Wall clock time and date at job start Tue Mar 31 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38136 * 120.03094 * 2 1 4 4 C 1.38260 * 120.06578 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.13651 * 0.02562 * 4 3 2 6 6 C 1.38099 * 120.06704 * 359.70128 * 5 4 3 7 7 C 1.38822 * 120.03689 * 180.02562 * 2 1 3 8 8 N 1.40130 * 120.06723 * 359.95501 * 7 2 1 9 9 C 1.36867 * 127.17631 * 269.98001 * 8 7 2 10 10 S 1.76201 * 126.40404 * 359.97438 * 9 8 7 11 11 C 1.76199 * 99.99986 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 10 9 13 13 C 1.38687 * 119.99871 * 179.72328 * 11 10 9 14 14 N 1.31624 * 120.00170 * 0.27766 * 13 11 10 15 15 Si 1.86803 * 120.00021 * 180.27923 * 13 11 10 16 16 H 1.48498 * 109.47174 * 90.00153 * 15 13 11 17 17 H 1.48501 * 109.47062 * 210.00104 * 15 13 11 18 18 H 1.48495 * 109.46833 * 329.99727 * 15 13 11 19 19 N 1.31671 * 107.19657 * 180.26088 * 9 8 7 20 20 N 1.28503 * 110.07391 * 359.61215 * 19 9 8 21 21 C 1.31526 * 109.99096 * 0.39496 * 20 19 9 22 22 C 1.47715 * 126.45100 * 179.79773 * 21 20 19 23 23 C 1.40068 * 120.93336 * 164.68146 * 22 21 20 24 24 C 1.37893 * 118.98954 * 179.75193 * 23 22 21 25 25 N 1.31972 * 120.90532 * 0.53359 * 24 23 22 26 26 C 1.31959 * 122.07535 * 359.73363 * 25 24 23 27 27 C 1.37891 * 120.91110 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47522 * 269.97714 * 1 2 3 29 29 H 1.09006 * 109.47457 * 29.97892 * 1 2 3 30 30 H 1.08997 * 109.47275 * 149.97178 * 1 2 3 31 31 H 1.08003 * 119.97183 * 0.04679 * 3 2 1 32 32 H 1.08004 * 119.93519 * 180.02562 * 4 3 2 33 33 H 1.08007 * 119.96722 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.03347 * 180.27632 * 6 5 4 35 35 H 0.96991 * 119.99951 * 179.97438 * 14 13 11 36 36 H 1.08002 * 120.50318 * 0.02562 * 23 22 21 37 37 H 1.08000 * 119.55227 * 180.26548 * 24 23 22 38 38 H 1.07999 * 119.54493 * 179.97438 * 26 25 24 39 39 H 1.08003 * 120.51000 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2760 0.0011 -0.0016 6 6 3.5905 -1.1977 0.0041 7 6 2.2019 -1.2018 -0.0005 8 7 1.5034 -2.4166 -0.0001 9 6 1.0923 -3.1339 1.0906 10 16 1.3427 -2.7028 2.7806 11 6 0.5574 -4.0712 3.5651 12 1 0.1085 -4.8512 2.9680 13 6 0.5211 -4.1497 4.9492 14 7 1.0685 -3.1993 5.6770 15 14 -0.3047 -5.6043 5.7809 16 1 0.6922 -6.6842 5.9938 17 1 -0.8586 -5.1767 7.0907 18 1 -1.4042 -6.1083 4.9194 19 7 0.4800 -4.2094 0.6411 20 7 0.4737 -4.2087 -0.6439 21 6 1.0885 -3.1374 -1.0960 22 6 1.2941 -2.7761 -2.5134 23 6 1.6734 -1.4779 -2.8778 24 6 1.8594 -1.1858 -4.2125 25 7 1.6747 -2.1063 -5.1400 26 6 1.3123 -3.3394 -4.8410 27 6 1.1099 -3.7205 -3.5314 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6583 2.1313 0.0008 32 1 4.1193 2.1330 -0.0001 33 1 5.3561 0.0049 -0.0024 34 1 4.1339 -2.1311 0.0078 35 1 1.0428 -3.2541 6.6450 36 1 1.8223 -0.7185 -2.1244 37 1 2.1561 -0.1889 -4.5033 38 1 1.1722 -4.0601 -5.6331 39 1 0.8137 -4.7316 -3.2940 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003572708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:34 Heat of formation + Delta-G solvation = 122.077733 kcal Electronic energy + Delta-G solvation = -26040.271269 eV Core-core repulsion = 22460.602530 eV Total energy + Delta-G solvation = -3579.668740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.090 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.98967 -40.97940 -40.48386 -35.99075 -34.79751 -34.45955 -33.78724 -32.28138 -31.01054 -30.84594 -28.07691 -27.85345 -25.67387 -24.91538 -24.18901 -23.23006 -22.72030 -21.89515 -20.14678 -19.19975 -17.88214 -17.62796 -17.41298 -17.01631 -16.94159 -16.81849 -16.57044 -15.91243 -15.31574 -15.11584 -15.03735 -14.89267 -14.71117 -14.42175 -14.24535 -13.59324 -13.43637 -13.19566 -13.07758 -13.03590 -12.81431 -12.72418 -12.51523 -12.29933 -12.11220 -12.03335 -11.84859 -11.46148 -11.23258 -10.93726 -10.63962 -10.29597 -10.23096 -9.97984 -9.73804 -8.77675 -8.57447 -6.37267 -0.45714 -0.02769 0.10023 0.25813 0.56589 0.84119 1.33895 1.36842 1.49340 1.59266 1.74361 2.08927 2.55376 2.80542 2.83599 2.93640 2.99964 3.50192 3.63725 3.67662 3.73892 3.91108 4.03368 4.06846 4.20755 4.28187 4.37473 4.40268 4.46863 4.53435 4.54049 4.59842 4.70297 4.81400 4.84410 4.94123 5.06178 5.20631 5.28895 5.37720 5.41427 5.42386 5.59826 5.71849 6.04245 6.15989 6.88837 6.90072 7.51867 8.51902 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.004171 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.165563 B = 6711.168891 C = 8214.715774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.105 4.105 4 C -0.083 4.083 5 C -0.107 4.107 6 C -0.111 4.111 7 C 0.078 3.922 8 N -0.415 5.415 9 C 0.173 3.827 10 S 0.138 5.862 11 C -0.566 4.566 12 H 0.085 0.915 13 C 0.037 3.963 14 N -0.901 5.901 15 Si 0.994 3.006 16 H -0.265 1.265 17 H -0.263 1.263 18 H -0.271 1.271 19 N -0.340 5.340 20 N -0.295 5.295 21 C 0.192 3.808 22 C 0.022 3.978 23 C -0.164 4.164 24 C 0.111 3.889 25 N -0.492 5.492 26 C 0.110 3.890 27 C -0.145 4.145 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.031 0.969 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.112 0.888 35 H 0.282 0.718 36 H 0.145 0.855 37 H 0.194 0.806 38 H 0.194 0.806 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 12.798 -16.078 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.123 4.123 4 C -0.101 4.101 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.011 4.011 8 N -0.107 5.107 9 C -0.198 4.198 10 S 0.371 5.629 11 C -0.715 4.715 12 H 0.103 0.897 13 C -0.170 4.170 14 N -0.536 5.536 15 Si 0.815 3.185 16 H -0.190 1.190 17 H -0.187 1.187 18 H -0.196 1.196 19 N -0.186 5.186 20 N -0.135 5.135 21 C -0.075 4.075 22 C 0.012 3.988 23 C -0.186 4.186 24 C -0.045 4.045 25 N -0.202 5.202 26 C -0.047 4.047 27 C -0.167 4.167 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.051 0.949 31 H 0.185 0.815 32 H 0.191 0.809 33 H 0.179 0.821 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.162 0.838 37 H 0.210 0.790 38 H 0.211 0.789 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.927 12.675 -16.165 21.380 hybrid contribution -0.756 -1.718 1.445 2.369 sum 5.171 10.958 -14.720 19.065 Atomic orbital electron populations 1.20807 0.90975 1.03012 1.02580 1.20167 0.96644 0.92113 0.98735 1.21387 0.95023 0.96755 0.99129 1.21787 0.93775 0.99429 0.95087 1.21410 1.01747 0.90587 0.98830 1.21326 0.91585 1.00532 0.99565 1.17736 0.91390 0.82376 1.09620 1.43611 1.44391 1.18720 1.03976 1.28343 1.00114 0.92712 0.98632 1.83282 1.68392 1.30432 0.80821 1.23358 1.43579 1.09926 0.94608 0.89683 1.25900 0.94957 1.00067 0.96048 1.69988 1.42452 1.33729 1.07462 0.85020 0.78584 0.77381 0.77504 1.18978 1.18710 1.19599 1.74736 1.22496 1.18894 1.02454 1.74152 1.17801 1.17813 1.03774 1.23185 1.02720 0.91755 0.89811 1.17997 0.99280 0.95604 0.85948 1.22631 1.00720 0.95473 0.99758 1.23116 0.94265 0.99973 0.87175 1.67764 1.11770 1.02386 1.38300 1.23145 0.93366 0.93466 0.94674 1.22347 1.00387 1.00667 0.93335 0.91645 0.87220 0.94938 0.81543 0.80862 0.82109 0.86993 0.90833 0.83787 0.78967 0.78931 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.77 71.24 0.70 -2.49 16 2 C -0.08 -1.96 4.30 -19.75 -0.08 -2.04 16 3 C -0.10 -1.80 9.70 22.25 0.22 -1.59 16 4 C -0.08 -1.17 10.04 22.29 0.22 -0.95 16 5 C -0.11 -1.96 10.04 22.25 0.22 -1.74 16 6 C -0.11 -3.05 9.97 22.39 0.22 -2.82 16 7 C 0.08 2.49 3.42 38.10 0.13 2.62 16 8 N -0.42 -16.71 1.93 -337.79 -0.65 -17.36 16 9 C 0.17 8.53 8.03 179.33 1.44 9.97 16 10 S 0.14 7.27 21.58 -56.49 -1.22 6.05 16 11 C -0.57 -33.02 9.37 67.93 0.64 -32.39 16 12 H 0.09 5.19 6.92 -2.91 -0.02 5.17 16 13 C 0.04 2.06 5.49 84.83 0.47 2.52 16 14 N -0.90 -50.62 13.22 21.63 0.29 -50.33 16 15 Si 0.99 44.05 29.55 68.60 2.03 46.07 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 N -0.34 -18.09 11.03 -56.44 -0.62 -18.72 16 20 N -0.29 -13.93 12.06 -50.76 -0.61 -14.54 16 21 C 0.19 7.68 7.25 136.10 0.99 8.67 16 22 C 0.02 0.70 5.91 -19.88 -0.12 0.58 16 23 C -0.16 -4.08 9.36 22.63 0.21 -3.87 16 24 C 0.11 2.23 11.17 84.59 0.94 3.17 16 25 N -0.49 -10.87 10.35 -196.21 -2.03 -12.90 16 26 C 0.11 2.31 11.17 84.59 0.94 3.26 16 27 C -0.15 -3.88 9.81 22.63 0.22 -3.66 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.11 2.05 8.09 -2.38 -0.02 2.03 16 30 H 0.03 1.06 7.04 -2.39 -0.02 1.05 16 31 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.11 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.14 3.45 4.29 -2.91 -0.01 3.44 16 37 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.14 3.84 8.02 -2.91 -0.02 3.81 16 Total: -1.00 -75.98 354.97 5.64 -70.34 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.10 Total: 12.13 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 7.36 Total: -20.75 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.63 Total: -113.84 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -1.22 Total: 6.05 kcal Total: -75.98 5.64 -70.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003572708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.421 kcal (2) G-P(sol) polarization free energy of solvation -75.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds