Wall clock time and date at job start Tue Mar 31 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86796 * 119.99927 * 2 1 4 4 H 1.48505 * 109.47125 * 274.98228 * 3 2 1 5 5 H 1.48503 * 109.47379 * 34.98198 * 3 2 1 6 6 H 1.48501 * 109.47129 * 154.98125 * 3 2 1 7 7 C 1.40164 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99756 * 186.26772 * 7 2 1 9 9 C 1.41242 * 119.99900 * 6.26874 * 7 2 1 10 10 O 1.21856 * 119.99972 * 353.74098 * 9 7 2 11 11 N 1.34769 * 120.00069 * 173.74161 * 9 7 2 12 12 C 1.37931 * 120.00219 * 180.02562 * 11 9 7 13 13 N 1.30339 * 125.43498 * 0.02562 * 12 11 9 14 14 C 1.31258 * 117.06217 * 179.72846 * 13 12 11 15 15 C 1.34198 * 115.74457 * 0.46480 * 14 13 12 16 16 C 1.50707 * 125.89917 * 179.84129 * 15 14 13 17 17 C 1.50704 * 109.46839 * 89.71276 * 16 15 14 18 18 C 1.36130 * 120.17066 * 265.20846 * 17 16 15 19 19 C 1.39337 * 120.98628 * 180.26519 * 18 17 16 20 20 C 1.36123 * 120.98844 * 359.78090 * 19 18 17 21 21 C 1.40508 * 119.65366 * 359.97438 * 20 19 18 22 22 C 1.40546 * 121.28601 * 179.97438 * 21 20 19 23 23 C 1.36084 * 119.65109 * 180.02562 * 22 21 20 24 24 C 1.39378 * 120.99721 * 0.03818 * 23 22 21 25 25 C 1.36091 * 120.99079 * 359.97438 * 24 23 22 26 26 C 1.40496 * 120.17376 * 85.00297 * 17 16 15 27 27 S 1.76166 * 125.43772 * 180.02562 * 12 11 9 28 28 H 0.96999 * 120.00499 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00065 * 359.97438 * 11 9 7 30 30 H 1.07998 * 122.12769 * 180.26194 * 14 13 12 31 31 H 1.08996 * 109.47052 * 329.71325 * 16 15 14 32 32 H 1.09000 * 109.46941 * 209.71144 * 16 15 14 33 33 H 1.07996 * 119.50885 * 0.02562 * 18 17 16 34 34 H 1.07997 * 119.50373 * 179.75832 * 19 18 17 35 35 H 1.08005 * 120.17515 * 179.97438 * 20 19 18 36 36 H 1.08006 * 120.17592 * 0.04517 * 22 21 20 37 37 H 1.08004 * 119.50103 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.50817 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.17458 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.3823 2.1072 -1.3948 5 1 1.4942 2.6200 0.8027 6 1 3.5864 1.4121 0.5921 7 6 2.0070 -1.2138 0.0005 8 1 3.0822 -1.2165 0.1027 9 6 1.3072 -2.4334 -0.1325 10 8 0.0886 -2.4397 -0.1330 11 7 1.9870 -3.5902 -0.2588 12 6 1.3036 -4.7812 -0.3892 13 7 0.0067 -4.9105 -0.4042 14 6 -0.4707 -6.1253 -0.5427 15 6 0.4432 -7.1028 -0.6440 16 6 0.1511 -8.5724 -0.8059 17 6 0.0549 -8.9068 -2.2722 18 6 -1.1573 -8.9265 -2.8913 19 6 -1.2665 -9.2388 -4.2448 20 6 -0.1638 -9.5289 -4.9884 21 6 1.1051 -9.5136 -4.3852 22 6 2.2662 -9.8081 -5.1202 23 6 3.4784 -9.7840 -4.5022 24 6 3.5878 -9.4719 -3.1482 25 6 2.4854 -9.1816 -2.4048 26 6 1.2162 -9.1956 -3.0083 27 16 2.0442 -6.3702 -0.5622 28 1 -0.4851 0.8400 -0.0004 29 1 2.9570 -3.5852 -0.2588 30 1 -1.5315 -6.3259 -0.5699 31 1 -0.7928 -8.8113 -0.3160 32 1 0.9534 -9.1543 -0.3524 33 1 -2.0481 -8.7005 -2.3240 34 1 -2.2407 -9.2512 -4.7109 35 1 -0.2637 -9.7696 -6.0365 36 1 2.1969 -10.0520 -6.1701 37 1 4.3692 -10.0103 -5.0695 38 1 4.5619 -9.4594 -2.6822 39 1 2.5854 -8.9411 -1.3567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000319401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:29 Heat of formation + Delta-G solvation = 54.738816 kcal Electronic energy + Delta-G solvation = -24931.764856 eV Core-core repulsion = 21316.883331 eV Total energy + Delta-G solvation = -3614.881525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.083 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54437 -39.11412 -37.40905 -36.60748 -34.49471 -33.44452 -32.42697 -30.83299 -30.33689 -28.85089 -27.27092 -25.56602 -23.69984 -23.28472 -23.02768 -21.32264 -20.66846 -18.64688 -18.37333 -17.56600 -16.98167 -16.57066 -16.22276 -15.59601 -15.46665 -14.66104 -14.52911 -14.32718 -14.07759 -14.02736 -13.69507 -13.55284 -13.36399 -12.85912 -12.69866 -12.55028 -12.27528 -12.18597 -11.90046 -11.42948 -11.29844 -11.18853 -11.01180 -10.93145 -10.72561 -10.61907 -10.37957 -9.90852 -9.62398 -8.94663 -8.84699 -8.66359 -8.62009 -7.89465 -7.65446 -7.13047 -6.43586 -4.98080 0.46744 0.98310 1.44244 1.65242 2.01352 2.26069 2.96294 3.02407 3.09885 3.13723 3.65211 3.91334 4.06744 4.26526 4.40805 4.52296 4.70714 4.80482 4.87295 4.98087 5.09605 5.18895 5.30894 5.37019 5.41024 5.46275 5.49262 5.64814 5.66197 5.77242 5.92527 6.05980 6.15175 6.19769 6.22906 6.39497 6.49010 6.61909 6.66821 6.79739 6.97251 7.16612 7.32572 7.78943 7.92280 8.57865 8.72069 9.15650 10.31694 10.51225 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002731 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.949590 B =10248.398947 C =10676.665882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.087 3.913 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.530 3.470 10 O -0.515 6.515 11 N -0.638 5.638 12 C 0.360 3.640 13 N -0.490 5.490 14 C 0.095 3.905 15 C -0.274 4.274 16 C 0.012 3.988 17 C -0.058 4.058 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.050 4.050 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.095 4.095 26 C -0.043 4.043 27 S -0.007 6.007 28 H 0.275 0.725 29 H 0.403 0.597 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 -19.571 -6.750 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.091 0.909 9 C 0.336 3.664 10 O -0.392 6.392 11 N -0.287 5.287 12 C -0.011 4.011 13 N -0.212 5.212 14 C -0.058 4.058 15 C -0.397 4.397 16 C -0.028 4.028 17 C -0.058 4.058 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.050 4.050 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.114 4.114 26 C -0.043 4.043 27 S 0.241 5.759 28 H 0.086 0.914 29 H 0.238 0.762 30 H 0.179 0.821 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.133 -19.161 -6.691 20.712 hybrid contribution 0.159 0.707 -0.158 0.741 sum 4.293 -18.454 -6.848 20.147 Atomic orbital electron populations 1.70006 1.07347 1.28185 1.31384 1.25767 0.94689 1.00749 0.92506 0.86200 0.80201 0.80565 0.78979 1.19483 1.20129 1.18571 1.19887 0.94973 0.89720 1.52404 0.90892 1.17275 0.88170 0.81274 0.79655 1.90814 1.12749 1.83596 1.52027 1.44426 1.09653 1.03227 1.71416 1.25099 0.89875 0.90199 0.95889 1.66751 1.08509 1.22052 1.23870 1.21560 1.00490 0.85737 0.98013 1.24877 0.93165 0.99114 1.22573 1.18771 1.02964 0.89451 0.91573 1.19743 0.92572 0.97667 0.95817 1.20736 0.97359 1.00197 0.94880 1.20826 0.98699 0.99099 0.94153 1.20968 0.91713 1.01127 0.99613 1.18069 0.93953 1.00030 0.92957 1.20985 0.91993 1.00439 0.99429 1.20828 0.97594 1.00070 0.94962 1.20829 0.98713 0.99993 0.94280 1.21057 0.91742 0.98542 1.00012 1.17918 0.93484 1.00049 0.92872 1.84553 1.11200 1.03774 1.76357 0.91393 0.76221 0.82116 0.89170 0.90282 0.85817 0.86030 0.85851 0.85825 0.86174 0.86044 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.40 11.75 55.56 0.65 -20.75 16 2 C 0.09 2.30 5.49 -17.35 -0.10 2.21 16 3 Si 0.92 19.08 29.56 -169.99 -5.03 14.05 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 7 C -0.53 -14.37 9.28 -37.72 -0.35 -14.72 16 8 H 0.07 1.75 7.86 -52.49 -0.41 1.33 16 9 C 0.53 14.91 7.50 -15.12 -0.11 14.80 16 10 O -0.52 -16.65 13.53 5.05 0.07 -16.58 16 11 N -0.64 -14.63 5.35 -14.63 -0.08 -14.71 16 12 C 0.36 7.92 8.26 -87.80 -0.72 7.19 16 13 N -0.49 -11.65 8.65 -13.94 -0.12 -11.77 16 14 C 0.10 1.79 11.17 -19.22 -0.21 1.58 16 15 C -0.27 -4.37 5.84 -35.73 -0.21 -4.57 16 16 C 0.01 0.15 5.27 -29.03 -0.15 0.00 16 17 C -0.06 -0.73 5.12 -104.53 -0.54 -1.27 16 18 C -0.11 -1.33 9.57 -39.93 -0.38 -1.71 16 19 C -0.11 -1.19 9.95 -39.93 -0.40 -1.59 16 20 C -0.12 -1.28 9.77 -39.49 -0.39 -1.66 16 21 C -0.05 -0.62 5.74 -106.83 -0.61 -1.23 16 22 C -0.11 -1.17 9.77 -39.49 -0.39 -1.55 16 23 C -0.12 -1.17 9.95 -39.93 -0.40 -1.57 16 24 C -0.12 -1.29 9.95 -39.93 -0.40 -1.69 16 25 C -0.10 -1.17 8.93 -39.48 -0.35 -1.52 16 26 C -0.04 -0.57 5.74 -106.84 -0.61 -1.18 16 27 S -0.01 -0.12 22.04 -107.50 -2.37 -2.49 16 28 H 0.28 7.13 8.29 -40.82 -0.34 6.79 16 29 H 0.40 7.60 8.77 -40.82 -0.36 7.24 16 30 H 0.16 2.60 8.06 -52.49 -0.42 2.18 16 31 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 32 H 0.08 0.87 6.71 -51.93 -0.35 0.53 16 33 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.47 5.41 -52.49 -0.28 1.18 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -35.36 350.99 -11.82 -47.18 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.91 Total: 8.28 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -6.32 Total: -8.50 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.45 Total: -47.22 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.07 Total: -16.58 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.37 Total: -2.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.36 -11.82 -47.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000319401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.918 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds