Wall clock time and date at job start Tue Mar 31 2020 05:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38136 * 120.03094 * 2 1 4 4 C 1.38260 * 120.06578 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.13651 * 0.02562 * 4 3 2 6 6 C 1.38099 * 120.06704 * 359.70128 * 5 4 3 7 7 C 1.38822 * 120.03689 * 180.02562 * 2 1 3 8 8 N 1.40130 * 120.06723 * 359.95501 * 7 2 1 9 9 C 1.36867 * 127.17631 * 269.98001 * 8 7 2 10 10 S 1.76201 * 126.40404 * 359.97438 * 9 8 7 11 11 C 1.76199 * 99.99986 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 10 9 13 13 C 1.38687 * 119.99871 * 179.72328 * 11 10 9 14 14 N 1.31624 * 120.00170 * 0.27766 * 13 11 10 15 15 Si 1.86803 * 120.00021 * 180.27923 * 13 11 10 16 16 H 1.48498 * 109.47174 * 90.00153 * 15 13 11 17 17 H 1.48501 * 109.47062 * 210.00104 * 15 13 11 18 18 H 1.48495 * 109.46833 * 329.99727 * 15 13 11 19 19 N 1.31671 * 107.19657 * 180.26088 * 9 8 7 20 20 N 1.28503 * 110.07391 * 359.61215 * 19 9 8 21 21 C 1.31526 * 109.99096 * 0.39496 * 20 19 9 22 22 C 1.47715 * 126.45100 * 179.79773 * 21 20 19 23 23 C 1.40068 * 120.93336 * 164.68146 * 22 21 20 24 24 C 1.37893 * 118.98954 * 179.75193 * 23 22 21 25 25 N 1.31972 * 120.90532 * 0.53359 * 24 23 22 26 26 C 1.31959 * 122.07535 * 359.73363 * 25 24 23 27 27 C 1.37891 * 120.91110 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47522 * 269.97714 * 1 2 3 29 29 H 1.09006 * 109.47457 * 29.97892 * 1 2 3 30 30 H 1.08997 * 109.47275 * 149.97178 * 1 2 3 31 31 H 1.08003 * 119.97183 * 0.04679 * 3 2 1 32 32 H 1.08004 * 119.93519 * 180.02562 * 4 3 2 33 33 H 1.08007 * 119.96722 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.03347 * 180.27632 * 6 5 4 35 35 H 0.96991 * 119.99951 * 179.97438 * 14 13 11 36 36 H 1.08002 * 120.50318 * 0.02562 * 23 22 21 37 37 H 1.08000 * 119.55227 * 180.26548 * 24 23 22 38 38 H 1.07999 * 119.54493 * 179.97438 * 26 25 24 39 39 H 1.08003 * 120.51000 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2760 0.0011 -0.0016 6 6 3.5905 -1.1977 0.0041 7 6 2.2019 -1.2018 -0.0005 8 7 1.5034 -2.4166 -0.0001 9 6 1.0923 -3.1339 1.0906 10 16 1.3427 -2.7028 2.7806 11 6 0.5574 -4.0712 3.5651 12 1 0.1085 -4.8512 2.9680 13 6 0.5211 -4.1497 4.9492 14 7 1.0685 -3.1993 5.6770 15 14 -0.3047 -5.6043 5.7809 16 1 0.6922 -6.6842 5.9938 17 1 -0.8586 -5.1767 7.0907 18 1 -1.4042 -6.1083 4.9194 19 7 0.4800 -4.2094 0.6411 20 7 0.4737 -4.2087 -0.6439 21 6 1.0885 -3.1374 -1.0960 22 6 1.2941 -2.7761 -2.5134 23 6 1.6734 -1.4779 -2.8778 24 6 1.8594 -1.1858 -4.2125 25 7 1.6747 -2.1063 -5.1400 26 6 1.3123 -3.3394 -4.8410 27 6 1.1099 -3.7205 -3.5314 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6583 2.1313 0.0008 32 1 4.1193 2.1330 -0.0001 33 1 5.3561 0.0049 -0.0024 34 1 4.1339 -2.1311 0.0078 35 1 1.0428 -3.2541 6.6450 36 1 1.8223 -0.7185 -2.1244 37 1 2.1561 -0.1889 -4.5033 38 1 1.1722 -4.0601 -5.6331 39 1 0.8137 -4.7316 -3.2940 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003572708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:35 Heat of formation + Delta-G solvation = 138.705410 kcal Electronic energy + Delta-G solvation = -26039.550239 eV Core-core repulsion = 22460.602530 eV Total energy + Delta-G solvation = -3578.947709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.090 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.42212 -39.90458 -39.45814 -34.67169 -33.25083 -32.79536 -32.73287 -31.26410 -29.86796 -29.34714 -27.02983 -25.83052 -24.37797 -23.73250 -23.10387 -22.00709 -21.41304 -20.63557 -18.59830 -17.66558 -16.65703 -16.33888 -16.08502 -15.91208 -15.78152 -15.21801 -15.01618 -14.62823 -14.31716 -14.02749 -13.81813 -13.72171 -13.42513 -13.31789 -13.07442 -12.47032 -12.17640 -11.82312 -11.69794 -11.47741 -11.40665 -11.21865 -11.16455 -10.82116 -10.62685 -10.34249 -10.18692 -9.98025 -9.59900 -9.46435 -9.24653 -9.02181 -8.95620 -8.74159 -8.70910 -6.88571 -6.56149 -4.31174 0.76683 0.97224 1.09328 1.18559 2.25449 2.34888 3.08758 3.14368 3.18829 3.27527 3.36550 3.47586 3.88479 3.93862 4.25168 4.38247 4.66381 4.68212 4.71737 4.87378 4.88485 4.93518 4.99993 5.09452 5.11737 5.29428 5.40387 5.53013 5.56297 5.62167 5.64071 5.75053 5.79335 5.84601 6.05432 6.10104 6.18809 6.29137 6.34916 6.36486 6.47311 6.59013 6.65484 7.35256 7.48239 7.88846 8.27765 8.95690 9.19680 10.51704 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.004171 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.165563 B = 6711.168891 C = 8214.715774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 C -0.115 4.115 4 C -0.101 4.101 5 C -0.116 4.116 6 C -0.091 4.091 7 C 0.120 3.880 8 N -0.431 5.431 9 C 0.187 3.813 10 S 0.161 5.839 11 C -0.540 4.540 12 H 0.106 0.894 13 C 0.078 3.922 14 N -0.875 5.875 15 Si 0.933 3.067 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 N -0.302 5.302 20 N -0.252 5.252 21 C 0.163 3.837 22 C 0.057 3.943 23 C -0.172 4.172 24 C 0.103 3.897 25 N -0.489 5.489 26 C 0.100 3.900 27 C -0.142 4.142 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.276 0.724 36 H 0.139 0.861 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 9.855 -13.916 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.119 4.119 5 C -0.134 4.134 6 C -0.111 4.111 7 C 0.029 3.971 8 N -0.126 5.126 9 C -0.181 4.181 10 S 0.396 5.604 11 C -0.689 4.689 12 H 0.124 0.876 13 C -0.132 4.132 14 N -0.510 5.510 15 Si 0.758 3.242 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.189 1.189 19 N -0.148 5.148 20 N -0.094 5.094 21 C -0.101 4.101 22 C 0.046 3.954 23 C -0.194 4.194 24 C -0.054 4.054 25 N -0.199 5.199 26 C -0.056 4.056 27 C -0.164 4.164 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.556 9.716 -13.957 17.606 hybrid contribution -0.436 -0.973 1.112 1.541 sum 4.120 8.743 -12.845 16.076 Atomic orbital electron populations 1.20859 0.90351 1.02866 1.03782 1.20057 0.96875 0.91726 0.97670 1.20963 0.94245 0.96947 1.01155 1.21269 0.94141 0.98308 0.98187 1.21028 1.00253 0.91515 1.00625 1.21271 0.92290 0.99498 0.97997 1.17310 0.90605 0.83192 1.06018 1.43497 1.45688 1.18081 1.05318 1.28726 0.98843 0.91961 0.98535 1.83682 1.66765 1.30469 0.79519 1.23278 1.42529 1.09249 0.93808 0.87571 1.25080 0.94633 0.97550 0.95894 1.69935 1.41717 1.32381 1.06963 0.85915 0.79690 0.80457 0.78185 1.19825 1.20579 1.18902 1.74873 1.21506 1.17478 1.00964 1.74238 1.14951 1.15530 1.04718 1.22441 1.06194 0.93298 0.88160 1.17801 0.96246 0.93595 0.87762 1.22518 1.01625 0.96557 0.98687 1.22557 0.95847 0.98674 0.88306 1.67632 1.12140 1.02077 1.38099 1.22660 0.94998 0.93048 0.94905 1.22220 1.00452 1.00959 0.92756 0.89670 0.90872 0.91710 0.84960 0.85252 0.85051 0.85350 0.91469 0.84317 0.82669 0.82336 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.77 36.00 0.35 -1.30 16 2 C -0.06 -0.84 4.30 -104.44 -0.45 -1.29 16 3 C -0.11 -1.21 9.70 -39.61 -0.38 -1.59 16 4 C -0.10 -0.96 10.04 -39.55 -0.40 -1.36 16 5 C -0.12 -1.24 10.04 -39.61 -0.40 -1.64 16 6 C -0.09 -1.27 9.97 -39.40 -0.39 -1.66 16 7 C 0.12 1.88 3.42 -83.61 -0.29 1.60 16 8 N -0.43 -8.21 1.93 -58.12 -0.11 -8.32 16 9 C 0.19 4.29 8.03 -87.70 -0.70 3.58 16 10 S 0.16 3.97 21.58 -107.50 -2.32 1.65 16 11 C -0.54 -14.83 9.37 30.90 0.29 -14.54 16 12 H 0.11 3.01 6.92 -52.49 -0.36 2.65 16 13 C 0.08 2.09 5.49 -17.47 -0.10 1.99 16 14 N -0.88 -23.94 13.22 55.48 0.73 -23.21 16 15 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 18 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 19 N -0.30 -7.41 11.03 30.81 0.34 -7.07 16 20 N -0.25 -5.55 12.06 32.60 0.39 -5.16 16 21 C 0.16 3.11 7.25 -153.60 -1.11 1.99 16 22 C 0.06 0.88 5.91 -104.65 -0.62 0.26 16 23 C -0.17 -2.28 9.36 -39.02 -0.37 -2.65 16 24 C 0.10 1.21 11.17 -17.62 -0.20 1.01 16 25 N -0.49 -6.21 10.35 -13.37 -0.14 -6.35 16 26 C 0.10 1.18 11.17 -17.62 -0.20 0.98 16 27 C -0.14 -1.92 9.81 -39.02 -0.38 -2.31 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.06 1.02 7.04 -51.93 -0.37 0.66 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.14 1.79 4.29 -52.49 -0.23 1.56 16 37 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.15 1.91 8.02 -52.48 -0.42 1.49 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -31.81 354.97 -10.01 -41.81 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.89 Total: 2.34 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -5.34 Total: -16.91 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 1.22 Total: -50.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -2.32 Total: 1.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.81 -10.01 -41.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003572708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.516 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds