Wall clock time and date at job start Tue Mar 31 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48496 * 109.47035 * 270.00028 * 3 2 1 5 5 H 1.48496 * 109.46948 * 30.00290 * 3 2 1 6 6 H 1.48498 * 109.46874 * 150.00355 * 3 2 1 7 7 C 1.40034 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99831 * 191.43639 * 7 2 1 9 9 C 1.40782 * 119.99813 * 11.43725 * 7 2 1 10 10 C 1.41081 * 120.07593 * 207.22839 * 9 7 2 11 11 C 1.36012 * 119.92314 * 180.02562 * 10 9 7 12 12 C 1.40441 * 120.07685 * 359.97438 * 11 10 9 13 13 N 1.35977 * 119.91892 * 179.97438 * 12 11 10 14 14 C 1.30801 * 119.99366 * 135.00254 * 13 12 11 15 15 C 1.46818 * 119.99678 * 180.02562 * 14 13 12 16 16 C 1.40089 * 120.12045 * 180.02562 * 15 14 13 17 17 C 1.37624 * 119.87351 * 180.02562 * 16 15 14 18 18 C 1.39063 * 120.12315 * 359.97438 * 17 16 15 19 19 O 1.35724 * 119.87509 * 180.02562 * 18 17 16 20 20 C 1.42901 * 117.00040 * 185.94648 * 19 18 17 21 21 C 1.53047 * 113.15344 * 258.87721 * 20 19 18 22 22 S 1.81494 * 89.86354 * 211.86653 * 21 20 19 23 23 C 1.53039 * 113.15482 * 158.44383 * 20 19 18 24 24 C 1.39064 * 120.24404 * 0.28847 * 18 17 16 25 25 C 1.37613 * 120.12558 * 359.45961 * 24 18 17 26 26 C 1.40428 * 120.15491 * 0.27554 * 12 11 10 27 27 C 1.36026 * 120.07854 * 359.43694 * 26 12 11 28 28 H 0.96998 * 119.99942 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.03958 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.96566 * 179.97438 * 11 10 9 31 31 H 1.08002 * 120.00280 * 359.97438 * 14 13 12 32 32 H 1.07996 * 120.06395 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.93662 * 179.97438 * 17 16 15 34 34 H 1.09004 * 112.49563 * 28.66034 * 20 19 18 35 35 H 1.09002 * 113.14491 * 327.11037 * 21 20 19 36 36 H 1.09001 * 113.15008 * 96.58803 * 21 20 19 37 37 H 1.08993 * 113.14953 * 263.40691 * 23 20 19 38 38 H 1.09005 * 113.14900 * 32.84881 * 23 20 19 39 39 H 1.08003 * 119.93227 * 179.72498 * 24 18 17 40 40 H 1.07999 * 120.06426 * 180.29253 * 25 24 18 41 41 H 1.07998 * 119.96171 * 179.73092 * 26 12 11 42 42 H 1.08002 * 120.04041 * 180.25316 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4895 2.0464 -1.4000 5 1 1.4395 2.6526 0.7001 6 1 3.5395 1.4401 0.7000 7 6 2.0082 -1.2127 -0.0005 8 1 3.0720 -1.2220 0.1849 9 6 1.3252 -2.4197 -0.2428 10 6 1.8171 -3.6297 0.2903 11 6 1.1550 -4.7941 0.0538 12 6 -0.0172 -4.7927 -0.7196 13 7 -0.6762 -5.9587 -0.9545 14 6 -1.9777 -6.0097 -0.8349 15 6 -2.6893 -7.2688 -1.0879 16 6 -4.0832 -7.3262 -0.9611 17 6 -4.7450 -8.5092 -1.1990 18 6 -4.0326 -9.6460 -1.5651 19 8 -4.6904 -10.8099 -1.7989 20 6 -3.8912 -11.9692 -2.0427 21 6 -3.7898 -12.3289 -3.5269 22 16 -3.6741 -14.0863 -3.0885 23 6 -4.6357 -13.2799 -1.7783 24 6 -2.6482 -9.5960 -1.6871 25 6 -1.9767 -8.4172 -1.4567 26 6 -0.5068 -3.5909 -1.2563 27 6 0.1470 -2.4219 -1.0189 28 1 -0.4850 0.8400 -0.0004 29 1 2.7187 -3.6316 0.8849 30 1 1.5312 -5.7208 0.4613 31 1 -2.5289 -5.1259 -0.5493 32 1 -4.6374 -6.4441 -0.6765 33 1 -5.8197 -8.5548 -1.1011 34 1 -2.9219 -11.9193 -1.5467 35 1 -4.6914 -12.0860 -4.0892 36 1 -2.8863 -11.9445 -4.0002 37 1 -4.4402 -13.6915 -0.7882 38 1 -5.7008 -13.2205 -2.0024 39 1 -2.0996 -10.4831 -1.9674 40 1 -0.9020 -8.3783 -1.5563 41 1 -1.4061 -3.5941 -1.8542 42 1 -0.2324 -1.4974 -1.4285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000283984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:09 Heat of formation + Delta-G solvation = 42.225099 kcal Electronic energy + Delta-G solvation = -24203.248629 eV Core-core repulsion = 20625.938901 eV Total energy + Delta-G solvation = -3577.309728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.103 amu Computer time = 8.26 seconds Orbital eigenvalues (eV) -41.29152 -39.99757 -38.96511 -37.02523 -35.69212 -34.96861 -32.01163 -31.88280 -31.49964 -30.13730 -27.42357 -27.04651 -24.92217 -24.49969 -23.03345 -22.86996 -21.81722 -20.64216 -19.58173 -19.35290 -17.90509 -17.52232 -17.14383 -16.76866 -16.58743 -16.30406 -15.84378 -15.79476 -15.47881 -14.97246 -14.82652 -14.59510 -14.28343 -14.09598 -14.01390 -13.95164 -13.79065 -13.57243 -13.14232 -13.02921 -12.85981 -12.73246 -12.54656 -12.41991 -12.09904 -11.81564 -11.74222 -11.69364 -11.49835 -11.34238 -10.98945 -10.48813 -9.96379 -9.63059 -9.26925 -8.97744 -8.73909 -8.59994 -6.35917 -0.23798 0.46494 0.64106 0.69571 0.74996 1.08247 1.37702 1.41330 1.51940 1.85114 2.13684 2.17455 2.68528 2.95678 3.17406 3.49363 3.59624 3.68585 3.71416 3.87385 3.94880 4.15859 4.26876 4.28357 4.32193 4.39350 4.41227 4.52559 4.59281 4.70883 4.73986 4.83209 4.97835 5.07340 5.11580 5.17577 5.29987 5.32706 5.50600 5.57019 5.63225 5.73764 5.81394 5.99140 6.07572 6.22194 6.36821 6.54679 6.80952 6.85309 7.33586 8.24022 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.035869 B = 0.001614 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.431139 B =17340.805397 C =17819.764167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.030 3.970 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.479 4.479 8 H 0.083 0.917 9 C 0.079 3.921 10 C -0.229 4.229 11 C -0.068 4.068 12 C -0.070 4.070 13 N -0.467 5.467 14 C 0.142 3.858 15 C -0.107 4.107 16 C -0.053 4.053 17 C -0.152 4.152 18 C 0.133 3.867 19 O -0.295 6.295 20 C 0.078 3.922 21 C -0.101 4.101 22 S -0.303 6.303 23 C -0.069 4.069 24 C -0.211 4.211 25 C -0.051 4.051 26 C -0.119 4.119 27 C -0.175 4.175 28 H 0.292 0.708 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 -18.988 -3.169 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.508 4.508 8 H 0.101 0.899 9 C 0.076 3.924 10 C -0.249 4.249 11 C -0.087 4.087 12 C -0.172 4.172 13 N -0.172 5.172 14 C -0.059 4.059 15 C -0.108 4.108 16 C -0.073 4.073 17 C -0.171 4.171 18 C 0.086 3.914 19 O -0.209 6.209 20 C 0.019 3.981 21 C -0.249 4.249 22 S -0.077 6.077 23 C -0.217 4.217 24 C -0.229 4.229 25 C -0.071 4.071 26 C -0.139 4.139 27 C -0.195 4.195 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.370 -20.619 -3.798 23.850 hybrid contribution -0.146 2.454 0.334 2.481 sum -11.516 -18.164 -3.465 21.785 Atomic orbital electron populations 1.69827 1.09076 1.30947 1.34490 1.26904 0.95673 1.04830 0.91170 0.85067 0.78985 0.75282 0.79614 1.18604 1.19052 1.17997 1.19911 0.96688 0.91592 1.42572 0.89875 1.18105 0.92292 0.93304 0.88649 1.20871 1.03527 0.93111 1.07410 1.20380 0.93459 0.97255 0.97628 1.18392 1.00131 0.88517 1.10170 1.68279 1.10140 1.26560 1.12214 1.24413 0.90950 0.95756 0.94742 1.18845 0.93739 0.92346 1.05879 1.21341 0.91972 0.98428 0.95539 1.20537 1.01433 0.90158 1.04953 1.19277 0.90772 0.86329 0.94993 1.86128 1.35339 1.14848 1.84549 1.24242 0.96509 0.83247 0.94121 1.25112 1.08130 0.90835 1.00842 1.89395 1.70433 1.14542 1.33364 1.24592 1.03494 0.91925 1.01713 1.21303 0.93344 0.99595 1.08690 1.21251 1.00331 0.91391 0.94110 1.21146 0.98673 0.92711 1.01365 1.20991 0.99449 0.96746 1.02316 0.89728 0.87294 0.86846 0.88398 0.82898 0.82677 0.85379 0.85868 0.87267 0.86145 0.85420 0.83467 0.85872 0.87878 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.46 10.74 21.84 0.23 -41.22 16 2 C 0.03 1.46 5.25 85.28 0.45 1.91 16 3 Si 0.99 36.69 29.58 68.60 2.03 38.72 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.48 -25.20 9.04 23.33 0.21 -24.99 16 8 H 0.08 4.16 7.87 -2.91 -0.02 4.14 16 9 C 0.08 4.29 5.57 -21.26 -0.12 4.17 16 10 C -0.23 -11.42 9.72 22.45 0.22 -11.20 16 11 C -0.07 -3.20 9.93 22.29 0.22 -2.98 16 12 C -0.07 -3.28 6.19 39.57 0.24 -3.03 16 13 N -0.47 -19.12 9.49 -181.94 -1.73 -20.84 16 14 C 0.14 4.86 9.83 87.09 0.86 5.72 16 15 C -0.11 -2.90 5.87 -20.13 -0.12 -3.02 16 16 C -0.05 -1.09 9.79 22.57 0.22 -0.87 16 17 C -0.15 -2.70 9.97 22.32 0.22 -2.47 16 18 C 0.13 2.40 6.69 22.67 0.15 2.55 16 19 O -0.30 -4.40 10.09 -90.46 -0.91 -5.31 16 20 C 0.08 0.87 3.22 30.62 0.10 0.97 16 21 C -0.10 -1.13 7.79 72.00 0.56 -0.57 16 22 S -0.30 -4.32 24.80 -56.49 -1.40 -5.72 16 23 C -0.07 -0.65 7.79 72.00 0.56 -0.09 16 24 C -0.21 -4.11 8.98 22.32 0.20 -3.91 16 25 C -0.05 -1.30 9.57 22.57 0.22 -1.08 16 26 C -0.12 -5.76 9.10 22.29 0.20 -5.56 16 27 C -0.17 -9.30 8.59 22.45 0.19 -9.10 16 28 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 29 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 30 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.10 3.29 7.52 -2.91 -0.02 3.26 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.13 1.32 6.10 -2.39 -0.01 1.30 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.15 2.17 5.96 -2.91 -0.02 2.15 16 40 H 0.12 3.48 7.54 -2.91 -0.02 3.46 16 41 H 0.10 4.56 7.67 -2.91 -0.02 4.53 16 42 H 0.11 6.05 6.10 -2.91 -0.02 6.04 16 Total: -1.00 -61.94 370.77 3.86 -58.09 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 1.04 Total: 29.86 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 4.59 Total: -53.56 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -1.49 Total: -62.07 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.91 Total: -5.31 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.40 Total: -5.72 kcal Total: -61.94 3.86 -58.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000283984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.310 kcal (2) G-P(sol) polarization free energy of solvation -61.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.27 seconds