Wall clock time and date at job start Tue Mar 31 2020 05:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38274 * 119.94248 * 2 1 4 4 C 1.38134 * 120.05582 * 179.97438 * 3 2 1 5 5 C 1.38767 * 119.94587 * 0.02562 * 4 3 2 6 6 O 1.35874 * 120.06095 * 180.02562 * 5 4 3 7 7 C 1.36116 * 117.99748 * 174.88236 * 6 5 4 8 8 C 1.34803 * 120.22305 * 266.16942 * 7 6 5 9 9 O 1.33951 * 122.74328 * 179.74062 * 8 7 6 10 10 C 1.34831 * 122.40893 * 0.58670 * 9 8 7 11 11 C 1.38774 * 120.94944 * 179.71336 * 10 9 8 12 12 C 1.38595 * 119.72867 * 179.72242 * 11 10 9 13 13 O 1.35613 * 119.72070 * 180.02562 * 12 11 10 14 14 C 1.34818 * 116.99639 * 354.46535 * 13 12 11 15 15 H 1.07998 * 120.00513 * 5.08282 * 14 13 12 16 16 C 1.38701 * 119.99998 * 185.07877 * 14 13 12 17 17 N 1.31521 * 119.99999 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99915 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47359 * 89.99463 * 18 16 14 20 20 H 1.48501 * 109.47322 * 209.99955 * 18 16 14 21 21 H 1.48505 * 109.46985 * 329.99855 * 18 16 14 22 22 C 1.39480 * 120.56480 * 359.97438 * 12 11 10 23 23 C 1.36513 * 120.36338 * 359.97438 * 22 12 11 24 24 C 1.39603 * 119.75056 * 0.03207 * 23 22 12 25 25 C 1.42385 * 120.22600 * 86.19832 * 7 6 5 26 26 O 1.21970 * 121.38951 * 359.97438 * 25 7 6 27 27 C 1.38765 * 119.88113 * 0.27219 * 5 4 3 28 28 C 1.38138 * 119.93523 * 359.40481 * 27 5 4 29 29 H 1.09008 * 109.46956 * 89.99765 * 1 2 3 30 30 H 1.08998 * 109.47555 * 209.99495 * 1 2 3 31 31 H 1.08995 * 109.47060 * 330.00240 * 1 2 3 32 32 H 1.07997 * 119.97230 * 0.02562 * 3 2 1 33 33 H 1.08008 * 120.02669 * 180.02562 * 4 3 2 34 34 H 1.08006 * 118.62586 * 0.02562 * 8 7 6 35 35 H 1.08000 * 120.13440 * 359.75039 * 11 10 9 36 36 H 0.97000 * 120.00077 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.81856 * 179.97438 * 22 12 11 38 38 H 1.08003 * 120.12264 * 180.02562 * 23 22 12 39 39 H 1.07998 * 120.03626 * 179.70979 * 27 5 4 40 40 H 1.08009 * 119.96893 * 180.33715 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2735 -0.0001 0.0005 6 8 5.6323 -0.0002 0.0016 7 6 6.2711 -1.1973 0.1088 8 6 6.6574 -1.6546 1.3166 9 8 7.2844 -2.8268 1.4809 10 6 7.5878 -3.6354 0.4455 11 6 8.2435 -4.8412 0.6499 12 6 8.5379 -5.6556 -0.4322 13 8 9.1782 -6.8342 -0.2322 14 6 9.5991 -7.0969 1.0214 15 1 9.3498 -6.4226 1.8273 16 6 10.3524 -8.2334 1.2761 17 7 10.7626 -8.4899 2.4991 18 14 10.7842 -9.3995 -0.1178 19 1 12.0724 -8.9847 -0.7292 20 1 10.9102 -10.7806 0.4132 21 1 9.7131 -9.3602 -1.1458 22 6 8.1802 -5.2738 -1.7252 23 6 7.5339 -4.0910 -1.9416 24 6 7.2305 -3.2597 -0.8618 25 6 6.5364 -1.9748 -1.0542 26 8 6.2019 -1.5934 -2.1634 27 6 3.5785 -1.2011 -0.0057 28 6 2.1971 -1.1982 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6557 2.1327 0.0004 33 1 4.1171 2.1371 0.0010 34 1 6.4486 -1.0526 2.1887 35 1 8.5229 -5.1440 1.6482 36 1 11.2897 -9.2845 2.6772 37 1 8.4159 -5.9176 -2.5598 38 1 7.2584 -3.7995 -2.9444 39 1 4.1169 -2.1373 -0.0105 40 1 1.6556 -2.1327 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001915121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:04 Heat of formation + Delta-G solvation = -47.670927 kcal Electronic energy + Delta-G solvation = -27565.650253 eV Core-core repulsion = 23471.282285 eV Total energy + Delta-G solvation = -4094.367967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.81779 -40.38344 -39.21766 -38.55736 -37.71520 -36.20494 -32.78425 -32.66498 -31.58310 -31.06910 -30.41868 -29.43096 -26.64211 -26.02511 -24.49495 -23.42759 -22.90918 -22.09155 -21.39602 -19.49832 -19.06452 -18.40981 -17.80482 -17.13663 -16.60194 -16.07111 -15.80486 -15.50766 -15.34871 -14.88115 -14.66802 -14.38795 -14.24816 -14.13487 -14.00086 -13.77789 -13.66508 -13.54289 -13.42809 -13.01035 -12.68402 -12.51196 -12.35691 -12.08337 -11.71939 -11.55597 -11.46693 -11.12278 -11.03478 -10.95967 -10.51057 -9.84867 -9.51472 -9.36785 -9.19595 -9.12977 -8.19737 -8.15439 -7.87616 -6.78302 -4.44122 0.70313 1.18823 1.21736 1.26626 1.89375 2.40522 2.90448 3.04181 3.07085 3.19021 3.37180 3.60145 3.95129 4.13506 4.28811 4.36684 4.67325 4.68840 4.71407 4.76124 4.81539 4.97692 5.10073 5.14403 5.21602 5.39806 5.42400 5.48471 5.58373 5.64351 5.73727 5.85129 5.87601 5.92113 6.15280 6.19366 6.25886 6.36108 6.45596 6.65423 6.67932 6.73703 6.94599 7.32876 7.39749 7.45166 7.62988 7.92443 8.52799 9.07734 10.26569 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.002413 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.280387 B =11603.241729 C =11670.741515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.126 4.126 3 C -0.085 4.085 4 C -0.144 4.144 5 C 0.118 3.882 6 O -0.227 6.227 7 C -0.130 4.130 8 C 0.135 3.865 9 O -0.208 6.208 10 C 0.180 3.820 11 C -0.250 4.250 12 C 0.203 3.797 13 O -0.184 6.184 14 C -0.395 4.395 15 H 0.115 0.885 16 C 0.070 3.930 17 N -0.855 5.855 18 Si 0.907 3.093 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.256 1.256 22 C -0.199 4.199 23 C 0.005 3.995 24 C -0.304 4.304 25 C 0.416 3.584 26 O -0.478 6.478 27 C -0.184 4.184 28 C -0.081 4.081 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.199 0.801 35 H 0.154 0.846 36 H 0.287 0.713 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.124 0.876 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 13.238 -1.559 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.162 4.162 5 C 0.075 3.925 6 O -0.139 6.139 7 C -0.175 4.175 8 C 0.068 3.932 9 O -0.111 6.111 10 C 0.136 3.864 11 C -0.270 4.270 12 C 0.146 3.854 13 O -0.085 6.085 14 C -0.469 4.469 15 H 0.132 0.868 16 C -0.137 4.137 17 N -0.489 5.489 18 Si 0.731 3.269 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.180 1.180 22 C -0.218 4.218 23 C -0.014 4.014 24 C -0.306 4.306 25 C 0.303 3.697 26 O -0.361 6.361 27 C -0.203 4.203 28 C -0.099 4.099 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.215 0.785 35 H 0.172 0.828 36 H 0.097 0.903 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.170 13.112 -1.885 18.680 hybrid contribution 0.304 -0.575 -0.304 0.718 sum -12.866 12.538 -2.190 18.097 Atomic orbital electron populations 1.20710 0.91099 1.02540 1.02135 1.19836 0.96195 0.93032 1.03566 1.20797 0.92810 0.97716 0.98984 1.20367 0.93714 0.96004 1.06147 1.19386 0.82083 0.94381 0.96656 1.84542 1.16119 1.25910 1.87284 1.20044 1.09886 0.92834 0.94741 1.23953 0.87622 0.83168 0.98467 1.83173 1.65096 1.26342 1.36527 1.19006 0.94255 0.89457 0.83705 1.20335 1.10603 0.94261 1.01789 1.18865 0.89922 0.84343 0.92274 1.83566 1.61759 1.30011 1.33196 1.20959 1.33194 1.10765 0.82008 0.86753 1.24583 0.94578 0.97029 0.97542 1.69612 1.32788 1.27215 1.19244 0.86148 0.80167 0.79145 0.81410 1.19358 1.20256 1.17961 1.20076 1.07734 0.99055 0.94915 1.20269 0.92125 0.91202 0.97757 1.20034 1.16284 1.00863 0.93453 1.18817 0.77720 0.84771 0.88407 1.90693 1.46916 1.71700 1.26807 1.21270 0.95342 0.97159 1.06539 1.20844 0.93163 0.97805 0.98109 0.91447 0.91717 0.91731 0.85388 0.85081 0.78461 0.82838 0.90275 0.85009 0.84674 0.85838 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.13 -1.30 5.88 -104.60 -0.62 -1.92 16 3 C -0.09 -0.86 9.69 -39.61 -0.38 -1.24 16 4 C -0.14 -1.70 9.99 -39.42 -0.39 -2.09 16 5 C 0.12 1.67 6.66 -39.19 -0.26 1.41 16 6 O -0.23 -3.49 9.84 -19.09 -0.19 -3.68 16 7 C -0.13 -2.01 4.16 -39.21 -0.16 -2.18 16 8 C 0.14 1.74 11.18 29.51 0.33 2.07 16 9 O -0.21 -3.18 9.74 5.18 0.05 -3.13 16 10 C 0.18 3.21 6.77 -38.48 -0.26 2.95 16 11 C -0.25 -4.91 9.12 -39.25 -0.36 -5.27 16 12 C 0.20 4.17 6.65 -38.99 -0.26 3.91 16 13 O -0.18 -4.29 8.57 0.51 0.00 -4.29 16 14 C -0.40 -9.92 9.94 30.90 0.31 -9.62 16 15 H 0.12 2.92 5.40 -52.49 -0.28 2.64 16 16 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 17 N -0.85 -22.34 13.96 55.48 0.77 -21.56 16 18 Si 0.91 19.42 28.62 -169.99 -4.86 14.55 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 22 C -0.20 -3.56 9.92 -39.74 -0.39 -3.96 16 23 C 0.01 0.09 9.61 -39.69 -0.38 -0.29 16 24 C -0.30 -5.47 5.89 -104.80 -0.62 -6.09 16 25 C 0.42 7.56 6.44 -34.30 -0.22 7.34 16 26 O -0.48 -9.82 17.22 -9.92 -0.17 -9.99 16 27 C -0.18 -2.55 9.13 -39.42 -0.36 -2.91 16 28 C -0.08 -0.95 9.69 -39.60 -0.38 -1.33 16 29 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.20 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.15 3.11 5.60 -52.49 -0.29 2.81 16 36 H 0.29 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 38 H 0.14 2.13 7.80 -52.48 -0.41 1.72 16 39 H 0.12 1.81 6.47 -52.49 -0.34 1.47 16 40 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -29.05 353.68 -7.05 -36.11 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.84 Total: 4.65 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -4.15 Total: -17.99 kcal Atomic # 7 Polarization: -22.34 SS G_CDS: 0.77 Total: -21.56 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.30 Total: -21.08 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.86 Total: 14.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.05 -7.05 -36.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001915121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.564 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds