Wall clock time and date at job start Tue Mar 31 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86796 * 119.99927 * 2 1 4 4 H 1.48505 * 109.47125 * 274.98228 * 3 2 1 5 5 H 1.48503 * 109.47379 * 34.98198 * 3 2 1 6 6 H 1.48501 * 109.47129 * 154.98125 * 3 2 1 7 7 C 1.40164 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99756 * 186.26772 * 7 2 1 9 9 C 1.41242 * 119.99900 * 6.26874 * 7 2 1 10 10 O 1.21856 * 119.99972 * 353.74098 * 9 7 2 11 11 N 1.34769 * 120.00069 * 173.74161 * 9 7 2 12 12 C 1.37931 * 120.00219 * 180.02562 * 11 9 7 13 13 N 1.30339 * 125.43498 * 0.02562 * 12 11 9 14 14 C 1.31258 * 117.06217 * 179.72846 * 13 12 11 15 15 C 1.34198 * 115.74457 * 0.46480 * 14 13 12 16 16 C 1.50707 * 125.89917 * 179.84129 * 15 14 13 17 17 C 1.50704 * 109.46839 * 89.71276 * 16 15 14 18 18 C 1.36130 * 120.17066 * 265.20846 * 17 16 15 19 19 C 1.39337 * 120.98628 * 180.26519 * 18 17 16 20 20 C 1.36123 * 120.98844 * 359.78090 * 19 18 17 21 21 C 1.40508 * 119.65366 * 359.97438 * 20 19 18 22 22 C 1.40546 * 121.28601 * 179.97438 * 21 20 19 23 23 C 1.36084 * 119.65109 * 180.02562 * 22 21 20 24 24 C 1.39378 * 120.99721 * 0.03818 * 23 22 21 25 25 C 1.36091 * 120.99079 * 359.97438 * 24 23 22 26 26 C 1.40496 * 120.17376 * 85.00297 * 17 16 15 27 27 S 1.76166 * 125.43772 * 180.02562 * 12 11 9 28 28 H 0.96999 * 120.00499 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00065 * 359.97438 * 11 9 7 30 30 H 1.07998 * 122.12769 * 180.26194 * 14 13 12 31 31 H 1.08996 * 109.47052 * 329.71325 * 16 15 14 32 32 H 1.09000 * 109.46941 * 209.71144 * 16 15 14 33 33 H 1.07996 * 119.50885 * 0.02562 * 18 17 16 34 34 H 1.07997 * 119.50373 * 179.75832 * 19 18 17 35 35 H 1.08005 * 120.17515 * 179.97438 * 20 19 18 36 36 H 1.08006 * 120.17592 * 0.04517 * 22 21 20 37 37 H 1.08004 * 119.50103 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.50817 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.17458 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.3823 2.1072 -1.3948 5 1 1.4942 2.6200 0.8027 6 1 3.5864 1.4121 0.5921 7 6 2.0070 -1.2138 0.0005 8 1 3.0822 -1.2165 0.1027 9 6 1.3072 -2.4334 -0.1325 10 8 0.0886 -2.4397 -0.1330 11 7 1.9870 -3.5902 -0.2588 12 6 1.3036 -4.7812 -0.3892 13 7 0.0067 -4.9105 -0.4042 14 6 -0.4707 -6.1253 -0.5427 15 6 0.4432 -7.1028 -0.6440 16 6 0.1511 -8.5724 -0.8059 17 6 0.0549 -8.9068 -2.2722 18 6 -1.1573 -8.9265 -2.8913 19 6 -1.2665 -9.2388 -4.2448 20 6 -0.1638 -9.5289 -4.9884 21 6 1.1051 -9.5136 -4.3852 22 6 2.2662 -9.8081 -5.1202 23 6 3.4784 -9.7840 -4.5022 24 6 3.5878 -9.4719 -3.1482 25 6 2.4854 -9.1816 -2.4048 26 6 1.2162 -9.1956 -3.0083 27 16 2.0442 -6.3702 -0.5622 28 1 -0.4851 0.8400 -0.0004 29 1 2.9570 -3.5852 -0.2588 30 1 -1.5315 -6.3259 -0.5699 31 1 -0.7928 -8.8113 -0.3160 32 1 0.9534 -9.1543 -0.3524 33 1 -2.0481 -8.7005 -2.3240 34 1 -2.2407 -9.2512 -4.7109 35 1 -0.2637 -9.7696 -6.0365 36 1 2.1969 -10.0520 -6.1701 37 1 4.3692 -10.0103 -5.0695 38 1 4.5619 -9.4594 -2.6822 39 1 2.5854 -8.9411 -1.3567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000319401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:28 Heat of formation + Delta-G solvation = 33.999377 kcal Electronic energy + Delta-G solvation = -24932.664186 eV Core-core repulsion = 21316.883331 eV Total energy + Delta-G solvation = -3615.780855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.083 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.40937 -40.76283 -39.18998 -37.48861 -35.81741 -34.99275 -34.44979 -31.90002 -31.16183 -29.98761 -29.08520 -26.94207 -25.19477 -24.18399 -23.86958 -22.97625 -21.68303 -20.36580 -20.01606 -18.40832 -18.25386 -17.92749 -17.38227 -17.15797 -16.98029 -16.06037 -15.85115 -15.53339 -15.40265 -15.23302 -14.83649 -14.57301 -14.40024 -14.36241 -14.05657 -13.84451 -13.61131 -13.27409 -13.15395 -12.86951 -12.72677 -12.71181 -12.16291 -12.08652 -12.00593 -11.82261 -11.68085 -11.30864 -10.91936 -10.82372 -10.50766 -10.07363 -9.66120 -9.49148 -8.84728 -8.64552 -8.41652 -7.06912 -0.41712 -0.03993 0.12967 0.14985 0.81851 1.14921 1.40116 1.40497 1.58426 2.05346 2.14777 2.19778 2.46822 2.67764 3.19746 3.60982 3.67820 3.87117 3.94155 4.00362 4.05300 4.14164 4.17319 4.30891 4.35604 4.51245 4.55675 4.66390 4.77214 4.81140 4.93236 5.09240 5.18676 5.20299 5.27114 5.36218 5.39268 5.55877 5.65939 5.67866 5.76008 5.87436 5.96391 6.02735 6.15529 6.68420 6.90968 7.41713 8.34653 8.52783 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002731 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.949590 B =10248.398947 C =10676.665882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.030 3.970 3 Si 1.007 2.993 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.243 1.243 7 C -0.559 4.559 8 H 0.098 0.902 9 C 0.519 3.481 10 O -0.574 6.574 11 N -0.641 5.641 12 C 0.304 3.696 13 N -0.540 5.540 14 C 0.056 3.944 15 C -0.239 4.239 16 C 0.013 3.987 17 C -0.080 4.080 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.075 4.075 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.064 4.064 27 S 0.079 5.921 28 H 0.281 0.719 29 H 0.419 0.581 30 H 0.178 0.822 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 -21.107 -7.890 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.189 4.189 3 Si 0.825 3.175 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.166 1.166 7 C -0.594 4.594 8 H 0.116 0.884 9 C 0.325 3.675 10 O -0.456 6.456 11 N -0.291 5.291 12 C -0.064 4.064 13 N -0.262 5.262 14 C -0.095 4.095 15 C -0.362 4.362 16 C -0.027 4.027 17 C -0.081 4.081 18 C -0.137 4.137 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.075 4.075 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.064 4.064 27 S 0.329 5.671 28 H 0.091 0.909 29 H 0.256 0.744 30 H 0.195 0.805 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.266 -20.779 -7.833 23.073 hybrid contribution -0.476 0.830 0.093 0.962 sum 5.790 -19.948 -7.739 22.166 Atomic orbital electron populations 1.70177 1.09916 1.29749 1.32878 1.27111 0.95495 1.05332 0.90943 0.84868 0.79015 0.74259 0.79340 1.18670 1.19586 1.16558 1.20466 0.96321 0.90133 1.52487 0.88387 1.17622 0.87761 0.83046 0.79039 1.90756 1.15012 1.85268 1.54543 1.43683 1.10112 1.03002 1.72345 1.25181 0.90568 0.91967 0.98709 1.66656 1.10605 1.25203 1.23772 1.21778 1.01861 0.85076 1.00833 1.25571 0.92697 1.00704 1.17228 1.18954 1.04843 0.86563 0.92290 1.19766 0.93101 0.99493 0.95720 1.21050 0.97630 0.99372 0.95620 1.21145 0.99909 0.99015 0.93980 1.21330 0.91294 1.00027 1.00836 1.18427 0.95242 1.00755 0.93078 1.21338 0.91650 0.99629 1.00593 1.21191 0.98556 0.99379 0.94914 1.21179 0.99227 0.98637 0.94770 1.21139 0.92101 1.00297 1.00217 1.18185 0.93954 1.00617 0.93642 1.84182 1.09921 0.98881 1.74150 0.90906 0.74380 0.80542 0.86782 0.88705 0.84495 0.83812 0.83454 0.83448 0.83464 0.84024 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.09 11.75 21.86 0.26 -47.83 16 2 C 0.03 1.61 5.49 85.34 0.47 2.08 16 3 Si 1.01 39.20 29.56 68.60 2.03 41.23 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.24 -8.61 7.11 99.48 0.71 -7.90 16 7 C -0.56 -30.79 9.28 23.48 0.22 -30.57 16 8 H 0.10 4.68 7.86 -2.91 -0.02 4.66 16 9 C 0.52 30.57 7.50 84.98 0.64 31.20 16 10 O -0.57 -39.42 13.53 -4.85 -0.07 -39.49 16 11 N -0.64 -30.50 5.35 -318.34 -1.70 -32.20 16 12 C 0.30 13.83 8.26 179.36 1.48 15.31 16 13 N -0.54 -26.83 8.65 -198.01 -1.71 -28.54 16 14 C 0.06 2.14 11.17 83.86 0.94 3.07 16 15 C -0.24 -7.40 5.84 24.77 0.14 -7.25 16 16 C 0.01 0.30 5.27 29.11 0.15 0.45 16 17 C -0.08 -1.94 5.12 -19.80 -0.10 -2.04 16 18 C -0.12 -2.61 9.57 22.04 0.21 -2.40 16 19 C -0.12 -2.44 9.95 22.04 0.22 -2.22 16 20 C -0.12 -2.33 9.77 22.33 0.22 -2.12 16 21 C -0.07 -1.72 5.74 -21.30 -0.12 -1.84 16 22 C -0.11 -2.13 9.77 22.33 0.22 -1.91 16 23 C -0.12 -2.12 9.95 22.04 0.22 -1.90 16 24 C -0.12 -2.30 9.95 22.04 0.22 -2.08 16 25 C -0.12 -2.72 8.93 22.33 0.20 -2.52 16 26 C -0.06 -1.60 5.74 -21.30 -0.12 -1.72 16 27 S 0.08 2.56 22.04 -56.49 -1.25 1.31 16 28 H 0.28 15.17 8.29 -92.71 -0.77 14.40 16 29 H 0.42 16.17 8.77 -92.71 -0.81 15.35 16 30 H 0.18 5.86 8.06 -2.91 -0.02 5.84 16 31 H 0.11 2.07 8.04 -2.39 -0.02 2.05 16 32 H 0.09 1.87 6.71 -2.39 -0.02 1.85 16 33 H 0.14 2.51 8.05 -2.91 -0.02 2.49 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.12 2.66 5.41 -2.91 -0.02 2.64 16 Total: -1.00 -82.58 350.99 3.06 -79.53 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.30 Total: 32.47 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.20 Total: -6.47 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -3.16 Total: -108.58 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.07 Total: -39.49 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.25 Total: 1.31 kcal Total: -82.58 3.06 -79.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000319401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.525 kcal (2) G-P(sol) polarization free energy of solvation -82.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds