Wall clock time and date at job start Tue Mar 31 2020 05:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35916 * 117.00264 * 2 1 4 4 C 1.38804 * 119.93543 * 180.02562 * 3 2 1 5 5 C 1.37930 * 120.06993 * 180.02562 * 4 3 2 6 6 C 1.39387 * 119.93121 * 359.97438 * 5 4 3 7 7 C 1.48334 * 120.07050 * 179.97438 * 6 5 4 8 8 C 1.35807 * 120.63749 * 309.99806 * 7 6 5 9 9 O 1.33568 * 122.54974 * 179.69428 * 8 7 6 10 10 C 1.34767 * 123.29454 * 0.28912 * 9 8 7 11 11 C 1.38856 * 120.56400 * 180.02562 * 10 9 8 12 12 C 1.38587 * 119.80902 * 179.97438 * 11 10 9 13 13 O 1.35608 * 119.70589 * 180.02562 * 12 11 10 14 14 C 1.34814 * 117.00570 * 354.42323 * 13 12 11 15 15 H 1.08000 * 119.99315 * 5.05983 * 14 13 12 16 16 C 1.38694 * 120.00503 * 185.06112 * 14 13 12 17 17 N 1.31524 * 119.99570 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00171 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47216 * 59.99623 * 18 16 14 20 20 H 1.48503 * 109.47434 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47301 * 299.99906 * 18 16 14 22 22 C 1.39465 * 120.58128 * 359.97438 * 12 11 10 23 23 C 1.36521 * 120.30254 * 359.97438 * 22 12 11 24 24 C 1.39601 * 119.76428 * 0.02562 * 23 22 12 25 25 C 1.47276 * 120.64211 * 130.25535 * 7 6 5 26 26 O 1.21907 * 121.61911 * 0.02562 * 25 7 6 27 27 C 1.39390 * 119.86183 * 0.25108 * 6 5 4 28 28 C 1.37935 * 119.92871 * 359.49632 * 27 6 5 29 29 H 1.08995 * 109.46976 * 60.00314 * 1 2 3 30 30 H 1.08998 * 109.46615 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46721 * 300.00372 * 1 2 3 32 32 H 1.07996 * 119.96005 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.03468 * 180.02562 * 5 4 3 34 34 H 1.08000 * 118.72844 * 359.97438 * 8 7 6 35 35 H 1.07999 * 120.09862 * 359.97438 * 11 10 9 36 36 H 0.97002 * 119.99818 * 179.97438 * 17 16 14 37 37 H 1.08003 * 119.84937 * 180.02562 * 22 12 11 38 38 H 1.07999 * 120.11765 * 180.02562 * 23 22 12 39 39 H 1.07998 * 120.03679 * 179.72136 * 27 6 5 40 40 H 1.07997 * 119.96749 * 180.25101 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4323 1.2820 -0.0005 5 6 4.0615 2.5095 0.0000 6 6 3.3037 3.6794 0.0005 7 6 3.9771 5.0011 0.0017 8 6 4.9601 5.2761 0.8974 9 8 5.5958 6.4505 0.9287 10 6 5.3187 7.4644 0.0852 11 6 6.0161 8.6623 0.1679 12 6 5.7187 9.6944 -0.7078 13 8 6.4014 10.8632 -0.6255 14 6 7.2690 10.9947 0.3980 15 1 7.4556 10.1605 1.0581 16 6 7.9218 12.2010 0.6033 17 7 7.6948 13.2167 -0.2009 18 14 9.1244 12.3828 2.0210 19 1 10.2270 11.4003 1.8639 20 1 9.6842 13.7582 2.0221 21 1 8.4188 12.1339 3.3038 22 6 4.7243 9.5412 -1.6736 23 6 4.0306 8.3692 -1.7682 24 6 4.3191 7.3206 -0.8930 25 6 3.5886 6.0423 -0.9648 26 8 2.7097 5.8539 -1.7884 27 6 1.9118 3.6047 0.0058 28 6 1.2886 2.3742 0.0000 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0188 0.3752 -0.0014 33 1 5.1401 2.5641 -0.0008 34 1 5.2420 4.5143 1.6091 35 1 6.7879 8.7893 0.9125 36 1 8.1511 14.0605 -0.0572 37 1 4.5026 10.3532 -2.3503 38 1 3.2615 8.2537 -2.5175 39 1 1.3219 4.5094 0.0108 40 1 0.2102 2.3157 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002418594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:56 Heat of formation + Delta-G solvation = -76.538522 kcal Electronic energy + Delta-G solvation = -27104.507954 eV Core-core repulsion = 23008.888194 eV Total energy + Delta-G solvation = -4095.619760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.68614 -41.04584 -40.60998 -39.64276 -38.46666 -37.61186 -34.42856 -34.16007 -32.14163 -31.90565 -31.30815 -29.73086 -28.06339 -27.69802 -25.51621 -24.84064 -23.56429 -23.38018 -22.47535 -20.68203 -19.81213 -19.34289 -19.03793 -18.44683 -17.74614 -17.32839 -16.88263 -16.77595 -16.63130 -16.37310 -16.16698 -15.89567 -15.67276 -15.28601 -15.06837 -15.03942 -14.64577 -14.53373 -14.34295 -14.27546 -13.65067 -13.61820 -13.53018 -13.01325 -12.99722 -12.75408 -12.52089 -12.44199 -12.15830 -12.04914 -11.81753 -11.52640 -10.89625 -10.75752 -10.58421 -9.99207 -9.65332 -9.34375 -8.80624 -8.58528 -6.26822 -0.33149 -0.15679 0.36967 0.39970 0.69677 1.37527 1.41148 1.46778 1.54410 1.89465 2.13015 2.37267 2.67860 2.76527 3.02218 3.08201 3.22942 3.46864 3.70108 3.84940 3.91181 3.96441 4.11740 4.18681 4.29379 4.38660 4.39089 4.48861 4.53062 4.65608 4.66695 4.72093 4.75886 4.80166 4.93570 5.05937 5.07494 5.26839 5.35235 5.38615 5.39698 5.60795 5.65256 5.74782 5.87383 6.31019 6.42192 6.63014 6.84332 7.51795 8.61636 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.002201 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.000353 B =12720.450071 C =13473.600731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.117 3.883 4 C -0.155 4.155 5 C -0.070 4.070 6 C -0.066 4.066 7 C -0.268 4.268 8 C 0.153 3.847 9 O -0.220 6.220 10 C 0.197 3.803 11 C -0.270 4.270 12 C 0.179 3.821 13 O -0.196 6.196 14 C -0.421 4.421 15 H 0.114 0.886 16 C -0.011 4.011 17 N -0.904 5.904 18 Si 1.020 2.980 19 H -0.254 1.254 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.207 4.207 23 C 0.008 3.992 24 C -0.315 4.315 25 C 0.429 3.571 26 O -0.512 6.512 27 C -0.068 4.068 28 C -0.209 4.209 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.248 0.752 35 H 0.149 0.851 36 H 0.279 0.721 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.112 0.888 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 -22.915 5.462 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.072 3.928 4 C -0.173 4.173 5 C -0.087 4.087 6 C -0.067 4.067 7 C -0.270 4.270 8 C 0.089 3.911 9 O -0.123 6.123 10 C 0.152 3.848 11 C -0.289 4.289 12 C 0.123 3.877 13 O -0.098 6.098 14 C -0.496 4.496 15 H 0.131 0.869 16 C -0.212 4.212 17 N -0.538 5.538 18 Si 0.838 3.162 19 H -0.178 1.178 20 H -0.197 1.197 21 H -0.179 1.179 22 C -0.226 4.226 23 C -0.010 4.010 24 C -0.317 4.317 25 C 0.317 3.683 26 O -0.398 6.398 27 C -0.086 4.086 28 C -0.228 4.228 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.082 0.918 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.264 0.736 35 H 0.166 0.834 36 H 0.088 0.912 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.130 0.870 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.936 -22.697 5.025 24.564 hybrid contribution -0.087 0.869 0.021 0.873 sum -8.023 -21.828 5.045 23.797 Atomic orbital electron populations 1.23335 0.76655 1.05608 1.02083 1.86044 1.23291 1.26603 1.88579 1.19291 0.92918 0.84315 0.96297 1.20595 0.91361 0.99142 1.06210 1.21290 1.00852 0.89771 0.96824 1.18088 0.92840 0.90361 1.05389 1.21073 1.05091 0.97351 1.03513 1.24705 0.87761 0.83562 0.95105 1.82903 1.56921 1.20728 1.51772 1.18785 0.92454 0.86100 0.87453 1.20304 1.08624 0.91979 1.08033 1.19567 0.89642 0.85829 0.92615 1.83956 1.48413 1.31002 1.46460 1.21987 1.20104 1.00547 1.06956 0.86898 1.26677 0.99733 0.93347 1.01463 1.70141 1.41935 1.03456 1.38304 0.84622 0.77014 0.78491 0.76054 1.17797 1.19707 1.17882 1.20235 0.99435 1.00262 1.02689 1.20495 0.95757 0.89636 0.95133 1.20387 1.06351 0.99731 1.05278 1.19945 0.80702 0.85611 0.82017 1.90612 1.30118 1.82024 1.36997 1.21017 0.94044 0.97295 0.96229 1.21306 1.01013 0.91609 1.08834 0.92256 0.86035 0.91752 0.83126 0.82555 0.73605 0.83395 0.91213 0.84521 0.83382 0.87031 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.07 10.49 -92.60 -0.97 -7.04 16 3 C 0.12 2.39 6.69 22.54 0.15 2.54 16 4 C -0.15 -2.87 9.97 22.33 0.22 -2.65 16 5 C -0.07 -1.31 9.46 22.47 0.21 -1.10 16 6 C -0.07 -1.62 5.38 -20.04 -0.11 -1.73 16 7 C -0.27 -7.24 5.60 -18.78 -0.11 -7.34 16 8 C 0.15 3.28 10.76 67.26 0.72 4.01 16 9 O -0.22 -6.22 9.66 -0.22 0.00 -6.23 16 10 C 0.20 7.08 6.77 22.99 0.16 7.24 16 11 C -0.27 -11.04 9.11 22.50 0.21 -10.83 16 12 C 0.18 8.21 6.65 22.65 0.15 8.36 16 13 O -0.20 -10.69 9.74 -21.02 -0.20 -10.90 16 14 C -0.42 -22.21 9.48 67.93 0.64 -21.56 16 15 H 0.11 5.35 5.17 -2.91 -0.02 5.34 16 16 C -0.01 -0.59 5.49 84.85 0.47 -0.13 16 17 N -0.90 -51.13 13.67 21.62 0.30 -50.83 16 18 Si 1.02 38.83 29.55 68.60 2.03 40.86 16 19 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 20 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 22 C -0.21 -8.43 9.92 22.16 0.22 -8.21 16 23 C 0.01 0.30 9.61 22.20 0.21 0.52 16 24 C -0.31 -11.62 5.89 -19.96 -0.12 -11.74 16 25 C 0.43 15.07 7.09 27.07 0.19 15.27 16 26 O -0.51 -20.27 16.29 -5.01 -0.08 -20.35 16 27 C -0.07 -1.71 9.02 22.48 0.20 -1.51 16 28 C -0.21 -4.43 9.02 22.34 0.20 -4.22 16 29 H 0.06 0.61 7.65 -2.39 -0.02 0.59 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.58 7.65 -2.39 -0.02 0.57 16 32 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.16 2.04 8.04 -2.91 -0.02 2.02 16 34 H 0.25 2.49 7.97 -2.91 -0.02 2.47 16 35 H 0.15 5.92 5.59 -2.91 -0.02 5.91 16 36 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.14 5.25 8.06 -2.91 -0.02 5.23 16 38 H 0.15 4.97 7.80 -2.91 -0.02 4.94 16 39 H 0.11 3.06 7.87 -2.91 -0.02 3.03 16 40 H 0.14 2.40 6.28 -2.91 -0.02 2.38 16 Total: -1.00 -70.32 353.04 6.91 -63.41 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 1.11 Total: 22.86 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 4.74 Total: -31.78 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.30 Total: -50.83 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.26 Total: -44.52 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -70.32 6.91 -63.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002418594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.128 kcal (2) G-P(sol) polarization free energy of solvation -70.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds