Wall clock time and date at job start Tue Mar 31 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99656 * 2 1 4 4 H 1.48506 * 109.47160 * 270.00063 * 3 2 1 5 5 H 1.48493 * 109.47524 * 29.99908 * 3 2 1 6 6 H 1.48503 * 109.47254 * 150.00283 * 3 2 1 7 7 C 1.37881 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99612 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46734 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99858 * 269.99930 * 10 9 7 12 12 O 1.21285 * 120.00266 * 4.43081 * 11 10 9 13 13 C 1.50707 * 119.99689 * 184.43211 * 11 10 9 14 14 O 1.45200 * 109.46740 * 174.72993 * 13 11 10 15 15 C 1.34717 * 116.99584 * 180.02562 * 14 13 11 16 16 O 1.21471 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.47728 * 119.99561 * 179.97438 * 15 14 13 18 18 C 1.39624 * 120.14893 * 359.72719 * 17 15 14 19 19 C 1.37951 * 119.84508 * 179.74636 * 18 17 15 20 20 C 1.38374 * 120.14677 * 0.52388 * 19 18 17 21 21 C 1.38368 * 120.30274 * 359.74593 * 20 19 18 22 22 C 1.37945 * 120.15213 * 359.97438 * 21 20 19 23 23 C 1.39930 * 119.99689 * 90.00078 * 10 9 7 24 24 C 1.38872 * 120.06914 * 246.70733 * 23 10 9 25 25 C 1.38109 * 119.92865 * 179.97438 * 24 23 10 26 26 C 1.38289 * 120.07137 * 359.97438 * 25 24 23 27 27 C 1.38281 * 120.13806 * 0.04960 * 26 25 24 28 28 C 1.38114 * 120.07160 * 359.94992 * 27 26 25 29 29 H 0.96991 * 120.00637 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46888 * 60.00160 * 9 7 2 31 31 H 1.09001 * 109.46851 * 299.99645 * 9 7 2 32 32 H 1.08998 * 109.47306 * 294.73002 * 13 11 10 33 33 H 1.08998 * 109.46760 * 54.73284 * 13 11 10 34 34 H 1.07995 * 120.08211 * 359.97438 * 18 17 15 35 35 H 1.07993 * 119.92655 * 180.27349 * 19 18 17 36 36 H 1.07993 * 119.84584 * 179.72116 * 20 19 18 37 37 H 1.08001 * 119.92273 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.07560 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03395 * 359.70933 * 24 23 10 40 40 H 1.07998 * 119.96629 * 179.97438 * 25 24 23 41 41 H 1.07995 * 119.92735 * 180.02562 * 26 25 24 42 42 H 1.07997 * 119.95925 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.03326 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6411 -4.1248 -1.1677 12 8 2.3105 -3.6132 -2.2165 13 6 3.5417 -5.3332 -1.1696 14 8 3.7713 -5.7634 -2.5373 15 6 4.5613 -6.8400 -2.7152 16 8 5.0454 -7.4036 -1.7542 17 6 4.8388 -7.3352 -4.0791 18 6 4.2793 -6.6931 -5.1856 19 6 4.5468 -7.1576 -6.4567 20 6 5.3588 -8.2637 -6.6358 21 6 5.9119 -8.9081 -5.5433 22 6 5.6573 -8.4507 -4.2671 23 6 2.6579 -4.1443 1.2113 24 6 3.9904 -4.0041 1.5764 25 6 4.4359 -4.5296 2.7734 26 6 3.5565 -5.1943 3.6083 27 6 2.2291 -5.3360 3.2475 28 6 1.7774 -4.8128 2.0518 29 1 -0.4850 0.8399 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6249 -2.5571 0.8897 32 1 4.4937 -5.0776 -0.7045 33 1 3.0686 -6.1397 -0.6096 34 1 3.6416 -5.8327 -5.0469 35 1 4.1184 -6.6593 -7.3136 36 1 5.5613 -8.6259 -7.6328 37 1 6.5444 -9.7711 -5.6902 38 1 6.0893 -8.9548 -3.4153 39 1 4.6785 -3.4885 0.9229 40 1 5.4721 -4.4213 3.0577 41 1 3.9073 -5.6040 4.5440 42 1 1.5450 -5.8560 3.9016 43 1 0.7405 -4.9235 1.7707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002637321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:15 Heat of formation + Delta-G solvation = -55.015783 kcal Electronic energy + Delta-G solvation = -28128.530684 eV Core-core repulsion = 24104.251403 eV Total energy + Delta-G solvation = -4024.279280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.74166 -39.89659 -38.87454 -38.08717 -36.33720 -34.90458 -32.76593 -31.76381 -31.24083 -30.77669 -29.54611 -29.01892 -26.71493 -24.46019 -23.03775 -22.76963 -22.50487 -22.08626 -20.93631 -19.25714 -18.31949 -17.44831 -16.96523 -16.71161 -16.42535 -16.11238 -15.89496 -15.46006 -14.99985 -14.91656 -14.72683 -14.30659 -14.19228 -14.04878 -13.74310 -13.24703 -13.17239 -13.10399 -12.68379 -12.60989 -12.33922 -12.17239 -11.92416 -11.52698 -11.37116 -11.26508 -11.10756 -10.87941 -10.70245 -10.68848 -10.63418 -10.21427 -9.80074 -9.44056 -9.32439 -9.28167 -8.73549 -8.66657 -8.47945 -7.77426 -6.10105 -4.14641 0.47234 1.08583 1.49640 1.59992 2.36032 2.40922 3.06841 3.29546 3.35289 3.38246 3.55697 3.70097 3.97315 4.40774 4.49810 4.63038 4.67450 4.73613 4.83816 5.09784 5.11239 5.14223 5.17553 5.22066 5.25349 5.26294 5.31697 5.52731 5.63062 5.71412 5.77089 5.95031 6.02574 6.06731 6.15485 6.21117 6.31686 6.55440 6.56575 6.68920 6.71790 6.88460 7.13445 7.25320 7.36337 7.64500 7.84892 8.12017 8.17575 8.69641 8.89213 9.49884 10.98399 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.003205 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.917914 B = 8734.082577 C =10704.873233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.250 3.750 10 N -0.555 5.555 11 C 0.515 3.485 12 O -0.502 6.502 13 C 0.052 3.948 14 O -0.325 6.325 15 C 0.507 3.493 16 O -0.507 6.507 17 C -0.123 4.123 18 C -0.058 4.058 19 C -0.134 4.134 20 C -0.087 4.087 21 C -0.136 4.136 22 C -0.056 4.056 23 C 0.153 3.847 24 C -0.127 4.127 25 C -0.107 4.107 26 C -0.132 4.132 27 C -0.108 4.108 28 C -0.123 4.123 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.801 -17.862 -4.004 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.133 3.867 10 N -0.285 5.285 11 C 0.300 3.700 12 O -0.376 6.376 13 C -0.025 4.025 14 O -0.240 6.240 15 C 0.352 3.648 16 O -0.397 6.397 17 C -0.124 4.124 18 C -0.076 4.076 19 C -0.151 4.151 20 C -0.105 4.105 21 C -0.154 4.154 22 C -0.074 4.074 23 C 0.061 3.939 24 C -0.146 4.146 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.127 4.127 28 C -0.142 4.142 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.537 -17.554 -4.315 20.438 hybrid contribution 0.465 1.079 0.331 1.221 sum 10.002 -16.475 -3.984 19.681 Atomic orbital electron populations 1.69917 1.05982 1.27195 1.50187 1.24904 0.94901 0.99229 0.94881 0.86467 0.79696 0.82846 0.78274 1.20448 1.21076 1.19861 1.21345 0.93422 0.90343 1.51449 0.92302 1.19496 0.86849 0.81370 0.98939 1.45887 1.45876 1.34800 1.01901 1.19724 0.81536 0.84243 0.84448 1.90733 1.55964 1.60542 1.30369 1.22929 1.01462 0.97365 0.80790 1.86578 1.62539 1.43965 1.30922 1.21256 0.75696 0.77961 0.89895 1.90828 1.49332 1.57128 1.42386 1.19134 1.03817 0.99327 0.90121 1.21693 0.95950 0.98363 0.91579 1.21235 0.99372 0.97279 0.97260 1.21474 0.95103 0.94682 0.99207 1.21116 1.01336 1.00947 0.91961 1.21287 0.94434 0.93505 0.98192 1.17791 0.92625 0.95145 0.88291 1.21375 0.95598 1.00141 0.97508 1.20981 0.99646 0.97971 0.93986 1.21091 0.93722 1.00470 0.99698 1.20986 0.95803 0.99824 0.96097 1.21309 1.00085 0.97799 0.95035 0.92593 0.93320 0.94290 0.88259 0.88524 0.83727 0.84955 0.85393 0.85064 0.84477 0.85885 0.85976 0.86235 0.85935 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.25 6.47 5.07 -5.19 -0.03 6.45 16 10 N -0.55 -11.91 2.51 -114.73 -0.29 -12.20 16 11 C 0.51 10.93 7.62 -10.98 -0.08 10.84 16 12 O -0.50 -12.60 16.14 -14.05 -0.23 -12.82 16 13 C 0.05 0.88 4.62 36.01 0.17 1.05 16 14 O -0.33 -5.54 9.01 -47.20 -0.43 -5.97 16 15 C 0.51 7.74 7.90 34.61 0.27 8.01 16 16 O -0.51 -8.38 16.14 -19.24 -0.31 -8.69 16 17 C -0.12 -1.54 5.87 -104.98 -0.62 -2.16 16 18 C -0.06 -0.66 9.62 -39.17 -0.38 -1.03 16 19 C -0.13 -1.18 10.03 -39.64 -0.40 -1.58 16 20 C -0.09 -0.65 10.04 -39.48 -0.40 -1.05 16 21 C -0.14 -1.08 10.03 -39.64 -0.40 -1.48 16 22 C -0.06 -0.58 9.60 -39.17 -0.38 -0.95 16 23 C 0.15 2.78 4.43 -83.69 -0.37 2.41 16 24 C -0.13 -2.06 8.45 -39.39 -0.33 -2.39 16 25 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 26 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 27 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 28 C -0.12 -1.95 9.64 -39.39 -0.38 -2.33 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 31 H 0.04 1.02 7.82 -51.93 -0.41 0.62 16 32 H 0.10 1.57 6.96 -51.93 -0.36 1.21 16 33 H 0.10 1.50 8.02 -51.93 -0.42 1.09 16 34 H 0.14 1.74 7.61 -52.49 -0.40 1.34 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.14 1.34 7.65 -52.49 -0.40 0.93 16 39 H 0.12 1.99 7.89 -52.49 -0.41 1.58 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -33.93 381.79 -10.00 -43.93 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.29 Total: 2.08 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -4.93 Total: -3.39 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.45 Total: -37.74 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.96 Total: -27.48 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.93 -10.00 -43.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002637321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.087 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds