Wall clock time and date at job start Tue Mar 31 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47068 * 299.99363 * 3 2 1 6 6 H 1.48505 * 109.47204 * 59.99395 * 3 2 1 7 7 C 1.37879 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99971 * 0.02562 * 7 2 1 10 10 S 1.80996 * 109.47299 * 179.97438 * 9 7 2 11 11 C 1.76198 * 100.00228 * 180.02562 * 10 9 7 12 12 N 1.32599 * 119.16066 * 359.97438 * 11 10 9 13 13 C 1.32330 * 120.97050 * 179.97438 * 12 11 10 14 14 C 1.38397 * 119.29285 * 0.02562 * 13 12 11 15 15 C 1.39719 * 118.45897 * 359.97438 * 14 13 12 16 16 C 1.48318 * 120.50667 * 179.97438 * 15 14 13 17 17 C 1.39425 * 120.09444 * 4.99899 * 16 15 14 18 18 C 1.38013 * 119.98446 * 179.72639 * 17 16 15 19 19 C 1.38258 * 120.18489 * 359.97438 * 18 17 16 20 20 C 1.38786 * 120.19869 * 0.02562 * 19 18 17 21 21 O 1.35908 * 119.99643 * 180.02562 * 20 19 18 22 22 C 1.42898 * 116.99571 * 0.02562 * 21 20 19 23 23 F 1.39890 * 109.47531 * 300.00023 * 22 21 20 24 24 F 1.39907 * 109.46958 * 60.00353 * 22 21 20 25 25 C 1.38540 * 120.01192 * 0.02562 * 20 19 18 26 26 N 1.32418 * 119.15857 * 180.25238 * 11 10 9 27 27 H 0.97001 * 120.00014 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47130 * 59.99692 * 9 7 2 29 29 H 1.08999 * 109.47481 * 299.99948 * 9 7 2 30 30 H 1.07997 * 120.35173 * 180.02562 * 13 12 11 31 31 H 1.07992 * 120.76999 * 180.02562 * 14 13 12 32 32 H 1.08002 * 120.00733 * 359.69886 * 17 16 15 33 33 H 1.08000 * 119.90272 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.90160 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46901 * 179.97438 * 22 21 20 36 36 H 1.08005 * 120.09129 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4270 -3.8749 0.0005 11 6 1.3069 -5.2350 -0.0002 12 7 0.0024 -4.9977 -0.0001 13 6 -0.8707 -5.9921 -0.0012 14 6 -0.4105 -7.2973 -0.0019 15 6 0.9694 -7.5167 -0.0021 16 6 1.5123 -8.8969 -0.0023 17 6 0.6499 -9.9874 -0.1075 18 6 1.1580 -11.2706 -0.1131 19 6 2.5213 -11.4788 -0.0153 20 6 3.3867 -10.3989 0.0898 21 8 4.7262 -10.6084 0.1853 22 6 5.1732 -11.9656 0.1706 23 9 4.6072 -12.6547 1.2485 24 9 4.7822 -12.5724 -1.0279 25 6 2.8855 -9.1074 0.0973 26 7 1.7894 -6.4682 0.0047 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 -1.9311 -5.7873 -0.0015 31 1 -1.1018 -8.1269 -0.0032 32 1 -0.4155 -9.8280 -0.1841 33 1 0.4888 -12.1143 -0.1943 34 1 2.9140 -12.4849 -0.0206 35 1 6.2598 -11.9911 0.2528 36 1 3.5578 -8.2661 0.1795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002787091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:50 Heat of formation + Delta-G solvation = -75.812461 kcal Electronic energy + Delta-G solvation = -24772.390726 eV Core-core repulsion = 20597.618543 eV Total energy + Delta-G solvation = -4174.772183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.064 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.76119 -47.74555 -40.79275 -39.99372 -37.78180 -33.95370 -33.17000 -32.39128 -31.01624 -29.94823 -28.55820 -26.56191 -24.90129 -24.58807 -23.06763 -22.39179 -21.99435 -19.44836 -18.58688 -18.31489 -17.74155 -17.21941 -16.65639 -16.37507 -15.91937 -15.38866 -15.06642 -14.95829 -14.78147 -14.74455 -14.37712 -14.32486 -14.06379 -13.93740 -13.46499 -13.29801 -13.05429 -12.89456 -12.58481 -12.39481 -12.20208 -11.84150 -11.40526 -11.01058 -10.94852 -10.75494 -10.66850 -10.12651 -10.04739 -9.63498 -9.29235 -8.96865 -8.93683 -8.69191 -8.60133 -6.97181 -6.20973 -4.27973 0.35180 1.07289 1.14594 1.71221 2.04553 2.17172 3.05014 3.23940 3.31197 3.34151 3.37945 3.45863 3.88506 4.01447 4.05799 4.22987 4.33080 4.46362 4.53166 4.70516 4.76940 4.85786 5.05581 5.15873 5.19137 5.24553 5.33681 5.54348 5.82836 5.83436 6.04542 6.14578 6.25153 6.46348 6.75330 7.12959 7.19253 7.24836 7.69348 7.94164 8.22594 8.73685 9.35527 10.89594 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002215 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.784748 B =12637.875052 C =13759.022969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.069 3.931 10 S -0.034 6.034 11 C 0.311 3.689 12 N -0.514 5.514 13 C 0.167 3.833 14 C -0.246 4.246 15 C 0.219 3.781 16 C -0.014 4.014 17 C -0.116 4.116 18 C -0.088 4.088 19 C -0.179 4.179 20 C 0.098 3.902 21 O -0.317 6.317 22 C 0.411 3.589 23 F -0.199 7.199 24 F -0.199 7.199 25 C -0.088 4.088 26 N -0.505 5.505 27 H 0.266 0.734 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.169 0.831 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.183 0.817 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -26.554 0.166 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.086 0.914 9 C -0.078 4.078 10 S 0.206 5.794 11 C -0.062 4.062 12 N -0.231 5.231 13 C -0.003 4.003 14 C -0.274 4.274 15 C 0.070 3.930 16 C -0.015 4.015 17 C -0.136 4.136 18 C -0.106 4.106 19 C -0.198 4.198 20 C 0.055 3.945 21 O -0.234 6.234 22 C 0.321 3.679 23 F -0.181 7.181 24 F -0.181 7.181 25 C -0.107 4.107 26 N -0.222 5.222 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.186 0.814 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.199 0.801 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.430 -25.363 0.189 25.939 hybrid contribution -1.853 -0.294 -0.028 1.876 sum 3.577 -25.657 0.160 25.906 Atomic orbital electron populations 1.69985 1.06108 1.27272 1.48732 1.24938 0.94967 0.99185 0.94411 0.86302 0.80075 0.82506 0.77807 1.19365 1.20657 1.20661 1.20698 0.93394 0.88780 1.53625 0.91417 1.21357 0.94285 0.89796 1.02399 1.85853 1.11975 0.94638 1.86976 1.25595 0.92563 0.95503 0.92560 1.69024 1.02368 1.36157 1.15601 1.23193 1.00181 0.87942 0.88943 1.22570 0.96313 0.99592 1.08913 1.19934 0.89956 0.91704 0.91426 1.18184 0.92336 0.90254 1.00704 1.21232 1.00062 0.91500 1.00769 1.20831 0.94281 0.96953 0.98522 1.21639 0.94810 0.98201 1.05150 1.18727 0.81202 0.94511 1.00088 1.86661 1.22335 1.26195 1.88243 1.23394 0.97344 0.75268 0.71887 1.93095 1.88004 1.80335 1.56693 1.93101 1.93208 1.83856 1.47961 1.20629 0.95065 0.94728 1.00316 1.68579 1.39007 0.98133 1.16496 0.92454 0.92960 0.92955 0.81433 0.83832 0.84753 0.84832 0.84822 0.80097 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.29 55.43 0.74 -24.83 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 3 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.58 9.13 -34.44 -0.31 -14.89 16 8 H 0.07 1.84 7.71 -52.49 -0.40 1.44 16 9 C 0.07 1.81 4.56 36.00 0.16 1.98 16 10 S -0.03 -0.76 22.16 -107.50 -2.38 -3.14 16 11 C 0.31 6.48 7.85 -90.92 -0.71 5.77 16 12 N -0.51 -10.36 9.12 -13.51 -0.12 -10.48 16 13 C 0.17 2.54 11.29 -17.28 -0.20 2.35 16 14 C -0.25 -3.25 9.52 -38.97 -0.37 -3.62 16 15 C 0.22 3.38 6.75 -82.61 -0.56 2.83 16 16 C -0.01 -0.18 5.87 -104.92 -0.62 -0.79 16 17 C -0.12 -1.15 9.43 -39.22 -0.37 -1.52 16 18 C -0.09 -0.78 10.03 -39.66 -0.40 -1.18 16 19 C -0.18 -1.81 8.25 -39.37 -0.32 -2.13 16 20 C 0.10 1.14 6.48 -39.27 -0.25 0.88 16 21 O -0.32 -3.23 10.43 -19.45 -0.20 -3.44 16 22 C 0.41 2.74 5.98 101.05 0.60 3.34 16 23 F -0.20 -1.59 15.57 2.25 0.04 -1.56 16 24 F -0.20 -1.60 15.58 2.25 0.04 -1.57 16 25 C -0.09 -1.17 9.53 -39.08 -0.37 -1.54 16 26 N -0.50 -9.48 9.56 -9.98 -0.10 -9.58 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.05 1.45 8.11 -51.91 -0.42 1.03 16 29 H 0.05 1.45 8.11 -51.92 -0.42 1.03 16 30 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.14 1.28 6.34 -52.49 -0.33 0.95 16 32 H 0.13 0.99 6.29 -52.49 -0.33 0.66 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.20 5.08 -52.49 -0.27 0.93 16 35 H 0.18 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.15 2.17 7.58 -52.48 -0.40 1.77 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -32.80 338.48 -8.71 -41.51 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.98 Total: -1.36 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -3.82 Total: -6.69 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.52 Total: -44.89 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -0.20 Total: -3.44 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.12 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.38 Total: -3.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.80 -8.71 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002787091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.304 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds