Wall clock time and date at job start Tue Mar 31 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35880 * 116.99781 * 2 1 4 4 C 1.38529 * 120.12239 * 0.02562 * 3 2 1 5 5 C 1.38220 * 120.06893 * 179.97438 * 4 3 2 6 6 C 1.38369 * 120.30661 * 0.02562 * 5 4 3 7 7 C 1.38037 * 120.22856 * 0.02562 * 6 5 4 8 8 C 1.39303 * 119.92818 * 359.71966 * 7 6 5 9 9 C 1.48300 * 120.14805 * 180.28204 * 8 7 6 10 10 C 1.35822 * 120.64561 * 65.27354 * 9 8 7 11 11 O 1.33567 * 122.55069 * 179.97438 * 10 9 8 12 12 C 1.34767 * 123.29587 * 0.02785 * 11 10 9 13 13 C 1.38861 * 120.56797 * 180.02562 * 12 11 10 14 14 C 1.38580 * 119.81511 * 179.97438 * 13 12 11 15 15 O 1.35610 * 119.70951 * 179.97438 * 14 13 12 16 16 C 1.34812 * 116.99804 * 354.42979 * 15 14 13 17 17 H 1.08000 * 120.00417 * 5.05598 * 16 15 14 18 18 C 1.38697 * 119.99501 * 185.05641 * 16 15 14 19 19 N 1.31519 * 120.00038 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99902 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47416 * 89.99516 * 20 18 16 22 22 H 1.48498 * 109.47540 * 209.99960 * 20 18 16 23 23 H 1.48509 * 109.47134 * 329.99807 * 20 18 16 24 24 C 1.39464 * 120.57910 * 359.97438 * 14 13 12 25 25 C 1.36519 * 120.30702 * 0.02562 * 24 14 13 26 26 C 1.39612 * 119.76143 * 359.97438 * 25 24 14 27 27 C 1.47289 * 120.63912 * 244.99053 * 9 8 7 28 28 O 1.21909 * 121.61586 * 0.02562 * 27 9 8 29 29 H 1.09000 * 109.46920 * 59.99496 * 1 2 3 30 30 H 1.08993 * 109.47102 * 299.99740 * 1 2 3 31 31 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.96226 * 359.97298 * 4 3 2 33 33 H 1.08008 * 119.84917 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.88723 * 179.97438 * 6 5 4 35 35 H 1.08002 * 120.03152 * 179.97438 * 7 6 5 36 36 H 1.08001 * 118.72097 * 359.97438 * 10 9 8 37 37 H 1.08007 * 120.09051 * 359.97438 * 13 12 11 38 38 H 0.97005 * 120.00066 * 180.02562 * 19 18 16 39 39 H 1.08001 * 119.85064 * 180.02562 * 24 14 13 40 40 H 1.07992 * 120.12391 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2938 2.3741 0.0005 5 6 1.9224 3.6051 0.0011 6 6 3.3039 3.6837 0.0005 7 6 4.0655 2.5324 -0.0011 8 6 3.4420 1.2867 0.0038 9 6 4.2554 0.0467 0.0084 10 6 5.0440 -0.2601 1.0708 11 8 5.7914 -1.3662 1.1155 12 6 5.8322 -2.2722 0.1187 13 6 6.6298 -3.4039 0.2252 14 6 6.6596 -4.3257 -0.8091 15 8 7.4396 -5.4299 -0.7030 16 6 8.2431 -5.5102 0.3765 17 1 8.1865 -4.7575 1.1490 18 6 9.1424 -6.5594 0.4951 19 7 9.2110 -7.4762 -0.4454 20 14 10.2553 -6.6711 1.9912 21 1 9.5789 -7.4579 3.0537 22 1 11.5266 -7.3393 1.6138 23 1 10.5451 -5.3047 2.4958 24 6 5.8943 -4.1278 -1.9581 25 6 5.1051 -3.0203 -2.0779 26 6 5.0649 -2.0829 -1.0441 27 6 4.2190 -0.8792 -1.1365 28 8 3.5266 -0.6583 -2.1153 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2153 2.3191 0.0005 33 1 1.3326 4.5099 0.0011 34 1 3.7880 4.6491 0.0005 35 1 5.1435 2.5974 -0.0019 36 1 5.0676 0.4167 1.9122 37 1 7.2253 -3.5652 1.1117 38 1 9.8397 -8.2102 -0.3623 39 1 5.9261 -4.8541 -2.7568 40 1 4.5140 -2.8698 -2.9691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002237021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:54 Heat of formation + Delta-G solvation = -55.776294 kcal Electronic energy + Delta-G solvation = -27816.121448 eV Core-core repulsion = 23721.402005 eV Total energy + Delta-G solvation = -4094.719442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.23186 -40.11417 -38.88260 -37.94385 -37.39779 -36.02363 -33.40177 -32.57494 -30.56182 -30.25879 -29.86066 -28.78505 -27.28281 -25.86587 -24.31970 -23.28889 -22.33708 -22.00009 -21.33190 -19.11619 -18.34535 -18.06355 -17.61545 -16.99093 -16.20854 -16.13422 -15.73289 -15.68291 -15.40312 -15.07049 -14.59708 -14.53935 -14.35296 -13.86573 -13.77862 -13.58279 -13.36552 -13.35869 -12.92067 -12.80664 -12.55865 -12.19493 -11.88665 -11.78616 -11.73551 -11.38162 -11.20317 -11.06758 -10.94196 -10.81782 -10.59010 -9.73974 -9.48635 -9.14932 -9.05437 -8.83635 -8.24207 -7.81014 -7.57721 -6.73336 -4.30367 0.98569 1.27260 1.36934 1.58764 2.18413 2.79224 2.99373 3.01540 3.06994 3.23680 3.44130 3.65267 3.76615 4.40647 4.41524 4.61488 4.72339 4.82155 4.86659 4.93628 4.95505 5.03942 5.10153 5.14870 5.28064 5.37524 5.41616 5.51746 5.61569 5.77580 5.84842 5.92917 6.13870 6.17278 6.28116 6.31054 6.40241 6.44138 6.60288 6.66414 6.83174 7.01632 7.13450 7.28867 7.36258 7.71062 7.78754 8.21942 8.70636 9.33072 10.42405 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.021671 B = 0.002621 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.715642 B =10680.397190 C =11227.173155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.153 3.847 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.160 4.160 7 C -0.072 4.072 8 C -0.047 4.047 9 C -0.248 4.248 10 C 0.129 3.871 11 O -0.226 6.226 12 C 0.190 3.810 13 C -0.268 4.268 14 C 0.196 3.804 15 O -0.150 6.150 16 C -0.396 4.396 17 H 0.101 0.899 18 C 0.044 3.956 19 N -0.846 5.846 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.202 4.202 25 C 0.003 3.997 26 C -0.310 4.310 27 C 0.440 3.560 28 O -0.485 6.485 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.190 0.810 37 H 0.146 0.854 38 H 0.276 0.724 39 H 0.129 0.871 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 17.185 4.550 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.213 6.213 3 C 0.107 3.893 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.178 4.178 7 C -0.090 4.090 8 C -0.047 4.047 9 C -0.250 4.250 10 C 0.064 3.936 11 O -0.130 6.130 12 C 0.146 3.854 13 C -0.288 4.288 14 C 0.138 3.862 15 O -0.050 6.050 16 C -0.471 4.471 17 H 0.118 0.882 18 C -0.163 4.163 19 N -0.478 5.478 20 Si 0.770 3.230 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.188 1.188 24 C -0.221 4.221 25 C -0.015 4.015 26 C -0.313 4.313 27 C 0.326 3.674 28 O -0.367 6.367 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.207 0.793 37 H 0.163 0.837 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.310 16.563 4.037 20.459 hybrid contribution 0.130 0.200 0.694 0.734 sum -11.180 16.764 4.730 20.698 Atomic orbital electron populations 1.23053 0.78783 1.03997 1.00926 1.86199 1.20878 1.26441 1.87783 1.19049 0.91439 0.84397 0.94450 1.21146 0.99928 0.92254 1.09814 1.20934 0.94690 0.96758 0.97614 1.20937 0.93815 0.98182 1.04908 1.21116 0.99927 0.90527 0.97463 1.17499 0.89104 0.91832 1.06303 1.21017 1.05589 0.99648 0.98763 1.23706 0.87664 0.84943 0.97336 1.82835 1.58594 1.28745 1.42859 1.18942 0.94219 0.87549 0.84725 1.20248 1.09076 0.95670 1.03763 1.19120 0.89761 0.85539 0.91791 1.83961 1.45234 1.32458 1.43309 1.21550 1.15695 1.11991 0.97832 0.88173 1.25436 0.97077 0.94629 0.99153 1.70018 1.34322 1.11257 1.32216 0.85618 0.78742 0.79346 0.79296 1.19505 1.19957 1.18761 1.20058 1.02998 1.00799 0.98251 1.20266 0.94154 0.90765 0.96351 1.20011 1.10186 1.02546 0.98524 1.19517 0.79375 0.83375 0.85098 1.90606 1.38212 1.75123 1.32786 0.92727 0.92891 0.88288 0.85496 0.85965 0.85815 0.85245 0.79344 0.83687 0.91376 0.85276 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.47 9.77 -19.36 -0.19 -4.66 16 3 C 0.15 2.16 6.61 -38.88 -0.26 1.90 16 4 C -0.21 -2.38 9.03 -39.48 -0.36 -2.73 16 5 C -0.08 -0.80 10.03 -39.54 -0.40 -1.20 16 6 C -0.16 -1.59 10.03 -39.61 -0.40 -1.99 16 7 C -0.07 -0.85 9.73 -39.26 -0.38 -1.23 16 8 C -0.05 -0.67 5.12 -104.77 -0.54 -1.21 16 9 C -0.25 -3.98 5.05 -102.95 -0.52 -4.50 16 10 C 0.13 1.79 10.96 29.87 0.33 2.12 16 11 O -0.23 -3.76 9.66 6.35 0.06 -3.70 16 12 C 0.19 3.71 6.77 -38.46 -0.26 3.45 16 13 C -0.27 -5.66 9.11 -39.22 -0.36 -6.02 16 14 C 0.20 4.48 6.65 -39.00 -0.26 4.22 16 15 O -0.15 -3.97 9.74 0.53 0.01 -3.96 16 16 C -0.40 -10.24 9.48 30.90 0.29 -9.95 16 17 H 0.10 2.38 5.17 -52.49 -0.27 2.11 16 18 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 19 N -0.85 -23.11 13.67 55.48 0.76 -22.36 16 20 Si 0.95 19.02 29.55 -169.99 -5.02 13.99 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.20 -4.14 9.92 -39.75 -0.39 -4.54 16 25 C 0.00 0.06 9.61 -39.69 -0.38 -0.32 16 26 C -0.31 -6.18 5.89 -104.76 -0.62 -6.79 16 27 C 0.44 8.59 6.94 -32.17 -0.22 8.37 16 28 O -0.48 -10.44 16.99 5.00 0.08 -10.35 16 29 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 30 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.19 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.15 3.00 5.59 -52.48 -0.29 2.71 16 38 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.13 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.13 2.34 7.79 -52.49 -0.41 1.93 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -32.12 353.87 -6.56 -38.69 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.77 Total: 5.13 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.82 Total: -18.12 kcal Atomic # 7 Polarization: -23.11 SS G_CDS: 0.76 Total: -22.36 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.04 Total: -22.67 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.12 -6.56 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002237021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.089 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds