649 5.46398 5.56100 5.57121 5.64862 5.79731 5.89360 5.99469 6.35773 6.38409 7.68621 7.97805 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.002276 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.115794 B =12301.565259 C =12487.191653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.021 3.979 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.397 4.397 8 H 0.103 0.897 9 C 0.168 3.832 10 N -0.617 5.617 11 C 0.113 3.887 12 C 0.013 3.987 13 C -0.121 4.121 14 C -0.060 4.060 15 C -0.155 4.155 16 S -0.002 6.002 17 C -0.112 4.112 18 C -0.142 4.142 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.102 4.102 22 C -0.109 4.109 23 C -0.063 4.063 24 C -0.116 4.116 25 C -0.457 4.457 26 S 0.114 5.886 27 H 0.313 0.687 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -15.924 -4.840 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.200 4.200 3 Si 0.836 3.164 4 H -0.180 1.180 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.440 4.440 8 H 0.121 0.879 9 C -0.084 4.084 10 N -0.339 5.339 11 C -0.026 4.026 12 C 0.010 3.990 13 C -0.142 4.142 14 C -0.080 4.080 15 C -0.267 4.267 16 S 0.247 5.753 17 C -0.224 4.224 18 C -0.165 4.165 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.084 4.084 24 C -0.137 4.137 25 C -0.601 4.601 26 S 0.375 5.625 27 H 0.127 0.873 28 H 0.154 0.846 29 H 0.170 0.830 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.139 0.861 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.942 -15.736 -3.762 16.445 hybrid contribution -0.125 0.974 -0.932 1.354 sum 2.817 -14.762 -4.694 15.745 Atomic orbital electron populations 1.68779 1.09032 1.32901 1.31969 1.27187 0.95936 1.05586 0.91251 0.84662 0.78318 0.72929 0.80499 1.17966 1.18028 1.17965 1.19312 0.96186 0.88247 1.40246 0.87905 1.24309 0.92543 0.94770 0.96781 1.67325 1.35505 0.97547 1.33546 1.19232 0.88913 0.92914 1.01493 1.18829 0.94030 0.90281 0.95821 1.21308 0.99810 0.91627 1.01483 1.21559 0.94730 0.96249 0.95506 1.21832 0.96048 0.97538 1.11243 1.83774 1.82987 1.05700 1.02820 1.22238 1.05072 0.97709 0.97392 1.21275 1.02668 0.98364 0.94215 1.21334 0.99157 0.97938 0.95050 1.21539 0.99411 0.92493 1.01165 1.21464 0.98073 1.00844 0.91779 1.21027 1.01017 0.93686 0.97523 1.21553 1.00135 0.90924 0.95761 1.21303 0.95070 0.96792 1.00500 1.26685 0.99735 1.04286 1.29432 1.84005 1.10662 0.95067 1.72789 0.87317 0.84644 0.83023 0.87670 0.85082 0.83256 0.82464 0.83988 0.83544 0.86094 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.14 10.63 21.85 0.23 -36.90 16 2 C 0.02 0.94 5.50 85.30 0.47 1.41 16 3 Si 1.02 33.78 29.56 68.60 2.03 35.81 16 4 H -0.26 -8.30 7.11 99.48 0.71 -7.60 16 5 H -0.26 -7.78 7.11 99.48 0.71 -7.08 16 6 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 7 C -0.40 -20.53 9.44 23.11 0.22 -20.31 16 8 H 0.10 5.14 7.85 -2.91 -0.02 5.12 16 9 C 0.17 9.31 7.11 85.12 0.61 9.91 16 10 N -0.62 -33.94 10.01 -183.99 -1.84 -35.78 16 11 C 0.11 5.67 6.65 41.62 0.28 5.95 16 12 C 0.01 0.55 5.88 -20.00 -0.12 0.44 16 13 C -0.12 -4.21 9.47 22.48 0.21 -4.00 16 14 C -0.06 -1.77 9.67 22.38 0.22 -1.55 16 15 C -0.15 -4.52 3.77 22.72 0.09 -4.44 16 16 S 0.00 -0.06 21.86 -56.49 -1.23 -1.29 16 17 C -0.11 -2.70 6.11 22.63 0.14 -2.56 16 18 C -0.14 -3.66 9.36 22.41 0.21 -3.45 16 19 C -0.12 -2.48 10.04 22.25 0.22 -2.26 16 20 C -0.13 -2.10 10.04 22.30 0.22 -1.88 16 21 C -0.10 -1.59 10.04 22.25 0.22 -1.36 16 22 C -0.11 -2.07 9.79 22.41 0.22 -1.85 16 23 C -0.06 -2.00 9.66 22.37 0.22 -1.78 16 24 C -0.12 -4.47 9.62 22.48 0.22 -4.25 16 25 C -0.46 -22.23 10.41 67.60 0.70 -21.52 16 26 S 0.11 5.82 20.11 -56.49 -1.14 4.68 16 27 H 0.31 12.77 8.30 -92.71 -0.77 12.00 16 28 H 0.14 4.40 6.60 -2.91 -0.02 4.38 16 29 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.11 3.12 6.23 -2.91 -0.02 3.10 16 31 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.12 5.01 7.67 -2.91 -0.02 4.99 16 37 H 0.15 6.59 6.83 -2.91 -0.02 6.57 16 Total: -1.00 -61.45 347.88 3.50 -57.95 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 1.11 Total: 29.04 kcal Atomic # 6 Polarization: -57.85 SS G_CDS: 4.34 Total: -53.51 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -1.61 Total: -72.69 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.03 Total: 35.81 kcal Atomic # 16 Polarization: 5.76 SS G_CDS: -2.37 Total: 3.39 kcal Total: -61.45 3.50 -57.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000274031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.557 kcal (2) G-P(sol) polarization free energy of solvation -61.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds