Wall clock time and date at job start Tue Mar 31 2020 05:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39901 * 120.16612 * 338.76573 * 3 2 1 5 5 F 1.35095 * 120.11481 * 0.02562 * 4 3 2 6 6 C 1.38237 * 119.77819 * 179.72664 * 4 3 2 7 7 C 1.38284 * 120.12418 * 0.25640 * 6 4 3 8 8 C 1.38400 * 120.34210 * 359.97438 * 7 6 4 9 9 C 1.37914 * 120.22046 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.06332 * 179.97438 * 9 8 7 11 11 C 1.47200 * 109.47308 * 233.82888 * 10 9 8 12 12 N 3.25253 * 84.75557 * 196.94105 * 2 1 3 13 13 C 1.52996 * 109.47225 * 113.82549 * 10 9 8 14 14 C 1.50695 * 109.47181 * 300.00171 * 13 10 9 15 15 H 1.07999 * 120.00329 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00081 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99753 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99978 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47284 * 60.00240 * 18 16 14 20 20 H 1.48502 * 109.46876 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47258 * 299.99818 * 18 16 14 22 22 C 1.50705 * 109.46985 * 353.82821 * 10 9 8 23 23 C 1.38247 * 119.97531 * 123.68773 * 22 10 9 24 24 C 1.38201 * 120.02440 * 179.76640 * 23 22 10 25 25 C 1.38459 * 119.97284 * 0.50298 * 24 23 22 26 26 F 1.35098 * 120.02124 * 179.76795 * 25 24 23 27 27 C 1.38459 * 119.95041 * 359.74672 * 25 24 23 28 28 C 1.38191 * 119.97423 * 0.02562 * 27 25 24 29 29 H 1.07997 * 119.94000 * 180.27922 * 6 4 3 30 30 H 1.08000 * 119.82784 * 179.97438 * 7 6 4 31 31 H 1.08003 * 119.88516 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.46915 * 60.00243 * 13 10 9 33 33 H 1.09003 * 109.47199 * 180.02562 * 13 10 9 34 34 H 0.97005 * 119.99510 * 179.97438 * 17 16 14 35 35 H 1.07998 * 119.98286 * 0.02562 * 23 22 10 36 36 H 1.08000 * 120.00722 * 180.25333 * 24 23 22 37 37 H 1.07995 * 120.01075 * 179.97438 * 27 25 24 38 38 H 1.08000 * 119.98870 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2715 -1.1265 0.4381 5 9 2.6023 -2.2206 0.8625 6 6 4.6539 -1.1192 0.4294 7 6 5.3393 0.0002 -0.0059 8 6 4.6484 1.1197 -0.4358 9 6 3.2693 1.1279 -0.4331 10 6 2.5207 2.3490 -0.9014 11 6 1.5705 2.7716 0.1404 12 7 0.8387 3.0984 0.9438 13 6 1.7564 2.0176 -2.1847 14 6 2.7291 1.5850 -3.2512 15 1 3.7868 1.5503 -3.0356 16 6 2.2688 1.2334 -4.5025 17 7 0.9808 1.2752 -4.7651 18 14 3.4747 0.6978 -5.8248 19 1 4.2133 -0.5049 -5.3633 20 1 2.7327 0.3749 -7.0699 21 1 4.4366 1.7972 -6.0922 22 6 3.4977 3.4640 -1.1724 23 6 3.5323 4.0648 -2.4170 24 6 4.4246 5.0906 -2.6652 25 6 5.2912 5.5094 -1.6699 26 9 6.1670 6.5090 -1.9129 27 6 5.2592 4.9035 -0.4254 28 6 4.3629 3.8811 -0.1781 29 1 5.1996 -1.9895 0.7627 30 1 6.4193 0.0008 -0.0103 31 1 5.1912 1.9898 -0.7746 32 1 1.0497 1.2112 -1.9887 33 1 1.2152 2.9010 -2.5237 34 1 0.6571 1.0282 -5.6455 35 1 2.8589 3.7351 -3.1944 36 1 4.4485 5.5625 -3.6363 37 1 5.9350 5.2292 0.3515 38 1 4.3375 3.4086 0.7927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003133849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:33 Heat of formation + Delta-G solvation = 26.401317 kcal Electronic energy + Delta-G solvation = -28705.940956 eV Core-core repulsion = 24535.990238 eV Total energy + Delta-G solvation = -4169.950718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.93728 -48.72147 -40.69102 -38.46495 -36.63534 -35.91843 -34.61161 -32.70486 -31.28766 -31.03067 -29.76306 -28.65086 -26.38121 -24.07928 -22.83165 -22.49981 -22.23823 -20.89908 -19.08555 -17.87139 -17.56253 -17.00637 -16.24646 -16.19549 -15.77892 -15.68453 -15.47259 -15.22097 -14.91392 -14.67501 -14.22587 -13.73579 -13.54521 -13.43396 -13.25104 -13.13713 -13.00167 -12.92483 -12.60555 -12.41340 -12.18281 -12.13195 -12.01779 -11.79833 -11.61431 -11.38287 -11.17205 -11.05011 -10.89951 -10.68706 -10.35757 -9.88314 -9.53402 -8.84675 -8.81047 -8.64722 -8.61257 -8.35459 -6.27197 -4.31677 0.75084 1.16659 1.28698 1.52644 2.91403 3.05837 3.11453 3.14841 3.19460 3.26505 3.27886 3.73655 3.88535 4.03222 4.12659 4.22198 4.36672 4.45638 4.68342 4.79896 4.99108 5.06755 5.09365 5.13817 5.24337 5.25190 5.47498 5.58376 5.67710 5.87516 5.93178 6.01340 6.13025 6.23854 6.25739 6.30698 6.41049 6.69027 6.74808 6.89167 7.12272 7.21751 7.23563 7.66078 7.80684 7.81891 7.96958 8.70118 9.31641 10.82521 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008383 B = 0.006092 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.143730 B = 4594.839289 C = 5854.192193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.249 3.751 3 C -0.045 4.045 4 C 0.143 3.857 5 F -0.131 7.131 6 C -0.160 4.160 7 C -0.061 4.061 8 C -0.120 4.120 9 C 0.035 3.965 10 C 0.113 3.887 11 C 0.219 3.781 12 N -0.430 5.430 13 C 0.031 3.969 14 C -0.526 4.526 15 H 0.070 0.930 16 C 0.068 3.932 17 N -0.880 5.880 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.272 1.272 22 C -0.082 4.082 23 C -0.038 4.038 24 C -0.164 4.164 25 C 0.097 3.903 26 F -0.147 7.147 27 C -0.169 4.169 28 C -0.086 4.086 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.267 0.733 35 H 0.178 0.822 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.024 1.002 7.034 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.066 4.066 3 C -0.050 4.050 4 C 0.121 3.879 5 F -0.109 7.109 6 C -0.179 4.179 7 C -0.080 4.080 8 C -0.138 4.138 9 C 0.031 3.969 10 C 0.110 3.890 11 C -0.099 4.099 12 N -0.105 5.105 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.088 0.912 16 C -0.136 4.136 17 N -0.517 5.517 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.084 4.084 23 C -0.055 4.055 24 C -0.183 4.183 25 C 0.078 3.922 26 F -0.126 7.126 27 C -0.188 4.188 28 C -0.104 4.104 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.195 0.805 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.980 1.459 8.133 12.957 hybrid contribution 1.269 -0.602 -1.212 1.855 sum 11.249 0.858 6.921 13.236 Atomic orbital electron populations 1.81183 1.11687 1.06110 1.07815 1.25131 0.92390 0.94848 0.94248 1.15760 0.85309 0.95439 1.08463 1.17504 0.90110 0.82244 0.97994 1.91523 1.80831 1.51440 1.87139 1.21013 0.91194 1.00904 1.04740 1.21168 1.00529 0.91501 0.94815 1.21342 0.92555 0.99940 0.99965 1.19208 0.93478 0.91992 0.92197 1.16409 0.89977 0.89915 0.92739 1.28969 0.93963 0.93485 0.93455 1.81059 1.09986 1.08494 1.10945 1.19509 0.95483 0.98943 0.86738 1.20959 0.93412 1.46574 0.95433 0.91171 1.24953 0.95058 0.94996 0.98619 1.69950 1.12827 1.46341 1.22550 0.86666 0.81087 0.79609 0.80969 1.19862 1.21268 1.19691 1.19281 0.97149 0.97166 0.94783 1.21935 0.96434 0.90054 0.97115 1.21276 0.97746 0.99923 0.99328 1.17850 0.90848 0.88345 0.95125 1.91464 1.67335 1.58773 1.94979 1.20881 1.02611 0.99211 0.96106 1.20938 0.94598 0.95829 0.99057 0.83936 0.84173 0.83307 0.94363 0.94226 0.92343 0.80468 0.84795 0.85124 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -8.62 18.41 41.84 0.77 -7.85 16 2 C 0.25 4.98 10.46 -22.47 -0.24 4.74 16 3 C -0.05 -0.77 5.57 -106.82 -0.59 -1.36 16 4 C 0.14 2.05 7.28 -38.96 -0.28 1.76 16 5 F -0.13 -1.96 16.81 2.25 0.04 -1.93 16 6 C -0.16 -1.71 10.01 -39.56 -0.40 -2.11 16 7 C -0.06 -0.61 10.04 -39.50 -0.40 -1.00 16 8 C -0.12 -1.49 7.80 -39.64 -0.31 -1.80 16 9 C 0.04 0.56 3.73 -104.22 -0.39 0.17 16 10 C 0.11 1.99 0.31 -159.60 -0.05 1.94 16 11 C 0.22 4.16 11.39 -20.80 -0.24 3.92 16 12 N -0.43 -8.74 18.53 42.11 0.78 -7.96 16 13 C 0.03 0.68 3.30 -27.89 -0.09 0.58 16 14 C -0.53 -11.61 5.72 -34.44 -0.20 -11.81 16 15 H 0.07 1.45 6.48 -52.49 -0.34 1.11 16 16 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.88 -23.18 13.29 55.43 0.74 -22.44 16 18 Si 0.89 18.76 29.54 -169.99 -5.02 13.73 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.08 -1.27 3.43 -104.61 -0.36 -1.63 16 23 C -0.04 -0.61 7.96 -39.59 -0.32 -0.92 16 24 C -0.16 -2.31 10.03 -39.51 -0.40 -2.71 16 25 C 0.10 1.30 7.30 -39.42 -0.29 1.02 16 26 F -0.15 -1.99 17.27 2.25 0.04 -1.95 16 27 C -0.17 -2.02 10.03 -39.52 -0.40 -2.42 16 28 C -0.09 -1.09 6.74 -39.59 -0.27 -1.36 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.15 1.70 5.21 -52.48 -0.27 1.43 16 32 H 0.04 0.93 5.91 -51.93 -0.31 0.63 16 33 H 0.04 0.91 7.34 -51.93 -0.38 0.53 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.18 3.24 4.89 -52.49 -0.26 2.99 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.13 1.42 7.59 -52.49 -0.40 1.03 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -27.99 339.66 -5.62 -33.61 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -2.78 Total: 1.12 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -5.30 Total: -11.45 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 2.29 Total: -38.25 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.99 -5.62 -33.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003133849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.007 kcal (2) G-P(sol) polarization free energy of solvation -27.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds