Wall clock time and date at job start Tue Mar 31 2020 05:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48504 * 109.46671 * 269.99662 * 3 2 1 5 5 H 1.48498 * 109.47447 * 30.00052 * 3 2 1 6 6 H 1.48501 * 109.47000 * 150.00465 * 3 2 1 7 7 C 1.39900 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99566 * 175.55668 * 7 2 1 9 9 C 1.41154 * 120.00531 * 355.55766 * 7 2 1 10 10 C 1.40862 * 120.16343 * 214.77948 * 9 7 2 11 11 C 1.36378 * 119.82541 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.17053 * 0.02856 * 11 10 9 13 13 N 1.39230 * 119.83552 * 179.97438 * 12 11 10 14 14 C 1.34786 * 120.00197 * 35.28074 * 13 12 11 15 15 O 1.21280 * 119.99761 * 355.71381 * 14 13 12 16 16 C 1.50697 * 119.99944 * 175.70823 * 14 13 12 17 17 N 1.46498 * 109.46682 * 180.02562 * 16 14 13 18 18 C 1.34780 * 126.25221 * 90.03167 * 17 16 14 19 19 O 1.21595 * 125.27760 * 359.95807 * 18 17 16 20 20 O 1.34232 * 109.44972 * 179.70164 * 18 17 16 21 21 C 1.35562 * 109.17804 * 0.26258 * 20 18 17 22 22 C 1.38614 * 132.99711 * 180.02562 * 21 20 18 23 23 C 1.38119 * 119.91831 * 179.97438 * 22 21 20 24 24 C 1.38406 * 120.31049 * 359.96800 * 23 22 21 25 25 C 1.38131 * 120.18919 * 0.05070 * 24 23 22 26 26 C 1.38613 * 119.82021 * 359.95202 * 25 24 23 27 27 C 1.39482 * 120.33053 * 0.24363 * 12 11 10 28 28 C 1.36379 * 120.16504 * 359.44994 * 27 12 11 29 29 H 0.97003 * 120.00321 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.08873 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.91707 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00311 * 215.28833 * 13 12 11 33 33 H 1.08999 * 109.46745 * 60.00641 * 16 14 13 34 34 H 1.08998 * 109.47182 * 300.00325 * 16 14 13 35 35 H 1.08001 * 120.03880 * 359.94546 * 22 21 20 36 36 H 1.08003 * 119.84210 * 179.97438 * 23 22 21 37 37 H 1.08002 * 119.90954 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.08991 * 179.97438 * 25 24 23 39 39 H 1.07997 * 119.91578 * 179.73135 * 27 12 11 40 40 H 1.08008 * 120.08022 * 180.25009 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0463 -1.4002 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.6999 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0719 9 6 1.3056 -2.4322 0.0958 10 6 1.8649 -3.5179 0.7976 11 6 1.1804 -4.6942 0.8848 12 6 -0.0702 -4.8239 0.2808 13 7 -0.7627 -6.0282 0.3738 14 6 -0.6809 -6.7677 1.4977 15 8 0.0563 -6.4240 2.3974 16 6 -1.5055 -8.0214 1.6365 17 7 -1.2399 -8.6389 2.9382 18 6 -1.9032 -8.3955 4.0859 19 8 -2.8297 -7.6179 4.2103 20 8 -1.3861 -9.1487 5.0693 21 6 -0.3684 -9.8932 4.5718 22 6 0.4898 -10.8214 5.1405 23 6 1.4538 -11.4346 4.3643 24 6 1.5672 -11.1273 3.0195 25 6 0.7168 -10.2034 2.4440 26 6 -0.2529 -9.5840 3.2168 27 6 -0.6279 -3.7551 -0.4206 28 6 0.0420 -2.5706 -0.5111 29 1 -0.4851 0.8400 0.0004 30 1 2.8334 -3.4191 1.2654 31 1 1.6077 -5.5275 1.4229 32 1 -1.3041 -6.3351 -0.3702 33 1 -1.2416 -8.7196 0.8421 34 1 -2.5636 -7.7703 1.5629 35 1 0.4051 -11.0645 6.1894 36 1 2.1220 -12.1573 4.8088 37 1 2.3231 -11.6110 2.4185 38 1 0.8071 -9.9646 1.3946 39 1 -1.5947 -3.8643 -0.8893 40 1 -0.3930 -1.7426 -1.0512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000818889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:00 Heat of formation + Delta-G solvation = -15.044715 kcal Electronic energy + Delta-G solvation = -27681.428452 eV Core-core repulsion = 23620.768015 eV Total energy + Delta-G solvation = -4060.660437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.43770 -39.87174 -38.78458 -37.71024 -37.22645 -35.89286 -34.52397 -33.03017 -31.08735 -30.48888 -29.64749 -29.22136 -28.17117 -25.00138 -23.69277 -23.01505 -22.67553 -21.53111 -20.78036 -19.83755 -18.86654 -18.07130 -17.86773 -17.35562 -16.77123 -16.69085 -16.38485 -15.42454 -15.21861 -15.08407 -14.88919 -14.41328 -14.21726 -14.09189 -13.93305 -13.51342 -13.20972 -12.80978 -12.65729 -12.56360 -12.45654 -12.15729 -11.75276 -11.59870 -11.42329 -11.23424 -11.15673 -11.05217 -11.03052 -10.76518 -10.10417 -9.57959 -9.52933 -9.27006 -9.10467 -8.96888 -8.37009 -7.60180 -6.93763 -6.65627 -4.38735 0.77812 0.85973 1.76089 2.35704 2.40860 2.62648 2.91376 3.04324 3.08028 3.11660 3.21467 3.26741 3.55271 3.95423 4.03452 4.30140 4.52810 4.65791 4.72094 4.80488 4.85649 4.87079 5.00477 5.07929 5.42223 5.60025 5.61569 5.89477 5.98015 6.03717 6.13740 6.24923 6.36835 6.65083 6.82965 6.97736 7.01143 7.13268 7.23892 7.48424 7.58222 7.65319 7.78090 8.00814 8.14959 8.26206 8.51629 8.62079 8.88517 8.94077 10.25383 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.002413 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.125051 B =11600.475802 C =11934.558763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.083 4.083 12 C -0.002 4.002 13 N -0.644 5.644 14 C 0.478 3.522 15 O -0.514 6.514 16 C 0.114 3.886 17 N -0.529 5.529 18 C 0.644 3.356 19 O -0.481 6.481 20 O -0.236 6.236 21 C 0.035 3.965 22 C -0.079 4.079 23 C -0.112 4.112 24 C -0.098 4.098 25 C -0.099 4.099 26 C 0.084 3.916 27 C -0.117 4.117 28 C -0.142 4.142 29 H 0.279 0.721 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.397 0.603 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -22.254 1.359 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.094 4.094 13 N -0.287 5.287 14 C 0.262 3.738 15 O -0.390 6.390 16 C -0.010 4.010 17 N -0.260 5.260 18 C 0.399 3.601 19 O -0.363 6.363 20 O -0.141 6.141 21 C -0.012 4.012 22 C -0.098 4.098 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.014 4.014 27 C -0.137 4.137 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.231 0.769 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.985 -21.320 2.300 21.467 hybrid contribution -0.098 0.901 -0.347 0.971 sum -1.082 -20.419 1.953 20.541 Atomic orbital electron populations 1.69757 1.07316 1.28836 1.37774 1.25899 0.94962 1.01254 0.92516 0.86179 0.80250 0.80399 0.79063 1.19474 1.20254 1.18692 1.19512 0.94771 0.90212 1.44534 0.90551 1.17735 0.92262 0.91991 0.88088 1.20798 1.01295 0.94941 1.05589 1.20363 0.92777 0.97852 0.99299 1.17225 0.94260 0.85724 1.12162 1.42860 1.48765 1.21381 1.15725 1.20706 0.84270 0.85762 0.83081 1.90750 1.38387 1.70136 1.39699 1.21444 1.02678 0.94548 0.82372 1.45217 1.31361 1.39099 1.10330 1.18397 0.82753 0.80684 0.78302 1.91173 1.28168 1.35478 1.81437 1.85002 1.43202 1.49731 1.36210 1.19009 0.92993 0.98502 0.90667 1.20032 0.93764 0.94921 1.01081 1.20931 0.97953 1.00461 0.93757 1.21004 0.98454 0.96951 0.95246 1.20125 0.94139 0.97628 1.00102 1.18526 0.94218 0.94089 0.94587 1.20312 0.98312 0.93067 1.02049 1.21206 0.97316 0.95541 1.02151 0.91046 0.88576 0.87665 0.76896 0.86084 0.85559 0.84185 0.84139 0.84343 0.84832 0.88963 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.13 10.60 55.55 0.59 -20.54 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 19.03 29.56 -169.99 -5.03 14.01 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.25 9.02 -37.85 -0.34 -12.59 16 8 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.72 5.55 -106.81 -0.59 2.13 16 10 C -0.21 -5.22 9.74 -39.26 -0.38 -5.60 16 11 C -0.08 -1.97 8.61 -39.79 -0.34 -2.31 16 12 C 0.00 -0.04 6.31 -83.57 -0.53 -0.56 16 13 N -0.64 -10.53 5.30 -9.74 -0.05 -10.58 16 14 C 0.48 7.95 7.73 -10.98 -0.08 7.86 16 15 O -0.51 -11.16 13.85 5.56 0.08 -11.09 16 16 C 0.11 1.30 6.52 -5.20 -0.03 1.27 16 17 N -0.53 -7.29 2.29 -120.31 -0.28 -7.57 16 18 C 0.64 10.63 9.07 54.06 0.49 11.12 16 19 O -0.48 -9.32 17.81 -19.00 -0.34 -9.66 16 20 O -0.24 -3.54 10.72 -22.00 -0.24 -3.78 16 21 C 0.03 0.43 7.35 -38.99 -0.29 0.14 16 22 C -0.08 -0.69 10.06 -39.49 -0.40 -1.08 16 23 C -0.11 -0.74 10.03 -39.56 -0.40 -1.14 16 24 C -0.10 -0.68 10.04 -39.56 -0.40 -1.08 16 25 C -0.10 -0.90 10.04 -39.48 -0.40 -1.30 16 26 C 0.08 1.01 6.84 -83.79 -0.57 0.44 16 27 C -0.12 -2.63 9.90 -39.79 -0.39 -3.02 16 28 C -0.14 -3.63 8.61 -39.26 -0.34 -3.97 16 29 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 30 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.11 2.47 6.22 -52.48 -0.33 2.14 16 32 H 0.40 4.67 8.82 -40.82 -0.36 4.31 16 33 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.13 1.24 8.06 -51.93 -0.42 0.82 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 37 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.13 3.49 6.13 -52.48 -0.32 3.17 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -35.09 354.17 -8.95 -44.03 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -3.93 Total: 7.89 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -5.09 Total: -8.06 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.26 Total: -38.69 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.50 Total: -24.52 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.09 -8.95 -44.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000818889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.989 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds