Wall clock time and date at job start Tue Mar 31 2020 07:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99812 * 2 1 4 4 O 1.20822 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99745 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.46495 * 120.00010 * 96.41369 * 6 5 3 8 8 C 1.50693 * 109.47401 * 269.43666 * 7 6 5 9 9 C 1.37646 * 120.12859 * 266.15722 * 8 7 6 10 10 C 1.38606 * 120.25048 * 180.29631 * 9 8 7 11 11 C 1.38657 * 120.49877 * 359.44681 * 10 9 8 12 12 C 1.37591 * 120.25107 * 0.55532 * 11 10 9 13 13 C 1.40702 * 120.13002 * 86.18446 * 8 7 6 14 14 C 1.41389 * 120.24359 * 359.95105 * 13 8 7 15 15 H 1.08002 * 120.00218 * 325.55228 * 14 13 8 16 16 C 1.39946 * 120.00003 * 145.54375 * 14 13 8 17 17 N 1.30822 * 119.99795 * 4.22322 * 16 14 13 18 18 Si 1.86798 * 120.00211 * 184.21946 * 16 14 13 19 19 H 1.48499 * 109.47141 * 90.00249 * 18 16 14 20 20 H 1.48501 * 109.47247 * 210.00349 * 18 16 14 21 21 H 1.48505 * 109.47109 * 330.00329 * 18 16 14 22 22 C 1.39678 * 119.99751 * 276.42179 * 6 5 3 23 23 C 1.38912 * 120.07282 * 179.71939 * 22 6 5 24 24 C 1.38099 * 119.92496 * 179.76790 * 23 22 6 25 25 C 1.38289 * 120.07247 * 0.50424 * 24 23 22 26 26 C 1.50700 * 119.92419 * 179.76786 * 25 24 23 27 27 C 1.38286 * 120.15002 * 359.75085 * 25 24 23 28 28 C 1.38099 * 120.07548 * 359.97438 * 27 25 24 29 29 H 1.08994 * 109.47479 * 59.99429 * 1 2 3 30 30 H 1.09002 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46780 * 299.99569 * 1 2 3 32 32 H 1.09002 * 109.47651 * 60.00137 * 5 3 2 33 33 H 1.09006 * 109.47293 * 300.00402 * 5 3 2 34 34 H 1.08999 * 109.46894 * 149.43650 * 7 6 5 35 35 H 1.09001 * 109.46816 * 29.44104 * 7 6 5 36 36 H 1.08002 * 119.87099 * 0.02772 * 9 8 7 37 37 H 1.08001 * 119.75101 * 179.70743 * 10 9 8 38 38 H 1.08002 * 119.87471 * 180.30106 * 11 10 9 39 39 H 1.08004 * 120.13173 * 179.74334 * 12 11 10 40 40 H 0.96995 * 119.99621 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.03284 * 0.02562 * 23 22 6 42 42 H 1.07996 * 119.96594 * 180.25397 * 24 23 22 43 43 H 1.09006 * 109.46685 * 269.98176 * 26 25 24 44 44 H 1.09001 * 109.47321 * 29.97843 * 26 25 24 45 45 H 1.09003 * 109.47189 * 149.98563 * 26 25 24 46 46 H 1.08005 * 119.96362 * 179.97438 * 27 25 24 47 47 H 1.08004 * 120.04053 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.3258 3.3412 1.2612 8 6 3.0928 3.9801 1.8462 9 6 2.8094 5.3016 1.5854 10 6 1.6792 5.8935 2.1272 11 6 0.8160 5.1606 2.9274 12 6 1.0793 3.8382 3.2015 13 6 2.2270 3.2283 2.6617 14 6 2.5076 1.8700 2.9361 15 1 2.9760 1.2526 2.1838 16 6 2.1787 1.3255 4.1826 17 7 1.5375 2.0492 5.0638 18 14 2.6550 -0.4346 4.5882 19 1 4.0015 -0.4513 5.2142 20 1 1.6634 -1.0110 5.5314 21 1 2.6788 -1.2408 3.3413 22 6 4.0495 3.3887 -1.2015 23 6 4.4376 4.7225 -1.2020 24 6 4.5082 5.4190 -2.3923 25 6 4.1830 4.7931 -3.5818 26 6 4.2561 5.5579 -4.8783 27 6 3.7911 3.4669 -3.5843 28 6 3.7239 2.7629 -2.3982 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 5.0789 4.1072 1.0760 35 1 4.7209 2.6052 1.9614 36 1 3.4725 5.8806 0.9598 37 1 1.4671 6.9322 1.9212 38 1 -0.0644 5.6306 3.3404 39 1 0.4078 3.2703 3.8284 40 1 1.3092 1.6717 5.9276 41 1 4.6878 5.2129 -0.2728 42 1 4.8138 6.4548 -2.3939 43 1 3.2943 6.0314 -5.0755 44 1 5.0295 6.3226 -4.8059 45 1 4.4973 4.8728 -5.6911 46 1 3.5374 2.9812 -4.5150 47 1 3.4181 1.7270 -2.4008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001515393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:35 Heat of formation + Delta-G solvation = -22.120372 kcal Electronic energy + Delta-G solvation = -30756.885954 eV Core-core repulsion = 26869.866220 eV Total energy + Delta-G solvation = -3887.019734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.09954 -39.05610 -37.71081 -36.19846 -35.27129 -33.59721 -31.78556 -31.25323 -30.08968 -29.42612 -28.54121 -26.69713 -26.34256 -24.99854 -23.60825 -22.21837 -20.95844 -20.83401 -20.07331 -19.26960 -17.27350 -17.20975 -17.04573 -16.22488 -15.70313 -15.34757 -15.16982 -14.81669 -14.53212 -14.01304 -13.86531 -13.60423 -13.51523 -13.41875 -13.13909 -13.03261 -12.72747 -12.51398 -12.26631 -11.97212 -11.77052 -11.60802 -11.58116 -11.53456 -11.17429 -11.10064 -11.02185 -10.93485 -10.62938 -10.44414 -10.29220 -10.16138 -9.98461 -9.54353 -9.48278 -9.22195 -9.00508 -8.54778 -7.32511 -7.15497 -6.79003 -6.62093 -4.42313 1.81804 1.94116 2.74865 2.93048 2.98145 3.04874 3.07623 3.23010 3.26295 3.82763 3.92986 4.25706 4.71686 5.08767 5.22083 5.24287 5.36148 5.42507 5.48970 5.52775 5.55167 5.65168 5.70433 5.76213 5.78077 5.83799 5.94098 5.96117 6.00144 6.20060 6.23616 6.29840 6.35196 6.41740 6.53816 6.70381 6.77180 6.79913 7.01814 7.02636 7.09375 7.25008 7.31780 7.45332 7.64289 7.70150 7.89159 7.98210 8.06904 8.13664 8.33849 8.52155 8.66057 8.92850 9.03115 10.28013 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012369 B = 0.004809 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.247396 B = 5820.658676 C = 6836.327577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.371 6.371 3 C 0.435 3.565 4 O -0.462 6.462 5 C 0.136 3.864 6 N -0.593 5.593 7 C 0.181 3.819 8 C -0.199 4.199 9 C -0.083 4.083 10 C -0.227 4.227 11 C -0.112 4.112 12 C -0.146 4.146 13 C 0.136 3.864 14 C -0.472 4.472 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.810 5.810 18 Si 0.898 3.102 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.259 1.259 22 C 0.234 3.766 23 C -0.184 4.184 24 C -0.074 4.074 25 C -0.160 4.160 26 C -0.100 4.100 27 C -0.074 4.074 28 C -0.199 4.199 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.276 0.724 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.112 0.888 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -2.178 -11.077 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.288 6.288 3 C 0.274 3.726 4 O -0.344 6.344 5 C 0.010 3.990 6 N -0.301 5.301 7 C 0.060 3.940 8 C -0.202 4.202 9 C -0.101 4.101 10 C -0.246 4.246 11 C -0.131 4.131 12 C -0.165 4.165 13 C 0.133 3.867 14 C -0.503 4.503 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.438 5.438 18 Si 0.723 3.277 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.183 1.183 22 C 0.132 3.868 23 C -0.206 4.206 24 C -0.093 4.093 25 C -0.162 4.162 26 C -0.157 4.157 27 C -0.093 4.093 28 C -0.221 4.221 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.087 0.913 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.130 0.870 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.182 -1.981 -10.654 11.615 hybrid contribution -0.441 -0.682 0.538 0.974 sum 3.741 -2.663 -10.116 11.109 Atomic orbital electron populations 1.23079 0.77321 1.02486 1.02402 1.86434 1.22785 1.34434 1.85182 1.24377 0.92801 0.81689 0.73771 1.90738 1.66114 1.35711 1.41873 1.20903 0.87821 0.85082 1.05225 1.46649 1.69941 1.08851 1.04689 1.20211 0.94757 0.96156 0.82837 1.19986 0.98890 0.93754 1.07562 1.20386 0.96660 0.94574 0.98520 1.20387 0.99221 0.98226 1.06765 1.20739 0.97957 0.95507 0.98896 1.21539 0.98263 0.93906 1.02806 1.17281 0.88689 0.92499 0.88195 1.19549 1.36471 0.95487 0.98820 0.90922 1.25807 0.93044 0.98863 0.96315 1.69764 1.30815 1.36897 1.06275 0.86450 0.79178 0.82623 0.79459 1.19464 1.20316 1.18271 1.17788 0.92329 0.91171 0.85549 1.20768 1.08036 0.93174 0.98637 1.20694 0.98264 0.98690 0.91620 1.19523 1.06798 0.94866 0.95046 1.20596 1.01350 0.99234 0.94492 1.20608 0.98102 0.93697 0.96865 1.20542 1.09731 1.00147 0.91724 0.92797 0.89143 0.91609 0.88306 0.86126 0.91633 0.89972 0.89571 0.89851 0.89832 0.85819 0.91296 0.85679 0.86781 0.92304 0.92397 0.92489 0.86972 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.56 101.05 1.07 1.71 16 2 O -0.37 -6.63 10.57 -39.27 -0.41 -7.04 16 3 C 0.44 8.45 5.75 36.00 0.21 8.66 16 4 O -0.46 -10.67 14.26 -18.75 -0.27 -10.93 16 5 C 0.14 2.25 4.96 -5.19 -0.03 2.23 16 6 N -0.59 -10.58 2.13 -174.49 -0.37 -10.95 16 7 C 0.18 3.45 4.90 -5.20 -0.03 3.43 16 8 C -0.20 -4.57 4.93 -103.91 -0.51 -5.08 16 9 C -0.08 -1.87 9.27 -39.66 -0.37 -2.24 16 10 C -0.23 -5.29 10.05 -39.29 -0.39 -5.69 16 11 C -0.11 -2.76 10.02 -39.66 -0.40 -3.16 16 12 C -0.15 -3.85 8.68 -38.87 -0.34 -4.19 16 13 C 0.14 3.44 4.41 -106.82 -0.47 2.97 16 14 C -0.47 -11.53 6.93 -37.74 -0.26 -11.79 16 15 H 0.07 1.65 3.09 -52.49 -0.16 1.49 16 16 C 0.07 1.81 5.42 -17.34 -0.09 1.72 16 17 N -0.81 -20.61 10.59 55.55 0.59 -20.02 16 18 Si 0.90 18.14 29.56 -169.99 -5.03 13.12 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 C 0.23 4.07 6.38 -83.78 -0.53 3.54 16 23 C -0.18 -3.07 8.69 -39.38 -0.34 -3.41 16 24 C -0.07 -1.10 9.69 -39.61 -0.38 -1.48 16 25 C -0.16 -2.26 5.88 -104.59 -0.62 -2.87 16 26 C -0.10 -1.08 10.01 36.01 0.36 -0.72 16 27 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 28 C -0.20 -3.18 9.11 -39.38 -0.36 -3.54 16 29 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 32 H 0.10 1.32 6.57 -51.93 -0.34 0.98 16 33 H 0.12 1.93 6.11 -51.93 -0.32 1.61 16 34 H 0.07 1.13 6.16 -51.93 -0.32 0.81 16 35 H 0.08 1.55 6.84 -51.93 -0.36 1.20 16 36 H 0.09 1.74 6.02 -52.49 -0.32 1.42 16 37 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.08 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.42 6.13 -52.48 -0.32 3.10 16 40 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 41 H 0.13 2.08 4.27 -52.48 -0.22 1.85 16 42 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 45 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 46 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 47 H 0.11 1.66 6.18 -52.48 -0.32 1.33 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -29.78 374.37 -9.76 -39.54 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.04 Total: 12.03 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -3.87 Total: -21.38 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.22 Total: -30.97 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.68 Total: -17.98 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.78 -9.76 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001515393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.418 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds