Wall clock time and date at job start Tue Mar 31 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35916 * 117.00264 * 2 1 4 4 C 1.38804 * 119.93543 * 180.02562 * 3 2 1 5 5 C 1.37930 * 120.06993 * 180.02562 * 4 3 2 6 6 C 1.39387 * 119.93121 * 359.97438 * 5 4 3 7 7 C 1.48334 * 120.07050 * 179.97438 * 6 5 4 8 8 C 1.35807 * 120.63749 * 309.99806 * 7 6 5 9 9 O 1.33568 * 122.54974 * 179.69428 * 8 7 6 10 10 C 1.34767 * 123.29454 * 0.28912 * 9 8 7 11 11 C 1.38856 * 120.56400 * 180.02562 * 10 9 8 12 12 C 1.38587 * 119.80902 * 179.97438 * 11 10 9 13 13 O 1.35608 * 119.70589 * 180.02562 * 12 11 10 14 14 C 1.34814 * 117.00570 * 354.42323 * 13 12 11 15 15 H 1.08000 * 119.99315 * 5.05983 * 14 13 12 16 16 C 1.38694 * 120.00503 * 185.06112 * 14 13 12 17 17 N 1.31524 * 119.99570 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00171 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47216 * 59.99623 * 18 16 14 20 20 H 1.48503 * 109.47434 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47301 * 299.99906 * 18 16 14 22 22 C 1.39465 * 120.58128 * 359.97438 * 12 11 10 23 23 C 1.36521 * 120.30254 * 359.97438 * 22 12 11 24 24 C 1.39601 * 119.76428 * 0.02562 * 23 22 12 25 25 C 1.47276 * 120.64211 * 130.25535 * 7 6 5 26 26 O 1.21907 * 121.61911 * 0.02562 * 25 7 6 27 27 C 1.39390 * 119.86183 * 0.25108 * 6 5 4 28 28 C 1.37935 * 119.92871 * 359.49632 * 27 6 5 29 29 H 1.08995 * 109.46976 * 60.00314 * 1 2 3 30 30 H 1.08998 * 109.46615 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46721 * 300.00372 * 1 2 3 32 32 H 1.07996 * 119.96005 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.03468 * 180.02562 * 5 4 3 34 34 H 1.08000 * 118.72844 * 359.97438 * 8 7 6 35 35 H 1.07999 * 120.09862 * 359.97438 * 11 10 9 36 36 H 0.97002 * 119.99818 * 179.97438 * 17 16 14 37 37 H 1.08003 * 119.84937 * 180.02562 * 22 12 11 38 38 H 1.07999 * 120.11765 * 180.02562 * 23 22 12 39 39 H 1.07998 * 120.03679 * 179.72136 * 27 6 5 40 40 H 1.07997 * 119.96749 * 180.25101 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4323 1.2820 -0.0005 5 6 4.0615 2.5095 0.0000 6 6 3.3037 3.6794 0.0005 7 6 3.9771 5.0011 0.0017 8 6 4.9601 5.2761 0.8974 9 8 5.5958 6.4505 0.9287 10 6 5.3187 7.4644 0.0852 11 6 6.0161 8.6623 0.1679 12 6 5.7187 9.6944 -0.7078 13 8 6.4014 10.8632 -0.6255 14 6 7.2690 10.9947 0.3980 15 1 7.4556 10.1605 1.0581 16 6 7.9218 12.2010 0.6033 17 7 7.6948 13.2167 -0.2009 18 14 9.1244 12.3828 2.0210 19 1 10.2270 11.4003 1.8639 20 1 9.6842 13.7582 2.0221 21 1 8.4188 12.1339 3.3038 22 6 4.7243 9.5412 -1.6736 23 6 4.0306 8.3692 -1.7682 24 6 4.3191 7.3206 -0.8930 25 6 3.5886 6.0423 -0.9648 26 8 2.7097 5.8539 -1.7884 27 6 1.9118 3.6047 0.0058 28 6 1.2886 2.3742 0.0000 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0188 0.3752 -0.0014 33 1 5.1401 2.5641 -0.0008 34 1 5.2420 4.5143 1.6091 35 1 6.7879 8.7893 0.9125 36 1 8.1511 14.0605 -0.0572 37 1 4.5026 10.3532 -2.3503 38 1 3.2615 8.2537 -2.5175 39 1 1.3219 4.5094 0.0108 40 1 0.2102 2.3157 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002418594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:58 Heat of formation + Delta-G solvation = -59.503482 kcal Electronic energy + Delta-G solvation = -27103.769260 eV Core-core repulsion = 23008.888194 eV Total energy + Delta-G solvation = -4094.881065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.30475 -40.19618 -38.96139 -38.29903 -37.44529 -36.04452 -33.02230 -32.62599 -31.26088 -30.42635 -29.82736 -28.67486 -27.34459 -25.92483 -24.19881 -23.44859 -22.52641 -22.11512 -21.26506 -19.13219 -18.39670 -18.13028 -17.86781 -17.08879 -16.34629 -16.09982 -15.95031 -15.78754 -15.38704 -15.06246 -14.62133 -14.52336 -14.27635 -13.92808 -13.86983 -13.69893 -13.44598 -13.36519 -13.06241 -12.90581 -12.69662 -12.33227 -12.09262 -11.91710 -11.69136 -11.46337 -11.31726 -11.03406 -10.94407 -10.89741 -10.64191 -9.79273 -9.45041 -9.26039 -9.11652 -9.10330 -8.33858 -7.74165 -7.63683 -6.77816 -4.34731 0.86198 1.23970 1.29473 1.60882 2.13052 2.71299 2.97690 2.98588 3.02832 3.05050 3.32794 3.66875 3.73123 4.31631 4.37178 4.62168 4.66606 4.72124 4.78099 4.85676 4.86930 4.89976 5.03041 5.15648 5.22632 5.28779 5.30982 5.53517 5.58251 5.70182 5.85461 5.91159 6.03892 6.08788 6.19894 6.30467 6.37721 6.51662 6.54701 6.59105 6.77721 6.95123 7.08249 7.19003 7.23369 7.66071 7.71486 8.07916 8.65703 9.27392 10.37539 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.002201 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.000353 B =12720.450071 C =13473.600731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.151 4.151 5 C -0.077 4.077 6 C -0.047 4.047 7 C -0.258 4.258 8 C 0.132 3.868 9 O -0.225 6.225 10 C 0.190 3.810 11 C -0.268 4.268 12 C 0.195 3.805 13 O -0.147 6.147 14 C -0.396 4.396 15 H 0.101 0.899 16 C 0.045 3.955 17 N -0.844 5.844 18 Si 0.947 3.053 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.266 1.266 22 C -0.201 4.201 23 C 0.003 3.997 24 C -0.313 4.313 25 C 0.436 3.564 26 O -0.489 6.489 27 C -0.049 4.049 28 C -0.206 4.206 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.192 0.808 35 H 0.146 0.854 36 H 0.277 0.723 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -19.180 3.784 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.170 4.170 5 C -0.095 4.095 6 C -0.048 4.048 7 C -0.261 4.261 8 C 0.066 3.934 9 O -0.129 6.129 10 C 0.146 3.854 11 C -0.288 4.288 12 C 0.137 3.863 13 O -0.047 6.047 14 C -0.471 4.471 15 H 0.118 0.882 16 C -0.163 4.163 17 N -0.476 5.476 18 Si 0.771 3.229 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.191 1.191 22 C -0.220 4.220 23 C -0.015 4.015 24 C -0.316 4.316 25 C 0.323 3.677 26 O -0.372 6.372 27 C -0.067 4.067 28 C -0.224 4.224 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.208 0.792 35 H 0.164 0.836 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.965 -18.900 3.347 20.781 hybrid contribution 0.247 0.146 0.628 0.690 sum -7.719 -18.754 3.975 20.666 Atomic orbital electron populations 1.23044 0.78490 1.03775 1.01483 1.86049 1.21337 1.27127 1.88861 1.19075 0.92368 0.84004 0.96961 1.20274 0.91255 0.98389 1.07040 1.21057 0.99676 0.90649 0.98095 1.18080 0.92751 0.90451 1.03499 1.21187 1.03873 0.97358 1.03637 1.23774 0.89538 0.84502 0.95608 1.82845 1.56728 1.20376 1.52954 1.18940 0.93348 0.85687 0.87441 1.20248 1.08472 0.91613 1.08422 1.19129 0.89367 0.86020 0.91803 1.83957 1.46477 1.29236 1.45024 1.21516 1.19530 0.99661 1.06359 0.88169 1.25453 0.98042 0.94006 0.98810 1.70009 1.39396 1.02630 1.35526 0.85670 0.79390 0.78362 0.79514 1.19060 1.19970 1.19054 1.20068 0.99670 0.99427 1.02834 1.20267 0.96023 0.90212 0.95031 1.19972 1.06706 0.99112 1.05800 1.19587 0.81336 0.85217 0.81610 1.90622 1.29196 1.81619 1.35809 1.21000 0.93702 0.97095 0.94938 1.21158 0.99984 0.92124 1.09170 0.92583 0.88354 0.92650 0.85138 0.85171 0.79183 0.83646 0.91248 0.85224 0.85040 0.85548 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.49 -19.47 -0.20 -3.56 16 3 C 0.12 1.39 6.69 -39.16 -0.26 1.13 16 4 C -0.15 -1.66 9.97 -39.48 -0.39 -2.05 16 5 C -0.08 -0.87 9.46 -39.27 -0.37 -1.24 16 6 C -0.05 -0.64 5.38 -104.89 -0.56 -1.20 16 7 C -0.26 -3.83 5.60 -102.94 -0.58 -4.41 16 8 C 0.13 1.68 10.76 29.86 0.32 2.00 16 9 O -0.23 -3.54 9.66 6.34 0.06 -3.48 16 10 C 0.19 3.55 6.77 -38.46 -0.26 3.29 16 11 C -0.27 -5.48 9.11 -39.22 -0.36 -5.84 16 12 C 0.20 4.35 6.65 -39.00 -0.26 4.09 16 13 O -0.15 -3.83 9.74 0.53 0.01 -3.82 16 14 C -0.40 -10.05 9.48 30.90 0.29 -9.76 16 15 H 0.10 2.32 5.17 -52.49 -0.27 2.05 16 16 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 17 N -0.84 -22.70 13.67 55.48 0.76 -21.94 16 18 Si 0.95 18.70 29.55 -169.99 -5.02 13.67 16 19 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 20 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 22 C -0.20 -3.99 9.92 -39.74 -0.39 -4.39 16 23 C 0.00 0.06 9.61 -39.69 -0.38 -0.32 16 24 C -0.31 -5.94 5.89 -104.77 -0.62 -6.55 16 25 C 0.44 7.95 7.09 -32.18 -0.23 7.72 16 26 O -0.49 -9.82 16.29 5.00 0.08 -9.74 16 27 C -0.05 -0.66 9.02 -39.26 -0.35 -1.01 16 28 C -0.21 -2.37 9.02 -39.48 -0.36 -2.72 16 29 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 34 H 0.19 1.55 7.97 -52.49 -0.42 1.14 16 35 H 0.15 2.92 5.59 -52.49 -0.29 2.62 16 36 H 0.28 6.82 8.31 -40.82 -0.34 6.49 16 37 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 38 H 0.13 2.24 7.80 -52.49 -0.41 1.83 16 39 H 0.13 1.73 7.87 -52.49 -0.41 1.32 16 40 H 0.13 1.17 6.28 -52.49 -0.33 0.84 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -30.61 353.04 -6.62 -37.24 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -3.75 Total: 5.38 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -3.87 Total: -19.06 kcal Atomic # 7 Polarization: -22.70 SS G_CDS: 0.76 Total: -21.94 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.06 Total: -20.61 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.61 -6.62 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002418594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.267 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds