Wall clock time and date at job start Tue Mar 31 2020 05:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.38636 * 120.00182 * 276.86130 * 3 2 1 5 5 C 1.40675 * 119.99607 * 0.02562 * 4 3 2 6 6 C 1.37562 * 125.49286 * 179.97438 * 5 4 3 7 7 C 1.37121 * 113.18209 * 179.97438 * 6 5 4 8 8 C 1.34104 * 115.17302 * 359.97438 * 7 6 5 9 9 S 1.70607 * 111.04687 * 359.76422 * 8 7 6 10 10 C 1.46773 * 119.99771 * 96.86609 * 3 2 1 11 11 O 1.21711 * 119.99620 * 171.77976 * 10 3 2 12 12 N 1.34775 * 120.00172 * 351.77846 * 10 3 2 13 13 C 1.46500 * 119.99736 * 3.18163 * 12 10 3 14 14 C 1.50696 * 109.47406 * 81.41762 * 13 12 10 15 15 H 1.07994 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99751 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00187 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99661 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47398 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46922 * 120.00300 * 18 16 14 21 21 H 1.48496 * 109.47036 * 239.99929 * 18 16 14 22 22 C 1.39842 * 119.99646 * 183.17611 * 12 10 3 23 23 C 1.38898 * 120.06707 * 187.68819 * 22 12 10 24 24 C 1.38111 * 119.92133 * 179.72393 * 23 22 12 25 25 C 1.38279 * 120.07425 * 0.55421 * 24 23 22 26 26 C 1.38289 * 120.14506 * 359.71961 * 25 24 23 27 27 C 1.38104 * 120.07248 * 0.02562 * 26 25 24 28 28 H 1.08000 * 120.00354 * 180.02562 * 4 3 2 29 29 H 1.08002 * 123.41252 * 359.97438 * 6 5 4 30 30 H 1.08000 * 122.41011 * 180.02562 * 7 6 5 31 31 H 1.07997 * 124.47909 * 180.02562 * 8 7 6 32 32 H 1.09004 * 109.46635 * 201.41376 * 13 12 10 33 33 H 1.08993 * 109.46899 * 321.40703 * 13 12 10 34 34 H 0.97001 * 119.99645 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.03719 * 359.97304 * 23 22 12 36 36 H 1.07997 * 119.96179 * 180.27099 * 24 23 22 37 37 H 1.07999 * 119.93016 * 179.70496 * 25 24 23 38 38 H 1.08007 * 119.96371 * 180.02562 * 26 25 24 39 39 H 1.08003 * 120.03429 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2613 -0.1425 1.1920 5 6 2.5579 -0.2889 2.4015 6 6 3.1285 -0.4387 3.6441 7 6 2.2055 -0.5602 4.6509 8 6 0.9240 -0.5124 4.2586 9 16 0.8077 -0.3015 2.5696 10 6 3.3017 0.1529 -1.2620 11 8 4.5094 0.3037 -1.2493 12 7 2.6382 0.1257 -2.4348 13 6 1.1776 0.0142 -2.4476 14 6 0.5680 1.3721 -2.2118 15 1 1.2049 2.2320 -2.0666 16 6 -0.8029 1.5164 -2.1816 17 7 -1.5784 0.4692 -2.3590 18 14 -1.5585 3.1995 -1.8886 19 1 -0.4784 4.2046 -1.7203 20 1 -2.4036 3.5718 -3.0515 21 1 -2.3943 3.1601 -0.6618 22 6 3.3442 0.2041 -3.6394 23 6 2.6589 0.3371 -4.8402 24 6 3.3593 0.4200 -6.0277 25 6 4.7408 0.3591 -6.0230 26 6 5.4258 0.2210 -4.8297 27 6 4.7317 0.1429 -3.6383 28 1 4.3413 -0.1416 1.1921 29 1 4.1956 -0.4587 3.8101 30 1 2.4902 -0.6845 5.6853 31 1 0.0775 -0.5922 4.9245 32 1 0.8508 -0.3677 -3.4148 33 1 0.8585 -0.6690 -1.6606 34 1 -2.5429 0.5708 -2.3373 35 1 1.5798 0.3798 -4.8450 36 1 2.8273 0.5278 -6.9613 37 1 5.2860 0.4194 -6.9533 38 1 6.5049 0.1742 -4.8294 39 1 5.2673 0.0346 -2.7067 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002360652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:37 Heat of formation + Delta-G solvation = 120.533022 kcal Electronic energy + Delta-G solvation = -26056.453513 eV Core-core repulsion = 22444.425038 eV Total energy + Delta-G solvation = -3612.028474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.083 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.43584 -38.22850 -37.75490 -36.72920 -35.12633 -33.37884 -32.58585 -30.38491 -30.01650 -28.58725 -27.23158 -25.22683 -23.52616 -22.96818 -21.82424 -21.67946 -20.36429 -19.03542 -18.16017 -16.85315 -16.67778 -16.42733 -15.89273 -15.46239 -14.79754 -14.73573 -14.65663 -14.18636 -13.70068 -13.49659 -13.34892 -13.11396 -12.90327 -12.80665 -12.62407 -12.54959 -12.39554 -12.21208 -12.12279 -11.68501 -11.50440 -11.06050 -10.99791 -10.68715 -10.59767 -10.30359 -10.19386 -10.11086 -9.70498 -9.19841 -8.85105 -8.57434 -8.50251 -8.37753 -7.94744 -7.20115 -6.21947 -4.29188 0.04084 1.64740 1.67214 1.96267 1.98639 2.11525 2.82167 3.19425 3.26328 3.29291 3.34341 3.46073 3.66179 4.23807 4.31755 4.46358 4.59350 4.80925 5.02727 5.15471 5.26165 5.29028 5.42922 5.46447 5.55499 5.67016 5.79198 5.98472 6.02214 6.08247 6.12285 6.16495 6.29725 6.44520 6.47371 6.70348 6.84838 6.95767 7.03342 7.11258 7.23015 7.67987 7.75518 7.89976 7.99325 8.33404 8.58466 8.75796 9.38234 10.84347 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.004951 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.400764 B = 5654.355228 C = 7907.564823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C 0.213 3.787 3 C -0.096 4.096 4 C 0.060 3.940 5 C -0.223 4.223 6 C -0.090 4.090 7 C -0.154 4.154 8 C -0.270 4.270 9 S 0.261 5.739 10 C 0.573 3.427 11 O -0.539 6.539 12 N -0.525 5.525 13 C 0.206 3.794 14 C -0.557 4.557 15 H 0.061 0.939 16 C 0.088 3.912 17 N -0.865 5.865 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.280 1.280 22 C 0.169 3.831 23 C -0.145 4.145 24 C -0.104 4.104 25 C -0.160 4.160 26 C -0.108 4.108 27 C -0.173 4.173 28 H 0.163 0.837 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.159 0.841 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.265 0.735 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 -3.558 7.277 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N 0.012 4.988 2 C -0.100 4.100 3 C -0.106 4.106 4 C 0.035 3.965 5 C -0.341 4.341 6 C -0.123 4.123 7 C -0.184 4.184 8 C -0.409 4.409 9 S 0.534 5.466 10 C 0.365 3.635 11 O -0.421 6.421 12 N -0.242 5.242 13 C 0.087 3.913 14 C -0.595 4.595 15 H 0.080 0.920 16 C -0.119 4.119 17 N -0.500 5.500 18 Si 0.715 3.285 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.206 1.206 22 C 0.073 3.927 23 C -0.166 4.166 24 C -0.123 4.123 25 C -0.179 4.179 26 C -0.127 4.127 27 C -0.192 4.192 28 H 0.181 0.819 29 H 0.166 0.834 30 H 0.152 0.848 31 H 0.177 0.823 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.223 -3.435 6.365 9.541 hybrid contribution 0.810 0.973 0.947 1.582 sum 7.033 -2.461 7.312 10.440 Atomic orbital electron populations 1.81343 1.10552 1.04035 1.02918 1.24593 0.92475 0.97146 0.95798 1.18341 0.86137 1.11816 0.94278 1.21080 1.00264 0.87861 0.87295 1.22607 0.97949 1.16062 0.97434 1.20931 1.00930 1.00131 0.90305 1.19888 0.91791 1.06021 1.00691 1.26027 1.01731 1.08508 1.04656 1.84990 1.01284 1.63000 0.97359 1.17591 0.86054 0.76669 0.83225 1.90446 1.13722 1.51520 1.86447 1.45879 1.10547 1.64658 1.03128 1.20428 0.71217 0.99126 1.00504 1.21260 0.91773 0.93282 1.53182 0.92048 1.24707 0.96618 0.96655 0.93916 1.69884 1.04613 1.28943 1.46576 0.86577 0.79473 0.84308 0.78105 1.19666 1.20744 1.20572 1.18053 0.91319 0.97708 0.85630 1.21126 1.01105 1.03328 0.91006 1.20857 0.94069 1.00131 0.97238 1.20992 0.94406 1.04817 0.97708 1.21018 0.99231 1.00102 0.92339 1.22546 0.92973 1.02439 1.01284 0.81944 0.83378 0.84753 0.82302 0.93327 0.92520 0.92487 0.84562 0.86477 0.87087 0.86642 0.80803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.31 -7.01 13.08 41.83 0.55 -6.46 16 2 C 0.21 4.39 6.84 -22.47 -0.15 4.23 16 3 C -0.10 -1.75 5.89 -104.37 -0.62 -2.37 16 4 C 0.06 0.86 9.50 -38.52 -0.37 0.50 16 5 C -0.22 -3.03 6.16 -38.91 -0.24 -3.26 16 6 C -0.09 -0.99 10.26 -40.23 -0.41 -1.40 16 7 C -0.15 -1.65 10.14 -41.44 -0.42 -2.07 16 8 C -0.27 -3.21 10.93 29.28 0.32 -2.89 16 9 S 0.26 3.90 18.17 -107.50 -1.95 1.94 16 10 C 0.57 11.47 7.45 -12.81 -0.10 11.37 16 11 O -0.54 -10.57 12.79 5.18 0.07 -10.51 16 12 N -0.53 -11.32 2.71 -116.16 -0.31 -11.64 16 13 C 0.21 4.91 4.23 -5.20 -0.02 4.89 16 14 C -0.56 -14.39 6.92 -34.44 -0.24 -14.62 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.09 2.30 4.18 -17.82 -0.07 2.22 16 17 N -0.86 -23.40 12.73 55.43 0.71 -22.69 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.17 3.45 6.49 -83.72 -0.54 2.91 16 23 C -0.15 -2.83 9.16 -39.38 -0.36 -3.19 16 24 C -0.10 -1.72 10.04 -39.61 -0.40 -2.12 16 25 C -0.16 -2.43 10.04 -39.55 -0.40 -2.83 16 26 C -0.11 -1.72 10.04 -39.61 -0.40 -2.12 16 27 C -0.17 -3.21 8.99 -39.39 -0.35 -3.57 16 28 H 0.16 1.90 7.62 -52.49 -0.40 1.50 16 29 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.05 1.22 6.08 -51.93 -0.32 0.90 16 33 H 0.06 1.40 4.29 -52.00 -0.22 1.17 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.14 2.84 6.19 -52.49 -0.32 2.51 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.18 3.29 4.66 -55.54 -0.26 3.03 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -29.03 340.90 -9.21 -38.24 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.60 Total: 4.19 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -4.77 Total: -14.32 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.94 Total: -40.79 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.95 Total: 1.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.03 -9.21 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002360652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.773 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds