Wall clock time and date at job start Tue Mar 31 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35880 * 116.99781 * 2 1 4 4 C 1.38529 * 120.12239 * 0.02562 * 3 2 1 5 5 C 1.38220 * 120.06893 * 179.97438 * 4 3 2 6 6 C 1.38369 * 120.30661 * 0.02562 * 5 4 3 7 7 C 1.38037 * 120.22856 * 0.02562 * 6 5 4 8 8 C 1.39303 * 119.92818 * 359.71966 * 7 6 5 9 9 C 1.48300 * 120.14805 * 180.28204 * 8 7 6 10 10 C 1.35822 * 120.64561 * 65.27354 * 9 8 7 11 11 O 1.33567 * 122.55069 * 179.97438 * 10 9 8 12 12 C 1.34767 * 123.29587 * 0.02785 * 11 10 9 13 13 C 1.38861 * 120.56797 * 180.02562 * 12 11 10 14 14 C 1.38580 * 119.81511 * 179.97438 * 13 12 11 15 15 O 1.35610 * 119.70951 * 179.97438 * 14 13 12 16 16 C 1.34812 * 116.99804 * 354.42979 * 15 14 13 17 17 H 1.08000 * 120.00417 * 5.05598 * 16 15 14 18 18 C 1.38697 * 119.99501 * 185.05641 * 16 15 14 19 19 N 1.31519 * 120.00038 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99902 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47416 * 89.99516 * 20 18 16 22 22 H 1.48498 * 109.47540 * 209.99960 * 20 18 16 23 23 H 1.48509 * 109.47134 * 329.99807 * 20 18 16 24 24 C 1.39464 * 120.57910 * 359.97438 * 14 13 12 25 25 C 1.36519 * 120.30702 * 0.02562 * 24 14 13 26 26 C 1.39612 * 119.76143 * 359.97438 * 25 24 14 27 27 C 1.47289 * 120.63912 * 244.99053 * 9 8 7 28 28 O 1.21909 * 121.61586 * 0.02562 * 27 9 8 29 29 H 1.09000 * 109.46920 * 59.99496 * 1 2 3 30 30 H 1.08993 * 109.47102 * 299.99740 * 1 2 3 31 31 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.96226 * 359.97298 * 4 3 2 33 33 H 1.08008 * 119.84917 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.88723 * 179.97438 * 6 5 4 35 35 H 1.08002 * 120.03152 * 179.97438 * 7 6 5 36 36 H 1.08001 * 118.72097 * 359.97438 * 10 9 8 37 37 H 1.08007 * 120.09051 * 359.97438 * 13 12 11 38 38 H 0.97005 * 120.00066 * 180.02562 * 19 18 16 39 39 H 1.08001 * 119.85064 * 180.02562 * 24 14 13 40 40 H 1.07992 * 120.12391 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2938 2.3741 0.0005 5 6 1.9224 3.6051 0.0011 6 6 3.3039 3.6837 0.0005 7 6 4.0655 2.5324 -0.0011 8 6 3.4420 1.2867 0.0038 9 6 4.2554 0.0467 0.0084 10 6 5.0440 -0.2601 1.0708 11 8 5.7914 -1.3662 1.1155 12 6 5.8322 -2.2722 0.1187 13 6 6.6298 -3.4039 0.2252 14 6 6.6596 -4.3257 -0.8091 15 8 7.4396 -5.4299 -0.7030 16 6 8.2431 -5.5102 0.3765 17 1 8.1865 -4.7575 1.1490 18 6 9.1424 -6.5594 0.4951 19 7 9.2110 -7.4762 -0.4454 20 14 10.2553 -6.6711 1.9912 21 1 9.5789 -7.4579 3.0537 22 1 11.5266 -7.3393 1.6138 23 1 10.5451 -5.3047 2.4958 24 6 5.8943 -4.1278 -1.9581 25 6 5.1051 -3.0203 -2.0779 26 6 5.0649 -2.0829 -1.0441 27 6 4.2190 -0.8792 -1.1365 28 8 3.5266 -0.6583 -2.1153 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2153 2.3191 0.0005 33 1 1.3326 4.5099 0.0011 34 1 3.7880 4.6491 0.0005 35 1 5.1435 2.5974 -0.0019 36 1 5.0676 0.4167 1.9122 37 1 7.2253 -3.5652 1.1117 38 1 9.8397 -8.2102 -0.3623 39 1 5.9261 -4.8541 -2.7568 40 1 4.5140 -2.8698 -2.9691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002237021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:51 Heat of formation + Delta-G solvation = -74.395439 kcal Electronic energy + Delta-G solvation = -27816.928834 eV Core-core repulsion = 23721.402005 eV Total energy + Delta-G solvation = -4095.526829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -42.66760 -41.06315 -40.58574 -39.45891 -38.31337 -37.67655 -34.55156 -34.42146 -32.03692 -31.44810 -31.04152 -30.04995 -28.09365 -27.69345 -25.65159 -24.81353 -23.61016 -22.89687 -22.69777 -20.71033 -19.80545 -19.44849 -18.86358 -18.35412 -17.69087 -17.33994 -16.90668 -16.73131 -16.58784 -16.42943 -16.15475 -15.88390 -15.66717 -15.40748 -15.05409 -14.99680 -14.69634 -14.53460 -14.41825 -14.16657 -13.62185 -13.55938 -13.37649 -13.01950 -12.91429 -12.58842 -12.49864 -12.45249 -12.12191 -12.00108 -11.83821 -11.52677 -10.91158 -10.79830 -10.55425 -9.87016 -9.44976 -9.31414 -8.96633 -8.58767 -6.27091 -0.28536 -0.09463 0.33394 0.51688 0.65948 1.37373 1.42124 1.44889 1.55635 1.92000 2.12801 2.42422 2.71859 2.78647 3.02015 3.11669 3.22721 3.48085 3.68954 3.91236 3.96505 4.09556 4.12940 4.20323 4.27519 4.35022 4.42730 4.49330 4.54409 4.64589 4.67008 4.71319 4.74034 4.81008 4.94079 5.05301 5.09178 5.35757 5.39057 5.41969 5.46844 5.58884 5.65255 5.87521 5.89264 6.31519 6.50406 6.69417 6.84255 7.51812 8.61872 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.021671 B = 0.002621 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.715642 B =10680.397190 C =11227.173155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.127 3.873 4 C -0.217 4.217 5 C -0.077 4.077 6 C -0.158 4.158 7 C -0.075 4.075 8 C -0.078 4.078 9 C -0.257 4.257 10 C 0.146 3.854 11 O -0.222 6.222 12 C 0.196 3.804 13 C -0.269 4.269 14 C 0.180 3.820 15 O -0.196 6.196 16 C -0.422 4.422 17 H 0.113 0.887 18 C -0.011 4.011 19 N -0.905 5.905 20 Si 1.020 2.980 21 H -0.261 1.261 22 H -0.271 1.271 23 H -0.249 1.249 24 C -0.207 4.207 25 C 0.007 3.993 26 C -0.315 4.315 27 C 0.432 3.568 28 O -0.511 6.511 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.244 0.756 37 H 0.148 0.852 38 H 0.279 0.721 39 H 0.138 0.862 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 20.967 6.500 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.081 3.919 4 C -0.235 4.235 5 C -0.095 4.095 6 C -0.176 4.176 7 C -0.093 4.093 8 C -0.079 4.079 9 C -0.260 4.260 10 C 0.081 3.919 11 O -0.125 6.125 12 C 0.151 3.849 13 C -0.289 4.289 14 C 0.125 3.875 15 O -0.098 6.098 16 C -0.496 4.496 17 H 0.130 0.870 18 C -0.212 4.212 19 N -0.540 5.540 20 Si 0.838 3.162 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.172 1.172 24 C -0.226 4.226 25 C -0.011 4.011 26 C -0.317 4.317 27 C 0.320 3.680 28 O -0.396 6.396 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.260 0.740 37 H 0.166 0.834 38 H 0.088 0.912 39 H 0.156 0.844 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.250 20.398 5.990 24.536 hybrid contribution 0.099 -0.614 0.002 0.621 sum -12.151 19.784 5.993 23.979 Atomic orbital electron populations 1.23274 0.76923 1.04906 1.02276 1.86128 1.23090 1.27618 1.88226 1.19371 0.91805 0.85017 0.95663 1.21445 1.00971 0.91923 1.09206 1.21393 0.95107 0.97382 0.95582 1.21336 0.94038 0.98857 1.03356 1.21360 1.00920 0.90108 0.96948 1.17636 0.89354 0.91848 1.09082 1.20980 1.06932 1.00196 0.97858 1.24613 0.85533 0.83692 0.98026 1.82884 1.59057 1.29115 1.41481 1.18808 0.93269 0.87695 0.85113 1.20296 1.09277 0.95935 1.03409 1.19534 0.89545 0.85528 0.92935 1.83957 1.47114 1.34350 1.44423 1.22030 1.16397 1.12906 0.98312 0.86973 1.26674 0.98296 0.93869 1.02312 1.70145 1.36211 1.12625 1.34970 0.84564 0.76416 0.79985 0.75201 1.18620 1.19533 1.17219 1.20222 1.02866 1.01417 0.98059 1.20480 0.93588 0.90120 0.96907 1.20428 1.09799 1.02919 0.98563 1.19924 0.78508 0.83599 0.85959 1.90583 1.39190 1.75734 1.34091 0.92084 0.90719 0.87755 0.83577 0.82714 0.82837 0.83800 0.74003 0.83420 0.91193 0.84429 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -9.78 9.77 -92.20 -0.90 -10.68 16 3 C 0.13 3.38 6.61 22.72 0.15 3.53 16 4 C -0.22 -4.23 9.03 22.33 0.20 -4.03 16 5 C -0.08 -1.18 10.03 22.30 0.22 -0.96 16 6 C -0.16 -2.49 10.03 22.25 0.22 -2.27 16 7 C -0.08 -1.53 9.73 22.48 0.22 -1.31 16 8 C -0.08 -2.10 5.12 -19.96 -0.10 -2.20 16 9 C -0.26 -7.84 5.05 -18.78 -0.09 -7.93 16 10 C 0.15 3.62 10.96 67.26 0.74 4.36 16 11 O -0.22 -6.91 9.66 -0.20 0.00 -6.91 16 12 C 0.20 7.53 6.77 23.00 0.16 7.69 16 13 C -0.27 -11.52 9.11 22.50 0.20 -11.31 16 14 C 0.18 8.52 6.65 22.65 0.15 8.67 16 15 O -0.20 -10.91 9.74 -21.02 -0.20 -11.11 16 16 C -0.42 -22.66 9.48 67.93 0.64 -22.02 16 17 H 0.11 5.46 5.17 -2.91 -0.02 5.44 16 18 C -0.01 -0.57 5.49 84.85 0.47 -0.11 16 19 N -0.90 -51.80 13.67 21.62 0.30 -51.51 16 20 Si 1.02 39.46 29.55 68.60 2.03 41.49 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 24 C -0.21 -8.73 9.92 22.16 0.22 -8.51 16 25 C 0.01 0.29 9.61 22.20 0.21 0.50 16 26 C -0.31 -12.45 5.89 -19.96 -0.12 -12.57 16 27 C 0.43 16.65 6.94 27.07 0.19 16.84 16 28 O -0.51 -22.07 16.99 -5.02 -0.09 -22.16 16 29 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 30 H 0.07 1.00 7.66 -2.39 -0.02 0.99 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.15 2.13 6.30 -2.91 -0.02 2.11 16 33 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 34 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.24 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.15 6.17 5.59 -2.91 -0.02 6.15 16 38 H 0.28 14.57 8.31 -92.70 -0.77 13.80 16 39 H 0.14 5.46 8.06 -2.91 -0.02 5.44 16 40 H 0.15 5.24 7.79 -2.91 -0.02 5.22 16 Total: -1.00 -74.35 353.87 7.03 -67.32 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 1.10 Total: 23.70 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 4.80 Total: -30.15 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.30 Total: -51.51 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -1.19 Total: -50.86 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -74.35 7.03 -67.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002237021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.071 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds