Wall clock time and date at job start Tue Mar 31 2020 05:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47068 * 299.99363 * 3 2 1 6 6 H 1.48505 * 109.47204 * 59.99395 * 3 2 1 7 7 C 1.37879 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99971 * 0.02562 * 7 2 1 10 10 S 1.80996 * 109.47299 * 179.97438 * 9 7 2 11 11 C 1.76198 * 100.00228 * 180.02562 * 10 9 7 12 12 N 1.32599 * 119.16066 * 359.97438 * 11 10 9 13 13 C 1.32330 * 120.97050 * 179.97438 * 12 11 10 14 14 C 1.38397 * 119.29285 * 0.02562 * 13 12 11 15 15 C 1.39719 * 118.45897 * 359.97438 * 14 13 12 16 16 C 1.48318 * 120.50667 * 179.97438 * 15 14 13 17 17 C 1.39425 * 120.09444 * 4.99899 * 16 15 14 18 18 C 1.38013 * 119.98446 * 179.72639 * 17 16 15 19 19 C 1.38258 * 120.18489 * 359.97438 * 18 17 16 20 20 C 1.38786 * 120.19869 * 0.02562 * 19 18 17 21 21 O 1.35908 * 119.99643 * 180.02562 * 20 19 18 22 22 C 1.42898 * 116.99571 * 0.02562 * 21 20 19 23 23 F 1.39890 * 109.47531 * 300.00023 * 22 21 20 24 24 F 1.39907 * 109.46958 * 60.00353 * 22 21 20 25 25 C 1.38540 * 120.01192 * 0.02562 * 20 19 18 26 26 N 1.32418 * 119.15857 * 180.25238 * 11 10 9 27 27 H 0.97001 * 120.00014 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47130 * 59.99692 * 9 7 2 29 29 H 1.08999 * 109.47481 * 299.99948 * 9 7 2 30 30 H 1.07997 * 120.35173 * 180.02562 * 13 12 11 31 31 H 1.07992 * 120.76999 * 180.02562 * 14 13 12 32 32 H 1.08002 * 120.00733 * 359.69886 * 17 16 15 33 33 H 1.08000 * 119.90272 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.90160 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46901 * 179.97438 * 22 21 20 36 36 H 1.08005 * 120.09129 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4270 -3.8749 0.0005 11 6 1.3069 -5.2350 -0.0002 12 7 0.0024 -4.9977 -0.0001 13 6 -0.8707 -5.9921 -0.0012 14 6 -0.4105 -7.2973 -0.0019 15 6 0.9694 -7.5167 -0.0021 16 6 1.5123 -8.8969 -0.0023 17 6 0.6499 -9.9874 -0.1075 18 6 1.1580 -11.2706 -0.1131 19 6 2.5213 -11.4788 -0.0153 20 6 3.3867 -10.3989 0.0898 21 8 4.7262 -10.6084 0.1853 22 6 5.1732 -11.9656 0.1706 23 9 4.6072 -12.6547 1.2485 24 9 4.7822 -12.5724 -1.0279 25 6 2.8855 -9.1074 0.0973 26 7 1.7894 -6.4682 0.0047 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 -1.9311 -5.7873 -0.0015 31 1 -1.1018 -8.1269 -0.0032 32 1 -0.4155 -9.8280 -0.1841 33 1 0.4888 -12.1143 -0.1943 34 1 2.9140 -12.4849 -0.0206 35 1 6.2598 -11.9911 0.2528 36 1 3.5578 -8.2661 0.1795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002787091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:47 Heat of formation + Delta-G solvation = -95.732794 kcal Electronic energy + Delta-G solvation = -24773.254536 eV Core-core repulsion = 20597.618543 eV Total energy + Delta-G solvation = -4175.635994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.064 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.33445 -48.32350 -41.99909 -40.89293 -38.59935 -35.39379 -35.08595 -33.61687 -31.88047 -31.04609 -30.55857 -27.18144 -26.17106 -25.83884 -24.93997 -23.37299 -22.92590 -20.33092 -19.24675 -19.13403 -18.90528 -18.39419 -18.26619 -17.56367 -17.03062 -16.58770 -16.37763 -16.24536 -15.83517 -15.68001 -15.53838 -15.00391 -14.98241 -14.66388 -14.65409 -14.49750 -14.39949 -14.33399 -13.99317 -13.59859 -13.36283 -12.85982 -12.76642 -12.57961 -12.44808 -12.21233 -12.00775 -11.64430 -11.59891 -11.33644 -11.19937 -10.74041 -10.35783 -9.90248 -9.51353 -8.70784 -8.32935 -6.49089 -0.69728 -0.15653 0.26001 0.42500 0.64003 1.41400 1.41804 1.52387 1.56407 1.61218 2.36899 2.41815 2.51393 2.84637 2.88014 3.01353 3.40402 3.49201 3.53622 3.68570 3.76182 3.86797 3.97910 4.11044 4.18877 4.35360 4.43997 4.53307 4.85893 4.95343 5.04364 5.05840 5.22029 5.26560 5.34023 5.45601 5.54740 5.81604 5.95895 5.96200 6.58972 6.87037 7.19504 8.79195 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002215 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.784748 B =12637.875052 C =13759.022969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.068 0.932 9 C 0.087 3.913 10 S -0.048 6.048 11 C 0.291 3.709 12 N -0.553 5.553 13 C 0.154 3.846 14 C -0.212 4.212 15 C 0.204 3.796 16 C -0.034 4.034 17 C -0.105 4.105 18 C -0.078 4.078 19 C -0.179 4.179 20 C 0.088 3.912 21 O -0.334 6.334 22 C 0.407 3.593 23 F -0.207 7.207 24 F -0.207 7.207 25 C -0.114 4.114 26 N -0.522 5.522 27 H 0.271 0.729 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.207 0.793 31 H 0.200 0.800 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.146 0.854 35 H 0.232 0.768 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -29.326 0.079 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.086 0.914 9 C -0.061 4.061 10 S 0.190 5.810 11 C -0.084 4.084 12 N -0.272 5.272 13 C -0.013 4.013 14 C -0.238 4.238 15 C 0.057 3.943 16 C -0.035 4.035 17 C -0.124 4.124 18 C -0.096 4.096 19 C -0.197 4.197 20 C 0.045 3.955 21 O -0.252 6.252 22 C 0.318 3.682 23 F -0.189 7.189 24 F -0.189 7.189 25 C -0.134 4.134 26 N -0.240 5.240 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.224 0.776 31 H 0.217 0.783 32 H 0.187 0.813 33 H 0.191 0.809 34 H 0.164 0.836 35 H 0.248 0.752 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.470 -28.194 0.102 28.546 hybrid contribution -1.639 0.199 0.000 1.651 sum 2.831 -27.995 0.101 28.138 Atomic orbital electron populations 1.70100 1.07772 1.28585 1.49220 1.25930 0.95887 1.03035 0.93476 0.85185 0.78825 0.77502 0.78254 1.18638 1.19705 1.19718 1.21047 0.93623 0.89980 1.54121 0.91397 1.20843 0.94308 0.91441 0.99484 1.85485 1.11830 0.94648 1.89029 1.25017 0.92678 0.95385 0.95335 1.68927 1.02622 1.38802 1.16833 1.23936 1.01196 0.88011 0.88186 1.23126 0.95976 1.00328 1.04360 1.20559 0.91056 0.91916 0.90800 1.18248 0.92679 0.89779 1.02826 1.21575 1.01198 0.90657 0.98978 1.21311 0.94176 0.97790 0.96308 1.21927 0.95474 0.98151 1.04198 1.18820 0.82215 0.94320 1.00175 1.86651 1.21761 1.28628 1.88185 1.24230 0.99220 0.73619 0.71143 1.93075 1.88362 1.80355 1.57070 1.93080 1.93448 1.83853 1.48517 1.20541 0.95410 0.94964 1.02454 1.68490 1.40398 0.98174 1.16950 0.91971 0.95830 0.95837 0.77639 0.78270 0.81347 0.80905 0.83640 0.75205 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 13.29 21.45 0.28 -54.45 16 2 C 0.02 1.05 5.46 84.66 0.46 1.51 16 3 Si 0.98 43.75 29.54 68.60 2.03 45.78 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.79 9.13 25.60 0.23 -31.56 16 8 H 0.07 3.84 7.71 -2.91 -0.02 3.82 16 9 C 0.09 4.90 4.56 71.23 0.32 5.22 16 10 S -0.05 -2.29 22.16 -56.49 -1.25 -3.55 16 11 C 0.29 12.73 7.85 180.45 1.42 14.14 16 12 N -0.55 -22.99 9.12 -196.64 -1.79 -24.78 16 13 C 0.15 4.46 11.29 84.66 0.96 5.41 16 14 C -0.21 -4.94 9.52 22.67 0.22 -4.73 16 15 C 0.20 6.13 6.75 41.99 0.28 6.41 16 16 C -0.03 -0.84 5.87 -20.06 -0.12 -0.96 16 17 C -0.10 -1.65 9.43 22.50 0.21 -1.44 16 18 C -0.08 -1.06 10.03 22.22 0.22 -0.83 16 19 C -0.18 -3.15 8.25 22.41 0.18 -2.96 16 20 C 0.09 1.99 6.48 22.47 0.15 2.14 16 21 O -0.33 -6.68 10.43 -92.51 -0.96 -7.65 16 22 C 0.41 4.68 5.98 113.37 0.68 5.36 16 23 F -0.21 -2.91 15.57 44.97 0.70 -2.21 16 24 F -0.21 -2.94 15.58 44.97 0.70 -2.24 16 25 C -0.11 -3.09 9.53 22.59 0.22 -2.87 16 26 N -0.52 -20.34 9.56 -185.50 -1.77 -22.11 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.02 1.40 8.11 -2.40 -0.02 1.38 16 29 H 0.02 1.40 8.11 -2.40 -0.02 1.38 16 30 H 0.21 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.20 2.30 6.34 -2.91 -0.02 2.28 16 32 H 0.17 1.41 6.29 -2.91 -0.02 1.39 16 33 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.15 2.19 5.08 -2.91 -0.01 2.18 16 35 H 0.23 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.12 3.90 7.58 -2.91 -0.02 3.88 16 Total: -1.00 -77.73 338.48 4.51 -73.22 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 1.15 Total: 3.16 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.43 Total: -5.16 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -3.28 Total: -101.35 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.96 Total: -7.65 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 1.40 Total: -4.46 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -1.25 Total: -3.55 kcal Total: -77.73 4.51 -73.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002787091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.518 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds