Wall clock time and date at job start Tue Mar 31 2020 05:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.37991 * 120.00001 * 45.21696 * 3 2 1 5 5 C 1.46191 * 120.00060 * 353.19433 * 4 3 2 6 6 C 1.38613 * 126.88247 * 343.10105 * 5 4 3 7 7 N 1.34128 * 107.78488 * 180.13929 * 6 5 4 8 8 C 1.46501 * 125.10620 * 179.84400 * 7 6 5 9 9 C 1.50698 * 109.47042 * 124.72020 * 8 7 6 10 10 H 1.08002 * 120.00247 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00064 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99904 * 359.72303 * 11 9 8 13 13 Si 1.86804 * 120.00058 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46963 * 179.72284 * 13 11 9 15 15 H 1.48498 * 109.47251 * 299.72367 * 13 11 9 16 16 H 1.48502 * 109.46950 * 59.72906 * 13 11 9 17 17 N 1.39736 * 109.78638 * 359.58033 * 7 6 5 18 18 C 1.31315 * 109.24080 * 0.26475 * 17 7 6 19 19 C 1.48225 * 126.52512 * 179.97438 * 18 17 7 20 20 C 1.39423 * 120.12946 * 144.75073 * 19 18 17 21 21 C 1.37994 * 119.86983 * 179.69828 * 20 19 18 22 22 C 1.38344 * 120.12395 * 0.59508 * 21 20 19 23 23 C 1.38331 * 120.25972 * 359.68213 * 22 21 20 24 24 C 1.37988 * 120.13240 * 0.02562 * 23 22 21 25 25 C 1.46838 * 120.00043 * 225.21375 * 3 2 1 26 26 N 1.34779 * 119.99736 * 359.97438 * 25 3 2 27 27 S 1.71195 * 120.00340 * 180.02562 * 25 3 2 28 28 H 1.08000 * 119.99667 * 173.19027 * 4 3 2 29 29 H 1.08001 * 126.10471 * 0.02562 * 6 5 4 30 30 H 1.08998 * 109.47473 * 4.72309 * 8 7 6 31 31 H 1.09001 * 109.47181 * 244.72057 * 8 7 6 32 32 H 0.97001 * 119.99553 * 0.28286 * 12 11 9 33 33 H 1.08005 * 120.06349 * 359.97438 * 20 19 18 34 34 H 1.07992 * 119.93937 * 180.31769 * 21 20 19 35 35 H 1.08002 * 119.86359 * 179.69957 * 22 21 20 36 36 H 1.08008 * 119.92877 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.06617 * 180.02562 * 24 23 22 38 38 H 0.97005 * 120.00116 * 0.02562 * 26 25 3 39 39 H 0.97001 * 120.00113 * 179.97438 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2584 -0.8409 -0.8482 5 6 2.5356 -1.8364 -1.6380 6 6 1.2418 -2.2866 -1.4264 7 7 0.9655 -3.1980 -2.3709 8 6 -0.3025 -3.9204 -2.4993 9 6 -0.8593 -3.7155 -3.8846 10 1 -0.3221 -3.1082 -4.5981 11 6 -2.0539 -4.3041 -4.2415 12 7 -2.7048 -5.0489 -3.3747 13 14 -2.7438 -4.0506 -5.9589 14 1 -4.0255 -4.7888 -6.0914 15 1 -2.9804 -2.6027 -6.1886 16 1 -1.7738 -4.5590 -6.9619 17 7 2.0667 -3.3505 -3.2176 18 6 3.0326 -2.5553 -2.8188 19 6 4.3700 -2.4108 -3.4412 20 6 4.9989 -1.1668 -3.4678 21 6 6.2468 -1.0397 -4.0431 22 6 6.8683 -2.1412 -4.6037 23 6 6.2467 -3.3768 -4.5854 24 6 5.0015 -3.5173 -4.0075 25 6 3.3018 0.8968 0.9025 26 7 2.6275 1.7191 1.7306 27 16 5.0138 0.8981 0.9021 28 1 4.3326 -0.7639 -0.9286 29 1 0.5759 -1.9629 -0.6401 30 1 -1.0120 -3.5429 -1.7631 31 1 -0.1336 -4.9838 -2.3293 32 1 -2.3464 -5.1808 -2.4831 33 1 4.5123 -0.3052 -3.0350 34 1 6.7371 -0.0776 -4.0598 35 1 7.8429 -2.0359 -5.0572 36 1 6.7370 -4.2333 -5.0242 37 1 4.5173 -4.4826 -3.9934 38 1 1.6575 1.7187 1.7306 39 1 3.1122 2.3109 2.3271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003308155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:16 Heat of formation + Delta-G solvation = 153.591429 kcal Electronic energy + Delta-G solvation = -24948.290139 eV Core-core repulsion = 21369.987936 eV Total energy + Delta-G solvation = -3578.302203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02271 -38.88577 -38.32186 -36.25329 -34.74073 -33.74794 -32.68035 -30.96669 -30.35307 -29.69304 -27.16338 -24.91849 -23.98603 -23.67328 -22.53463 -22.18421 -20.54971 -19.97558 -18.76870 -18.06165 -17.25902 -16.90132 -16.15043 -15.93796 -15.25007 -15.00221 -14.97550 -14.47104 -14.22550 -14.16957 -13.92519 -13.57179 -13.39530 -13.33036 -13.03442 -12.95277 -12.76541 -12.40636 -12.16354 -12.07407 -11.45721 -11.28298 -11.24050 -11.10839 -10.92289 -10.60877 -10.28386 -10.21973 -9.90864 -9.10653 -8.94079 -8.77061 -8.65724 -8.37608 -7.83603 -7.72571 -6.78830 -4.55700 -0.16011 1.03018 1.31238 1.41607 1.85070 2.21830 2.44435 2.73243 2.77956 3.08879 3.27742 3.28850 3.33327 3.48083 3.74943 3.86436 4.16628 4.24803 4.42819 4.53736 4.92555 4.95494 4.97313 5.04236 5.13508 5.14422 5.35818 5.43821 5.57590 5.68837 5.80424 5.98247 6.02826 6.12782 6.27223 6.28988 6.39194 6.48551 6.53686 6.57781 6.65841 6.93783 7.08866 7.30151 7.33833 7.87441 8.06221 8.37433 9.12621 10.59175 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.004016 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.671094 B = 6969.641830 C = 9746.951195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.254 3.746 3 C -0.195 4.195 4 C 0.191 3.809 5 C -0.291 4.291 6 C 0.117 3.883 7 N -0.296 5.296 8 C 0.237 3.763 9 C -0.616 4.616 10 H 0.067 0.933 11 C 0.029 3.971 12 N -0.897 5.897 13 Si 1.077 2.923 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.282 1.282 17 N -0.251 5.251 18 C 0.141 3.859 19 C -0.012 4.012 20 C -0.094 4.094 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.086 4.086 25 C 0.432 3.568 26 N -0.773 5.773 27 S -0.592 6.592 28 H 0.177 0.823 29 H 0.180 0.820 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.267 0.733 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.400 0.600 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.791 9.114 4.943 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.060 4.060 3 C -0.208 4.208 4 C 0.161 3.839 5 C -0.303 4.303 6 C -0.041 4.041 7 N -0.067 5.067 8 C 0.120 3.880 9 C -0.653 4.653 10 H 0.085 0.915 11 C -0.177 4.177 12 N -0.531 5.531 13 Si 0.903 3.097 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.209 1.209 17 N -0.069 5.069 18 C -0.028 4.028 19 C -0.014 4.014 20 C -0.113 4.113 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.106 4.106 25 C 0.178 3.822 26 N -0.305 5.305 27 S -0.455 6.455 28 H 0.194 0.806 29 H 0.197 0.803 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.232 0.768 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 12.242 7.781 3.168 14.848 hybrid contribution 0.506 1.220 2.028 2.420 sum 12.749 9.001 5.196 16.449 Atomic orbital electron populations 1.81398 1.11407 1.08526 1.08271 1.25546 0.92522 0.93687 0.94228 1.16708 0.84028 1.09521 1.10522 1.23043 1.00581 0.80818 0.79483 1.20131 0.95344 1.10105 1.04734 1.23769 0.95435 0.91050 0.93833 1.49230 1.12995 1.27536 1.16920 1.20122 0.74860 0.92128 1.00941 1.21994 1.09622 1.37039 0.96683 0.91522 1.25968 0.93316 0.92562 1.05854 1.70874 1.40361 1.35426 1.06451 0.83417 0.76485 0.76578 0.73262 1.20289 1.21079 1.20851 1.77530 0.93559 1.21507 1.14286 1.22055 0.93374 0.94094 0.93291 1.17724 0.89855 0.94338 0.99467 1.21223 0.95160 0.96163 0.98759 1.21055 0.94937 0.99028 0.98492 1.21249 0.99868 0.92880 0.99163 1.21079 0.95177 0.97751 0.99962 1.21267 0.94763 0.98451 0.96079 1.23432 0.96879 0.80723 0.81191 1.43325 1.11245 1.38140 1.37813 1.93317 0.91191 1.80737 1.80231 0.80608 0.80292 0.93205 0.93589 0.92241 0.85470 0.85479 0.85993 0.85756 0.85382 0.76817 0.74301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.32 17.37 41.84 0.73 -5.59 16 2 C 0.25 3.32 10.97 -22.47 -0.25 3.08 16 3 C -0.20 -2.28 5.90 -104.58 -0.62 -2.89 16 4 C 0.19 2.36 8.28 -36.48 -0.30 2.06 16 5 C -0.29 -4.49 6.06 -103.06 -0.62 -5.12 16 6 C 0.12 2.05 9.99 -16.41 -0.16 1.89 16 7 N -0.30 -6.17 3.62 -61.86 -0.22 -6.40 16 8 C 0.24 5.56 5.52 -5.19 -0.03 5.53 16 9 C -0.62 -16.37 9.20 -34.44 -0.32 -16.69 16 10 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 11 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 12 N -0.90 -25.11 13.65 55.43 0.76 -24.36 16 13 Si 1.08 24.03 29.90 -169.99 -5.08 18.95 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 N -0.25 -5.13 12.26 34.62 0.42 -4.71 16 18 C 0.14 2.37 6.94 -80.48 -0.56 1.81 16 19 C -0.01 -0.17 5.84 -104.91 -0.61 -0.78 16 20 C -0.09 -1.11 8.73 -39.23 -0.34 -1.46 16 21 C -0.12 -1.19 10.03 -39.63 -0.40 -1.58 16 22 C -0.11 -1.09 10.04 -39.51 -0.40 -1.49 16 23 C -0.12 -1.30 10.03 -39.64 -0.40 -1.69 16 24 C -0.09 -1.13 9.76 -39.23 -0.38 -1.52 16 25 C 0.43 4.60 7.29 -12.78 -0.09 4.50 16 26 N -0.77 -5.57 8.82 32.49 0.29 -5.28 16 27 S -0.59 -8.05 29.15 -107.50 -3.13 -11.18 16 28 H 0.18 2.01 5.79 -52.49 -0.30 1.71 16 29 H 0.18 2.96 5.07 -52.49 -0.27 2.70 16 30 H 0.05 1.16 7.92 -51.93 -0.41 0.75 16 31 H 0.05 1.11 8.00 -51.93 -0.42 0.69 16 32 H 0.27 7.29 7.22 -40.82 -0.29 7.00 16 33 H 0.13 1.39 6.71 -52.48 -0.35 1.03 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.40 2.46 7.70 -40.82 -0.31 2.14 16 39 H 0.42 2.26 8.81 -40.82 -0.36 1.90 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -31.68 363.39 -9.96 -41.64 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.61 Total: 5.12 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -5.58 Total: -13.67 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 1.97 Total: -46.34 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.08 Total: 18.95 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -3.13 Total: -11.18 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.68 -9.96 -41.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003308155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.233 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds