Wall clock time and date at job start Tue Mar 31 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38301 * 119.96794 * 2 1 4 4 C 1.38255 * 120.11563 * 180.02562 * 3 2 1 5 5 C 1.38160 * 120.06011 * 359.68334 * 4 3 2 6 6 C 1.38743 * 119.93830 * 0.57274 * 5 4 3 7 7 O 1.35869 * 120.06017 * 179.72195 * 6 5 4 8 8 C 1.36116 * 117.99799 * 354.61210 * 7 6 5 9 9 C 1.34803 * 120.22334 * 266.17229 * 8 7 6 10 10 O 1.33951 * 122.74328 * 179.73576 * 9 8 7 11 11 C 1.34831 * 122.40893 * 0.58670 * 10 9 8 12 12 C 1.38774 * 120.94944 * 179.71336 * 11 10 9 13 13 C 1.38590 * 119.73441 * 179.72685 * 12 11 10 14 14 O 1.35613 * 119.72500 * 179.97438 * 13 12 11 15 15 C 1.34810 * 116.99677 * 354.46396 * 14 13 12 16 16 H 1.08004 * 120.00216 * 5.07806 * 15 14 13 17 17 C 1.38695 * 120.00107 * 185.07805 * 15 14 13 18 18 N 1.31530 * 119.99690 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00307 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47046 * 89.99897 * 19 17 15 21 21 H 1.48498 * 109.47156 * 209.99753 * 19 17 15 22 22 H 1.48493 * 109.46914 * 330.00112 * 19 17 15 23 23 C 1.39488 * 120.55612 * 359.97438 * 13 12 11 24 24 C 1.36503 * 120.36961 * 0.02562 * 23 13 12 25 25 C 1.39613 * 119.74513 * 0.02562 * 24 23 13 26 26 C 1.42389 * 120.22935 * 86.19630 * 8 7 6 27 27 O 1.21966 * 121.38455 * 359.95643 * 26 8 7 28 28 C 1.38107 * 119.97239 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47227 * 270.01902 * 1 2 3 30 30 H 1.09000 * 109.47453 * 30.01811 * 1 2 3 31 31 H 1.09000 * 109.47300 * 150.01820 * 1 2 3 32 32 H 1.07994 * 119.94171 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.96704 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.03007 * 180.29707 * 5 4 3 35 35 H 1.08005 * 118.62570 * 0.02562 * 9 8 7 36 36 H 1.08000 * 120.13421 * 359.74427 * 12 11 10 37 37 H 0.97004 * 119.99589 * 179.97438 * 18 17 15 38 38 H 1.08005 * 119.81099 * 180.02562 * 23 13 12 39 39 H 1.08002 * 120.12612 * 180.02562 * 24 23 13 40 40 H 1.08001 * 120.02852 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2017 -0.0005 5 6 4.2755 0.0077 0.0055 6 6 3.5849 -1.1956 0.0002 7 8 4.2660 -2.3712 0.0004 8 6 5.6221 -2.3240 -0.1068 9 6 6.2114 -2.4304 -1.3146 10 8 7.5400 -2.3854 -1.4790 11 6 8.3918 -2.2413 -0.4437 12 6 9.7639 -2.2043 -0.6483 13 6 10.6162 -2.0496 0.4336 14 8 11.9570 -2.0141 0.2335 15 6 12.3952 -2.2488 -1.0195 16 1 11.6866 -2.3721 -1.8253 17 6 13.7561 -2.3322 -1.2741 18 7 14.6190 -2.1816 -0.2929 19 14 14.3634 -2.6568 -3.0106 20 1 14.5630 -1.3647 -3.7148 21 1 15.6511 -3.3943 -2.9548 22 1 13.3588 -3.4694 -3.7424 23 6 10.1065 -1.9302 1.7265 24 6 8.7592 -1.9648 1.9431 25 6 7.8878 -2.1212 0.8636 26 6 6.4280 -2.1625 1.0559 27 8 5.9302 -2.0627 2.1648 28 6 2.1969 -1.1964 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6563 2.1325 0.0004 33 1 4.1174 2.1387 -0.0010 34 1 5.3554 0.0111 0.0100 35 1 5.5859 -2.5524 -2.1866 36 1 10.1659 -2.2955 -1.6465 37 1 15.5708 -2.2403 -0.4709 38 1 10.7817 -1.8097 2.5608 39 1 8.3688 -1.8716 2.9458 40 1 1.6569 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001915111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:59 Heat of formation + Delta-G solvation = -50.237825 kcal Electronic energy + Delta-G solvation = -27542.380145 eV Core-core repulsion = 23447.900869 eV Total energy + Delta-G solvation = -4094.479276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.75988 -40.35150 -39.04135 -38.50727 -37.63404 -36.06784 -32.70020 -32.69141 -32.12187 -30.49277 -30.07885 -29.03197 -27.08020 -26.02178 -24.48459 -23.55298 -22.64904 -22.21435 -21.38277 -19.43834 -18.67371 -18.23825 -17.73011 -17.16308 -16.46638 -16.16006 -15.89417 -15.71232 -15.28339 -14.81035 -14.55445 -14.53776 -14.33847 -13.99972 -13.93208 -13.68757 -13.52642 -13.48639 -13.19097 -12.96746 -12.75929 -12.37523 -12.03577 -11.96362 -11.73180 -11.52541 -11.49068 -11.17070 -11.00957 -10.97872 -10.66316 -9.86100 -9.47263 -9.31560 -9.15777 -8.91899 -8.27446 -8.11165 -7.73101 -6.83974 -4.40501 0.75464 1.20112 1.29686 1.32729 1.98924 2.45409 2.90039 2.95247 3.00803 3.02943 3.42244 3.62489 3.67996 4.22463 4.33400 4.65067 4.68555 4.73753 4.75782 4.83214 4.92031 5.06111 5.13246 5.20671 5.25936 5.36457 5.37422 5.53955 5.58450 5.71703 5.75010 5.92885 5.97069 6.00457 6.22035 6.29197 6.33931 6.42361 6.43746 6.69660 6.69914 6.86341 7.01066 7.09201 7.38826 7.52464 7.60161 7.99524 8.59336 9.20028 10.31122 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.002407 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.309611 B =11627.790071 C =12046.129858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.158 4.158 4 C -0.077 4.077 5 C -0.194 4.194 6 C 0.127 3.873 7 O -0.227 6.227 8 C -0.129 4.129 9 C 0.133 3.867 10 O -0.210 6.210 11 C 0.181 3.819 12 C -0.262 4.262 13 C 0.194 3.806 14 O -0.144 6.144 15 C -0.395 4.395 16 H 0.102 0.898 17 C 0.045 3.955 18 N -0.841 5.841 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.263 1.263 23 C -0.197 4.197 24 C 0.005 3.995 25 C -0.310 4.310 26 C 0.416 3.584 27 O -0.480 6.480 28 C -0.149 4.149 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.197 0.803 36 H 0.148 0.852 37 H 0.278 0.722 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.784 3.216 -4.055 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.176 4.176 4 C -0.096 4.096 5 C -0.213 4.213 6 C 0.084 3.916 7 O -0.139 6.139 8 C -0.174 4.174 9 C 0.066 3.934 10 O -0.114 6.114 11 C 0.137 3.863 12 C -0.282 4.282 13 C 0.135 3.865 14 O -0.043 6.043 15 C -0.470 4.470 16 H 0.120 0.880 17 C -0.163 4.163 18 N -0.472 5.472 19 Si 0.771 3.229 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.187 1.187 23 C -0.216 4.216 24 C -0.014 4.014 25 C -0.313 4.313 26 C 0.303 3.697 27 O -0.364 6.364 28 C -0.168 4.168 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.214 0.786 36 H 0.165 0.835 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.489 3.103 -3.503 19.072 hybrid contribution 0.409 -0.080 -0.784 0.888 sum -18.080 3.024 -4.287 18.826 Atomic orbital electron populations 1.20786 0.90736 1.02847 1.02543 1.19663 0.95966 0.92213 0.97571 1.20929 0.94066 0.97491 1.05157 1.20944 0.94154 0.97419 0.97044 1.21272 1.00339 0.92256 1.07397 1.19364 0.91671 0.84731 0.95818 1.84536 1.14774 1.27368 1.87195 1.20081 0.83811 1.18653 0.94846 1.23908 0.81484 0.89682 0.98374 1.83148 1.14623 1.76909 1.36701 1.18998 0.88640 0.95018 0.83687 1.20209 0.88295 1.18301 1.01411 1.19128 0.84464 0.90570 0.92289 1.83960 1.15583 1.72262 1.32530 1.21587 0.92162 1.50563 0.82710 0.88037 1.25481 0.94591 0.95635 1.00625 1.70019 1.03105 1.41952 1.32153 0.85589 0.78888 0.79158 0.79233 1.19400 1.19854 1.18702 1.20083 0.94959 1.11438 0.95116 1.20259 0.91411 0.92086 0.97650 1.19958 0.94442 1.23433 0.93449 1.18811 0.87904 0.74682 0.88334 1.90687 1.76505 1.42348 1.26832 1.20216 0.90412 0.98708 1.07437 0.90929 0.91363 0.91375 0.85980 0.85714 0.85871 0.78602 0.83463 0.91189 0.85048 0.84866 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.05 -0.57 5.88 -104.65 -0.62 -1.18 16 3 C -0.16 -1.66 9.70 -39.55 -0.38 -2.05 16 4 C -0.08 -0.92 10.04 -39.60 -0.40 -1.32 16 5 C -0.19 -2.75 9.13 -39.42 -0.36 -3.11 16 6 C 0.13 1.85 6.66 -39.19 -0.26 1.59 16 7 O -0.23 -3.58 9.84 -19.07 -0.19 -3.77 16 8 C -0.13 -2.05 4.16 -39.20 -0.16 -2.21 16 9 C 0.13 1.74 11.18 29.51 0.33 2.07 16 10 O -0.21 -3.23 9.74 5.18 0.05 -3.18 16 11 C 0.18 3.29 6.77 -38.49 -0.26 3.03 16 12 C -0.26 -5.22 9.12 -39.25 -0.36 -5.58 16 13 C 0.19 4.23 6.65 -38.99 -0.26 3.97 16 14 O -0.14 -3.67 9.74 0.53 0.01 -3.66 16 15 C -0.40 -9.84 9.48 30.90 0.29 -9.55 16 16 H 0.10 2.30 5.17 -52.48 -0.27 2.03 16 17 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 18 N -0.84 -22.28 13.67 55.48 0.76 -21.52 16 19 Si 0.95 18.38 29.55 -169.99 -5.02 13.35 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 C -0.20 -3.83 9.92 -39.74 -0.39 -4.22 16 24 C 0.00 0.09 9.61 -39.69 -0.38 -0.30 16 25 C -0.31 -5.82 5.89 -104.80 -0.62 -6.44 16 26 C 0.42 7.80 6.44 -34.30 -0.22 7.58 16 27 O -0.48 -10.19 17.22 -9.92 -0.17 -10.36 16 28 C -0.15 -1.83 9.64 -39.42 -0.38 -2.21 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.12 1.85 6.47 -52.49 -0.34 1.52 16 35 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.15 2.86 5.60 -52.49 -0.29 2.57 16 37 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 39 H 0.13 2.25 7.80 -52.49 -0.41 1.85 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -30.05 354.80 -7.21 -37.26 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -3.83 Total: 5.88 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -4.17 Total: -19.36 kcal Atomic # 7 Polarization: -22.28 SS G_CDS: 0.76 Total: -21.52 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.30 Total: -20.97 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.05 -7.21 -37.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001915111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.979 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds