Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46509 * 119.99980 * 2 1 4 4 C 1.50708 * 109.46959 * 270.00307 * 3 2 1 5 5 H 1.08002 * 120.00003 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99614 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99849 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00207 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46841 * 89.99848 * 8 6 4 10 10 H 1.48497 * 109.46988 * 209.99711 * 8 6 4 11 11 H 1.48493 * 109.46949 * 329.99983 * 8 6 4 12 12 C 1.39105 * 120.00422 * 180.02562 * 2 1 3 13 13 C 1.39248 * 119.90243 * 0.02562 * 12 2 1 14 14 C 1.37091 * 120.09584 * 180.02562 * 13 12 2 15 15 C 1.40035 * 119.90377 * 359.97438 * 14 13 12 16 16 C 1.46908 * 120.09538 * 179.72617 * 15 14 13 17 17 N 1.30561 * 120.00258 * 179.97438 * 16 15 14 18 18 C 1.36525 * 119.99968 * 179.97438 * 17 16 15 19 19 C 1.39920 * 120.00377 * 314.73014 * 18 17 16 20 20 C 1.36529 * 119.99213 * 179.73724 * 19 18 17 21 21 C 1.39890 * 120.00346 * 0.53369 * 20 19 18 22 22 C 1.47426 * 119.99844 * 179.69730 * 21 20 19 23 23 O 1.21513 * 120.00492 * 180.02562 * 22 21 20 24 24 O 1.34770 * 119.99907 * 0.02562 * 22 21 20 25 25 C 1.39896 * 120.00866 * 359.72201 * 21 20 19 26 26 C 1.36520 * 120.00049 * 0.02562 * 25 21 20 27 27 C 1.40035 * 119.81354 * 0.02562 * 15 14 13 28 28 C 1.37099 * 119.90113 * 359.97438 * 27 15 14 29 29 H 1.09001 * 109.47028 * 269.99727 * 1 2 3 30 30 H 1.08998 * 109.47336 * 29.99806 * 1 2 3 31 31 H 1.09000 * 109.47528 * 149.99808 * 1 2 3 32 32 H 1.08995 * 109.46680 * 30.00072 * 3 2 1 33 33 H 1.08994 * 109.47144 * 150.00535 * 3 2 1 34 34 H 0.97000 * 120.00052 * 179.97438 * 7 6 4 35 35 H 1.08003 * 119.95021 * 0.02562 * 13 12 2 36 36 H 1.07998 * 120.05138 * 180.02562 * 14 13 12 37 37 H 1.08004 * 119.99586 * 359.97438 * 16 15 14 38 38 H 1.07995 * 120.00156 * 359.97438 * 19 18 17 39 39 H 1.07999 * 119.99632 * 180.25162 * 20 19 18 40 40 H 0.96702 * 117.00066 * 180.02562 * 24 22 21 41 41 H 1.07997 * 119.99948 * 180.02562 * 25 21 20 42 42 H 1.08006 * 120.00009 * 179.97438 * 26 25 21 43 43 H 1.07996 * 120.04981 * 180.02562 * 27 15 14 44 44 H 1.08001 * 119.94802 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4209 5 1 2.0980 1.0959 -2.2418 6 6 3.1258 2.8781 -1.6728 7 7 3.3454 3.2575 -2.9127 8 14 3.7316 3.9300 -0.2529 9 1 5.1050 3.5093 0.1240 10 1 3.7465 5.3566 -0.6650 11 1 2.8249 3.7603 0.9108 12 6 2.1605 -1.2046 -0.0005 13 6 1.4623 -2.4094 -0.0016 14 6 2.1439 -3.5989 -0.0016 15 6 3.5442 -3.6012 -0.0011 16 6 4.2788 -4.8734 0.0050 17 7 5.5844 -4.8734 0.0050 18 6 6.2670 -6.0557 0.0112 19 6 5.8784 -7.0835 0.8774 20 6 6.5578 -8.2677 0.8795 21 6 7.6494 -8.4495 0.0238 22 6 8.3871 -9.7259 0.0310 23 8 9.3356 -9.8837 -0.7120 24 8 8.0096 -10.7177 0.8616 25 6 8.0414 -7.4200 -0.8385 26 6 7.3590 -6.2376 -0.8446 27 6 4.2424 -2.3873 0.0000 28 6 3.5529 -1.2023 0.0000 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5137 34 1 3.8216 4.0838 -3.0900 35 1 0.3823 -2.4067 -0.0025 36 1 1.6016 -4.5329 -0.0029 37 1 3.7388 -5.8087 0.0095 38 1 5.0386 -6.9415 1.5414 39 1 6.2553 -9.0626 1.5452 40 1 8.5240 -11.5359 0.8308 41 1 8.8839 -7.5606 -1.4994 42 1 7.6619 -5.4427 -1.5100 43 1 5.3224 -2.3846 0.0000 44 1 4.0906 -0.2657 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001745298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -3.393765 kcal Electronic energy + Delta-G solvation = -26436.644292 eV Core-core repulsion = 22512.322172 eV Total energy + Delta-G solvation = -3924.322120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 12.42 seconds Orbital eigenvalues (eV) -40.71441 -39.56689 -39.11272 -36.74800 -36.35744 -35.33944 -32.76233 -31.56549 -31.10925 -30.89742 -29.23830 -28.41054 -26.12078 -24.73208 -23.13329 -22.90006 -22.13146 -21.68904 -20.54915 -19.52599 -18.43976 -17.84574 -17.07813 -16.96664 -16.83618 -15.91021 -15.63721 -15.24354 -14.94371 -14.84968 -14.44007 -14.14366 -13.97519 -13.84650 -13.70228 -13.30124 -13.22462 -13.09228 -12.70211 -12.54512 -12.47143 -11.94816 -11.80560 -11.73114 -11.66868 -11.51108 -11.22028 -11.01262 -10.94784 -10.72071 -10.39527 -10.28653 -9.95600 -9.65090 -9.42598 -9.09459 -8.75741 -8.62683 -8.38764 -6.61719 -6.24004 -4.25771 0.08950 1.12762 1.23834 1.92388 2.22033 2.72342 2.76488 3.15498 3.22384 3.24348 3.55050 3.78442 4.14491 4.23673 4.33695 4.50898 4.60881 4.72975 4.86079 4.99652 5.05588 5.15134 5.25703 5.29325 5.35302 5.55165 5.67612 5.75033 5.79822 5.80918 5.87961 5.98259 6.04706 6.08893 6.15178 6.16879 6.17289 6.32134 6.48160 6.57159 6.57823 6.77963 6.84615 6.96784 7.24706 7.40030 7.57793 7.77984 7.87077 8.05887 8.35926 8.81859 9.34456 10.88702 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.001875 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.630759 B =14931.037958 C =15953.704715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.595 5.595 3 C 0.215 3.785 4 C -0.540 4.540 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.271 3.729 13 C -0.230 4.230 14 C -0.025 4.025 15 C -0.190 4.190 16 C 0.256 3.744 17 N -0.528 5.528 18 C 0.155 3.845 19 C -0.184 4.184 20 C -0.037 4.037 21 C -0.163 4.163 22 C 0.530 3.470 23 O -0.520 6.520 24 O -0.515 6.515 25 C -0.033 4.033 26 C -0.132 4.132 27 C -0.007 4.007 28 C -0.204 4.204 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.413 0.587 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -21.824 9.178 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.296 5.296 3 C 0.094 3.906 4 C -0.578 4.578 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.528 5.528 8 Si 0.698 3.302 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.190 1.190 12 C 0.159 3.841 13 C -0.253 4.253 14 C -0.046 4.046 15 C -0.195 4.195 16 C 0.061 3.939 17 N -0.234 5.234 18 C 0.052 3.948 19 C -0.204 4.204 20 C -0.056 4.056 21 C -0.165 4.165 22 C 0.376 3.624 23 O -0.410 6.410 24 O -0.327 6.327 25 C -0.052 4.052 26 C -0.152 4.152 27 C -0.028 4.028 28 C -0.227 4.227 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.271 0.729 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.546 -20.568 8.871 22.453 hybrid contribution 0.313 -0.491 0.566 0.812 sum 1.858 -21.059 9.436 23.152 Atomic orbital electron populations 1.21633 0.80458 1.02894 1.00282 1.46873 1.05040 1.04383 1.73278 1.19806 0.92137 0.80390 0.98278 1.21391 1.37624 1.07555 0.91278 0.90433 1.24889 0.95247 0.97203 0.95531 1.69889 1.40779 1.23449 1.18674 0.86919 0.80030 0.80309 0.82905 1.19743 1.20849 1.19021 1.18227 0.91672 0.86019 0.88146 1.20392 0.99520 0.91024 1.14370 1.20722 0.92426 0.97276 0.94170 1.18282 0.92533 0.91347 1.17312 1.24391 0.89354 0.96414 0.83761 1.68416 1.09260 1.24764 1.20943 1.19347 0.94758 0.87441 0.93212 1.21485 1.02285 0.93492 1.03171 1.21014 0.92279 0.97034 0.95254 1.18965 1.00664 0.92584 1.04283 1.20873 0.81380 0.83856 0.76333 1.90893 1.28304 1.81735 1.40101 1.84573 1.60560 1.27050 1.60480 1.20886 0.97801 0.91204 0.95286 1.20759 0.95826 0.97987 1.00613 1.20999 0.99846 0.90624 0.91349 1.20752 0.92387 0.99243 1.10309 0.93864 0.90779 0.91906 0.95012 0.95068 0.92335 0.85987 0.86305 0.88104 0.85184 0.84571 0.72902 0.84292 0.84314 0.85396 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.18 59.84 0.61 1.96 16 2 N -0.59 -11.12 2.98 -180.97 -0.54 -11.66 16 3 C 0.21 4.67 3.97 -5.18 -0.02 4.65 16 4 C -0.54 -14.20 9.94 -34.44 -0.34 -14.54 16 5 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 8 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 12 C 0.27 4.77 6.55 -83.81 -0.55 4.22 16 13 C -0.23 -3.31 9.16 -39.62 -0.36 -3.67 16 14 C -0.02 -0.31 9.76 -39.32 -0.38 -0.69 16 15 C -0.19 -2.62 5.87 -105.04 -0.62 -3.23 16 16 C 0.26 3.04 9.83 -14.58 -0.14 2.90 16 17 N -0.53 -7.04 9.50 -9.01 -0.09 -7.13 16 18 C 0.16 1.87 6.18 -84.52 -0.52 1.35 16 19 C -0.18 -1.85 9.12 -39.57 -0.36 -2.21 16 20 C -0.04 -0.34 9.55 -39.58 -0.38 -0.72 16 21 C -0.16 -1.71 5.88 -104.92 -0.62 -2.32 16 22 C 0.53 5.44 8.26 34.47 0.28 5.73 16 23 O -0.52 -6.74 17.12 -19.28 -0.33 -7.07 16 24 O -0.51 -3.63 12.66 -40.68 -0.52 -4.14 16 25 C -0.03 -0.35 9.53 -39.58 -0.38 -0.73 16 26 C -0.13 -1.51 9.93 -39.57 -0.39 -1.90 16 27 C -0.01 -0.12 9.55 -39.32 -0.38 -0.49 16 28 C -0.20 -3.70 9.16 -39.62 -0.36 -4.06 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 31 H 0.06 0.81 6.17 -51.93 -0.32 0.49 16 32 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.03 0.68 5.60 -51.93 -0.29 0.39 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 1.50 6.11 -52.48 -0.32 1.18 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.10 0.90 7.52 -52.48 -0.39 0.50 16 38 H 0.13 1.10 7.67 -52.49 -0.40 0.69 16 39 H 0.14 0.99 7.59 -52.49 -0.40 0.59 16 40 H 0.41 1.06 9.11 45.56 0.42 1.48 16 41 H 0.14 1.37 7.63 -52.49 -0.40 0.97 16 42 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 43 H 0.13 2.01 7.54 -52.49 -0.40 1.61 16 44 H 0.13 2.64 6.11 -52.49 -0.32 2.32 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -32.18 379.21 -9.14 -41.32 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.48 Total: 4.80 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -5.01 Total: -11.83 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.15 Total: -43.99 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.85 Total: -11.21 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.18 -9.14 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001745298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.927 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.42 seconds