Wall clock time and date at job start Tue Mar 31 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38328 * 119.87724 * 2 1 4 4 C 1.38014 * 120.11878 * 180.02562 * 3 2 1 5 5 C 1.39328 * 119.88009 * 359.97438 * 4 3 2 6 6 C 1.48416 * 120.12129 * 180.02562 * 5 4 3 7 7 C 1.39667 * 125.57894 * 179.71827 * 6 5 4 8 8 C 1.39610 * 107.49910 * 179.84007 * 7 6 5 9 9 C 1.40140 * 126.56229 * 180.19391 * 8 7 6 10 10 H 1.08001 * 119.99566 * 180.26730 * 9 8 7 11 11 C 1.40174 * 120.00103 * 0.26768 * 9 8 7 12 12 N 1.30753 * 120.00045 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99961 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47368 * 59.99951 * 13 11 9 15 15 H 1.48502 * 109.46839 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46821 * 299.99474 * 13 11 9 17 17 N 1.37858 * 106.87451 * 0.41692 * 8 7 6 18 18 C 1.39825 * 126.11813 * 179.74011 * 17 8 7 19 19 C 1.38955 * 120.06339 * 324.74712 * 18 17 8 20 20 C 1.38069 * 119.93367 * 179.76700 * 19 18 17 21 21 C 1.38419 * 120.06607 * 0.51315 * 20 19 18 22 22 Cl 1.73602 * 119.93705 * 179.76496 * 21 20 19 23 23 C 1.38412 * 120.12848 * 359.74015 * 21 20 19 24 24 C 1.38078 * 120.06594 * 0.02562 * 23 21 20 25 25 N 1.32140 * 125.57739 * 0.03040 * 6 5 4 26 26 C 1.39335 * 119.76153 * 0.28170 * 5 4 3 27 27 C 1.38023 * 119.87284 * 359.41758 * 26 5 4 28 28 H 1.09003 * 109.47509 * 90.00185 * 1 2 3 29 29 H 1.09004 * 109.46840 * 210.00044 * 1 2 3 30 30 H 1.09000 * 109.47543 * 329.99532 * 1 2 3 31 31 H 1.08000 * 119.94054 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.05683 * 180.02562 * 4 3 2 33 33 H 1.08000 * 126.24950 * 0.02562 * 7 6 5 34 34 H 0.97005 * 120.00412 * 180.02562 * 12 11 9 35 35 H 1.08001 * 120.03484 * 0.02562 * 19 18 17 36 36 H 1.08005 * 119.97053 * 180.23155 * 20 19 18 37 37 H 1.07999 * 119.97144 * 179.97438 * 23 21 20 38 38 H 1.07994 * 120.03530 * 180.02562 * 24 23 21 39 39 H 1.08005 * 120.06603 * 179.72305 * 26 5 4 40 40 H 1.08007 * 119.93655 * 180.30635 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1994 0.0000 4 6 3.5762 1.2053 -0.0005 5 6 4.2754 0.0001 -0.0005 6 6 5.7595 0.0001 -0.0005 7 6 6.5721 -1.1358 0.0051 8 6 7.8993 -0.7025 -0.0008 9 6 9.0422 -1.5135 -0.0019 10 1 10.0238 -1.0631 -0.0023 11 6 8.9113 -2.9091 -0.0025 12 7 7.7229 -3.4543 -0.0015 13 14 10.4348 -3.9901 -0.0032 14 1 11.2439 -3.7062 1.2092 15 1 10.0283 -5.4184 -0.0032 16 1 11.2433 -3.7051 -1.2158 17 7 7.8703 0.6757 -0.0001 18 6 8.9823 1.5235 0.0003 19 6 10.1313 1.1643 0.6942 20 6 11.2294 2.0012 0.6889 21 6 11.1828 3.2019 0.0019 22 17 12.5633 4.2545 0.0024 23 6 10.0378 3.5649 -0.6859 24 6 8.9382 2.7298 -0.6882 25 7 6.5283 1.0749 0.0000 26 6 3.5762 -1.2051 -0.0059 27 6 2.1960 -1.1993 0.0009 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6531 2.1330 -0.0004 32 1 4.1131 2.1423 -0.0001 33 1 6.2353 -2.1619 0.0097 34 1 7.6323 -4.4201 -0.0016 35 1 10.1668 0.2294 1.2338 36 1 12.1241 1.7208 1.2250 37 1 10.0041 4.5025 -1.2207 38 1 8.0452 3.0133 -1.2253 39 1 4.1133 -2.1422 -0.0105 40 1 1.6531 -2.1330 0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000481589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:27 Heat of formation + Delta-G solvation = 99.864118 kcal Electronic energy + Delta-G solvation = -24972.821501 eV Core-core repulsion = 21357.853050 eV Total energy + Delta-G solvation = -3614.968452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.088 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.91862 -38.85722 -38.08822 -36.17891 -34.07519 -33.30987 -31.57755 -30.85301 -30.55386 -29.20365 -28.08339 -26.12097 -25.54583 -22.63221 -22.48469 -22.04095 -21.05413 -19.68643 -18.83663 -17.84454 -16.46019 -16.14453 -15.56040 -15.03403 -14.89793 -14.56369 -14.42082 -13.96741 -13.69870 -13.54315 -13.21907 -13.04745 -12.95697 -12.90021 -12.44764 -12.19789 -12.05465 -11.89608 -11.78268 -11.66949 -11.48697 -11.23489 -11.06363 -10.81549 -10.74669 -10.62005 -10.48374 -9.99952 -9.72325 -9.31057 -8.98710 -8.72934 -8.50006 -8.17356 -7.59529 -6.93557 -6.83089 -4.76181 1.29718 1.62934 1.68753 1.86633 2.39304 2.80125 2.92704 2.94697 3.32049 3.57639 3.80105 3.93989 4.08499 4.66280 5.07401 5.12279 5.14625 5.16834 5.17630 5.35855 5.48088 5.54704 5.65627 5.68218 5.72774 5.89911 5.91375 5.97770 6.08433 6.22615 6.35461 6.41262 6.47472 6.56387 6.63158 6.75408 6.84812 6.93216 6.95214 6.97468 7.20506 7.33299 7.42525 7.59561 7.76056 8.17050 8.36429 8.54632 8.86603 9.23401 9.93816 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.009057 B = 0.003598 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.669358 B = 7779.895078 C =10762.306717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.128 4.128 4 C -0.099 4.099 5 C 0.010 3.990 6 C 0.113 3.887 7 C -0.340 4.340 8 C 0.251 3.749 9 C -0.437 4.437 10 H 0.088 0.912 11 C 0.076 3.924 12 N -0.772 5.772 13 Si 0.926 3.074 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.262 1.262 17 N -0.376 5.376 18 C 0.222 3.778 19 C -0.139 4.139 20 C -0.086 4.086 21 C -0.071 4.071 22 Cl -0.090 7.090 23 C -0.090 4.090 24 C -0.130 4.130 25 N -0.378 5.378 26 C -0.093 4.093 27 C -0.125 4.125 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.169 0.831 34 H 0.285 0.715 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 4.282 0.074 4.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.118 4.118 5 C 0.008 3.992 6 C -0.044 4.044 7 C -0.371 4.371 8 C 0.137 3.863 9 C -0.472 4.472 10 H 0.106 0.894 11 C -0.145 4.145 12 N -0.397 5.397 13 Si 0.750 3.250 14 H -0.186 1.186 15 H -0.199 1.199 16 H -0.186 1.186 17 N -0.155 5.155 18 C 0.125 3.875 19 C -0.160 4.160 20 C -0.106 4.106 21 C -0.099 4.099 22 Cl -0.061 7.061 23 C -0.109 4.109 24 C -0.151 4.151 25 N -0.200 5.200 26 C -0.113 4.113 27 C -0.143 4.143 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.186 0.814 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.240 5.407 0.074 5.853 hybrid contribution 0.838 -1.265 -0.061 1.519 sum -1.402 4.142 0.013 4.373 Atomic orbital electron populations 1.20730 0.91820 1.02212 1.01785 1.19854 0.95560 0.93384 1.01473 1.20866 0.94008 0.97109 1.02605 1.21258 0.93591 0.98086 0.98893 1.18100 0.89678 0.92954 0.98482 1.20416 0.91353 0.93285 0.99317 1.22159 0.89682 0.98695 1.26526 1.18848 0.95641 0.79423 0.92358 1.18976 0.92821 0.90608 1.44758 0.89365 1.25847 0.97920 0.98457 0.92326 1.69664 1.23754 1.13271 1.33020 0.86045 0.80546 0.78224 0.80214 1.18591 1.19861 1.18645 1.45927 1.02803 1.04034 1.62726 1.17450 0.85855 0.90213 0.93982 1.21262 0.92531 1.01770 1.00446 1.20770 0.98688 0.92228 0.98873 1.20717 0.89497 0.93970 1.05671 1.98321 1.43453 1.66460 1.97902 1.20750 0.91326 0.99819 0.99035 1.20913 0.98932 0.94581 1.00688 1.77315 0.85088 1.21223 1.36423 1.21275 0.93563 0.98200 0.98250 1.20876 0.93957 0.97142 1.02309 0.91676 0.91921 0.92016 0.86634 0.85753 0.81444 0.90386 0.83363 0.85018 0.85248 0.84837 0.85051 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.10 -1.46 5.88 -104.56 -0.62 -2.07 16 3 C -0.13 -1.95 9.68 -39.63 -0.38 -2.33 16 4 C -0.10 -1.81 9.68 -39.26 -0.38 -2.19 16 5 C 0.01 0.20 5.88 -104.89 -0.62 -0.41 16 6 C 0.11 2.75 6.95 -83.01 -0.58 2.17 16 7 C -0.34 -8.72 9.11 -38.54 -0.35 -9.07 16 8 C 0.25 6.46 6.59 -83.93 -0.55 5.90 16 9 C -0.44 -10.62 8.19 -38.14 -0.31 -10.94 16 10 H 0.09 2.00 5.46 -52.49 -0.29 1.72 16 11 C 0.08 1.74 5.50 -17.28 -0.10 1.65 16 12 N -0.77 -18.14 10.29 55.56 0.57 -17.57 16 13 Si 0.93 17.11 29.56 -169.99 -5.03 12.09 16 14 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 15 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 16 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 17 N -0.38 -9.18 3.79 -8.35 -0.03 -9.21 16 18 C 0.22 4.70 6.35 -83.68 -0.53 4.17 16 19 C -0.14 -2.62 8.33 -39.38 -0.33 -2.95 16 20 C -0.09 -1.37 9.82 -39.58 -0.39 -1.76 16 21 C -0.07 -1.10 6.32 -39.45 -0.25 -1.35 16 22 Cl -0.09 -1.20 28.95 -51.86 -1.50 -2.70 16 23 C -0.09 -1.41 9.82 -39.58 -0.39 -1.80 16 24 C -0.13 -2.41 9.76 -39.37 -0.38 -2.80 16 25 N -0.38 -9.32 11.93 33.27 0.40 -8.93 16 26 C -0.09 -1.71 9.56 -39.25 -0.38 -2.09 16 27 C -0.12 -1.91 9.68 -39.63 -0.38 -2.29 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.12 2.29 7.83 -52.49 -0.41 1.87 16 33 H 0.17 4.33 4.94 -52.49 -0.26 4.07 16 34 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 35 H 0.15 2.88 6.05 -52.49 -0.32 2.57 16 36 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.13 2.43 6.98 -52.48 -0.37 2.06 16 40 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -27.00 357.12 -10.91 -37.91 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.15 Total: 11.96 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -6.55 Total: -28.93 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.94 Total: -35.71 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.00 -10.91 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000481589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.774 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds