Wall clock time and date at job start Tue Mar 31 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99650 * 2 1 4 4 C 1.50702 * 109.47358 * 269.99933 * 3 2 1 5 5 H 1.07998 * 119.99894 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00239 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00116 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00085 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.46916 * 89.99809 * 8 6 4 10 10 H 1.48504 * 109.47520 * 209.99844 * 8 6 4 11 11 H 1.48499 * 109.46993 * 330.00122 * 8 6 4 12 12 C 1.34774 * 120.00118 * 180.02562 * 2 1 3 13 13 O 1.21278 * 119.99801 * 179.97438 * 12 2 1 14 14 C 1.50706 * 120.00046 * 359.97438 * 12 2 1 15 15 S 1.80999 * 109.47068 * 179.97438 * 14 12 2 16 16 C 1.76201 * 100.00057 * 179.97438 * 15 14 12 17 17 N 1.31038 * 125.07585 * 359.95524 * 16 15 14 18 18 C 1.35909 * 109.61555 * 180.02562 * 17 16 15 19 19 C 1.39719 * 133.35636 * 180.02562 * 18 17 16 20 20 C 1.37685 * 119.79622 * 180.28475 * 19 18 17 21 21 C 1.38805 * 120.48213 * 359.43884 * 20 19 18 22 22 Cl 1.73598 * 119.79889 * 180.28254 * 21 20 19 23 23 C 1.38068 * 120.40223 * 0.56685 * 21 20 19 24 24 C 1.38664 * 119.84868 * 359.71682 * 23 21 20 25 25 N 1.36648 * 125.07825 * 180.02562 * 16 15 14 26 26 H 0.96999 * 126.38223 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.47051 * 269.99958 * 1 2 3 28 28 H 1.09002 * 109.47340 * 30.00050 * 1 2 3 29 29 H 1.09006 * 109.47222 * 150.00102 * 1 2 3 30 30 H 1.08997 * 109.47510 * 30.00220 * 3 2 1 31 31 H 1.09003 * 109.47095 * 150.00354 * 3 2 1 32 32 H 0.97004 * 120.00369 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47301 * 59.99756 * 14 12 2 34 34 H 1.08999 * 109.46749 * 299.99869 * 14 12 2 35 35 H 1.08002 * 120.09788 * 0.02562 * 19 18 17 36 36 H 1.07996 * 119.75718 * 179.70231 * 20 19 18 37 37 H 1.07998 * 120.07526 * 179.69619 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1258 2.8780 -1.6727 7 7 3.3446 3.2580 -2.9127 8 14 3.7327 3.9294 -0.2529 9 1 5.1063 3.5083 0.1229 10 1 3.7475 5.3562 -0.6644 11 1 2.8268 3.7593 0.9114 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 16 2.5616 -3.8480 -0.0020 16 6 1.4416 -5.2083 -0.0010 17 7 0.1351 -5.1079 0.0013 18 6 -0.4179 -6.3494 0.0020 19 6 -1.7362 -6.8123 0.0038 20 6 -1.9858 -8.1663 0.0100 21 6 -0.9372 -9.0757 0.0029 22 17 -1.2724 -10.7790 0.0035 23 6 0.3708 -8.6338 0.0012 24 6 0.6398 -7.2735 0.0007 25 7 1.8057 -6.5253 -0.0011 26 1 2.7117 -6.8718 -0.0021 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.8214 4.0839 -3.0899 33 1 0.7584 -2.5299 -0.8902 34 1 0.7591 -2.5302 0.8897 35 1 -2.5568 -6.1101 0.0045 36 1 -3.0050 -8.5234 0.0162 37 1 1.1827 -9.3461 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002621139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:34 Heat of formation + Delta-G solvation = 37.925244 kcal Electronic energy + Delta-G solvation = -22909.857679 eV Core-core repulsion = 19226.388302 eV Total energy + Delta-G solvation = -3683.469377 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.055 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.29655 -39.19826 -38.03178 -36.41687 -35.12416 -33.55161 -32.66100 -30.61870 -30.34438 -29.53004 -27.95122 -25.93956 -24.04497 -22.91130 -22.37075 -21.91042 -19.22056 -18.56951 -17.69944 -17.06681 -17.04190 -16.62520 -15.85170 -15.75921 -15.27335 -15.16767 -15.04743 -14.38998 -14.11135 -13.64482 -13.45084 -13.18329 -13.00702 -12.90252 -12.40635 -12.27462 -12.24199 -12.10404 -11.58636 -11.52862 -11.38711 -11.09641 -10.99556 -10.80024 -10.56732 -10.44641 -10.21019 -9.62933 -9.35035 -9.25856 -8.70605 -8.63961 -7.88953 -7.66170 -6.13460 -4.13317 0.36324 0.78245 0.99110 1.67979 1.83384 2.20203 2.76864 3.04991 3.25801 3.31620 3.33509 3.35724 3.66862 4.00698 4.34965 4.44366 4.67608 4.75498 4.80924 4.86234 5.04965 5.10343 5.19529 5.32873 5.50811 5.56428 5.72650 5.77539 5.82431 5.97539 6.10190 6.26596 6.56718 6.74269 6.82973 7.14842 7.30690 7.53127 8.00374 8.38300 8.67368 8.89574 9.45635 10.99664 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.035221 B = 0.001976 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.791600 B =14166.507523 C =14520.527709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.587 5.587 3 C 0.216 3.784 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.523 3.477 13 O -0.528 6.528 14 C -0.137 4.137 15 S 0.080 5.920 16 C 0.262 3.738 17 N -0.495 5.495 18 C 0.066 3.934 19 C -0.053 4.053 20 C -0.117 4.117 21 C -0.023 4.023 22 Cl -0.066 7.066 23 C -0.098 4.098 24 C 0.060 3.940 25 N -0.582 5.582 26 H 0.429 0.571 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 -24.475 8.141 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.318 5.318 3 C 0.095 3.905 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.307 3.693 13 O -0.406 6.406 14 C -0.289 4.289 15 S 0.311 5.689 16 C -0.112 4.112 17 N -0.220 5.220 18 C -0.055 4.055 19 C -0.073 4.073 20 C -0.138 4.138 21 C -0.051 4.051 22 Cl -0.037 7.037 23 C -0.120 4.120 24 C -0.052 4.052 25 N -0.196 5.196 26 H 0.269 0.731 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.846 -23.601 8.030 26.453 hybrid contribution -0.245 -0.468 0.478 0.713 sum -9.091 -24.070 8.509 27.100 Atomic orbital electron populations 1.21780 0.80338 1.03496 1.00951 1.47735 1.06630 1.06587 1.70893 1.19753 0.92532 0.79510 0.98658 1.21293 1.37352 1.07324 0.91106 0.90650 1.24857 0.95176 0.97319 0.95625 1.69892 1.41213 1.23537 1.18661 0.86848 0.80153 0.79821 0.82848 1.19848 1.21002 1.19039 1.19358 0.87659 0.84075 0.78186 1.90724 1.13211 1.86491 1.50160 1.23843 1.01698 0.94189 1.09131 1.86512 1.01746 0.89635 1.91016 1.26231 0.95514 0.89067 1.00380 1.71100 1.03382 1.23015 1.24530 1.19173 0.93768 0.88721 1.03875 1.20219 0.93768 0.94616 0.98740 1.20766 0.98748 0.91556 1.02756 1.20376 0.93556 0.85080 1.06136 1.98374 1.95480 1.12847 1.96977 1.19624 0.95905 0.91735 1.04756 1.18623 0.86680 0.93298 1.06565 1.42864 1.08427 1.04687 1.63607 0.73059 0.93142 0.90105 0.91777 0.94805 0.94307 0.92472 0.85719 0.85966 0.84096 0.84155 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.85 0.61 1.74 16 2 N -0.59 -11.49 2.86 -182.95 -0.52 -12.01 16 3 C 0.22 5.09 4.23 -5.20 -0.02 5.06 16 4 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 5 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 8 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 12 C 0.52 10.04 7.69 -10.98 -0.08 9.96 16 13 O -0.53 -12.23 15.44 5.56 0.09 -12.14 16 14 C -0.14 -1.94 4.19 36.01 0.15 -1.78 16 15 S 0.08 1.07 21.45 -107.50 -2.31 -1.23 16 16 C 0.26 3.22 8.20 -88.44 -0.73 2.50 16 17 N -0.50 -6.55 10.57 -10.90 -0.12 -6.67 16 18 C 0.07 0.78 7.22 -84.67 -0.61 0.17 16 19 C -0.05 -0.50 10.10 -39.23 -0.40 -0.89 16 20 C -0.12 -0.94 9.79 -39.57 -0.39 -1.32 16 21 C -0.02 -0.19 6.32 -39.43 -0.25 -0.44 16 22 Cl -0.07 -0.50 28.94 -51.86 -1.50 -2.00 16 23 C -0.10 -0.85 9.83 -39.49 -0.39 -1.24 16 24 C 0.06 0.63 7.29 -83.84 -0.61 0.02 16 25 N -0.58 -5.77 6.28 -10.57 -0.07 -5.84 16 26 H 0.43 2.94 8.96 -40.82 -0.37 2.57 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 30 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 31 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.12 1.66 7.40 -51.92 -0.38 1.28 16 34 H 0.12 1.49 8.11 -51.92 -0.42 1.06 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -34.21 349.88 -10.13 -44.34 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.93 Total: -0.25 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.15 Total: 0.50 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.07 Total: -50.92 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.31 Total: -1.23 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.21 -10.13 -44.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002621139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.267 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds