Wall clock time and date at job start Tue Mar 31 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50688 * 110.53773 * 2 1 4 4 C 1.38266 * 119.99729 * 88.87751 * 3 2 1 5 5 C 1.38218 * 120.02322 * 180.25780 * 4 3 2 6 6 C 1.38247 * 120.00802 * 359.76720 * 5 4 3 7 7 C 1.38303 * 119.98836 * 359.97438 * 6 5 4 8 8 Br 1.89102 * 120.00806 * 180.02562 * 7 6 5 9 9 C 1.38200 * 119.99770 * 268.62262 * 3 2 1 10 10 N 1.47312 * 110.60002 * 237.16669 * 2 1 3 11 11 C 1.34522 * 106.62402 * 241.32569 * 10 2 1 12 12 O 1.21524 * 123.77212 * 180.02562 * 11 10 2 13 13 N 1.33797 * 112.45734 * 359.97438 * 11 10 2 14 14 C 1.37506 * 124.17673 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00320 * 327.08746 * 14 13 11 16 16 C 1.38902 * 119.99759 * 147.08781 * 14 13 11 17 17 N 1.31386 * 119.99858 * 340.12423 * 16 14 13 18 18 Si 1.86800 * 119.99889 * 160.12574 * 16 14 13 19 19 H 1.48495 * 109.47143 * 59.99684 * 18 16 14 20 20 H 1.48498 * 109.47108 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47183 * 299.99659 * 18 16 14 22 22 C 1.34770 * 111.64415 * 0.02562 * 13 11 10 23 23 O 1.21229 * 127.16135 * 180.02562 * 22 13 11 24 24 H 1.09004 * 109.46980 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.47435 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47035 * 300.00234 * 1 2 3 27 27 H 1.07997 * 119.98778 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.00208 * 179.74330 * 5 4 3 29 29 H 1.08003 * 120.00224 * 180.02562 * 6 5 4 30 30 H 1.08001 * 120.00025 * 0.02562 * 9 3 2 31 31 H 0.97002 * 126.68743 * 61.35065 * 10 2 1 32 32 H 0.97003 * 119.99608 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4111 0.0000 4 6 2.2792 2.0667 1.1972 5 6 2.7591 3.3629 1.1977 6 6 3.0233 4.0028 0.0011 7 6 2.8079 3.3456 -1.1965 8 35 3.1698 4.2201 -2.8337 9 6 2.3280 2.0481 -1.1965 10 7 2.0483 -0.7477 -1.1586 11 6 2.7627 -1.7752 -0.6653 12 8 3.3325 -2.5957 -1.3574 13 7 2.7766 -1.7924 0.6725 14 6 3.4330 -2.7369 1.4261 15 1 3.5179 -3.7515 1.0659 16 6 3.9868 -2.3860 2.6506 17 7 4.2376 -1.1249 2.9209 18 14 4.3752 -3.7070 3.9130 19 1 5.3515 -4.6677 3.3397 20 1 4.9541 -3.0769 5.1267 21 1 3.1279 -4.4263 4.2764 22 6 2.0668 -0.7704 1.1901 23 8 1.8942 -0.5188 2.3634 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.0721 1.5674 2.1322 28 1 2.9273 3.8761 2.1330 29 1 3.3986 5.0155 0.0017 30 1 2.1592 1.5346 -2.1316 31 1 1.9031 -0.5393 -2.0948 32 1 4.6247 -0.8799 3.7759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003572813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:26 Heat of formation + Delta-G solvation = -2.529085 kcal Electronic energy + Delta-G solvation = -21635.979712 eV Core-core repulsion = 18223.168363 eV Total energy + Delta-G solvation = -3412.811349 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.54315 -38.99730 -37.16632 -35.46232 -34.32753 -32.34112 -31.89241 -30.81203 -29.62460 -28.75659 -25.88924 -24.18757 -22.43789 -22.20909 -20.79717 -19.87756 -17.67213 -17.04407 -16.22849 -15.81411 -15.35395 -15.12521 -14.85743 -14.27603 -14.12431 -13.83662 -13.62037 -13.37445 -13.28279 -12.66429 -12.47451 -12.10329 -12.02358 -11.67215 -11.24726 -11.11540 -11.04676 -10.87183 -10.73966 -10.45561 -10.29953 -9.70445 -9.33105 -9.00955 -8.85913 -8.68805 -8.48983 -8.00291 -6.47103 -4.23249 1.23772 1.35154 1.63350 2.86698 3.19868 3.23890 3.25686 3.46585 3.72112 4.11209 4.33166 4.42285 4.61829 4.87825 5.05618 5.09649 5.22012 5.31623 5.50108 5.53783 5.69405 5.81069 5.87582 5.98042 6.17951 6.23270 6.52933 6.55527 6.67891 6.94707 7.39600 7.54085 7.89952 8.13302 8.66288 8.95521 9.13753 9.72023 10.62239 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019709 B = 0.004080 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.309338 B = 6861.865147 C = 7256.866846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.157 3.843 3 C -0.071 4.071 4 C -0.075 4.075 5 C -0.113 4.113 6 C -0.092 4.092 7 C -0.095 4.095 8 Br -0.062 7.062 9 C -0.075 4.075 10 N -0.738 5.738 11 C 0.680 3.320 12 O -0.567 6.567 13 N -0.403 5.403 14 C -0.353 4.353 15 H 0.104 0.896 16 C 0.059 3.941 17 N -0.825 5.825 18 Si 0.932 3.068 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.270 1.270 22 C 0.502 3.498 23 O -0.458 6.458 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.421 0.579 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 12.929 -6.778 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 C -0.073 4.073 4 C -0.093 4.093 5 C -0.132 4.132 6 C -0.112 4.112 7 C -0.174 4.174 8 Br 0.023 6.977 9 C -0.095 4.095 10 N -0.403 5.403 11 C 0.383 3.617 12 O -0.444 6.444 13 N -0.134 5.134 14 C -0.479 4.479 15 H 0.121 0.879 16 C -0.153 4.153 17 N -0.457 5.457 18 Si 0.757 3.243 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.195 1.195 22 C 0.288 3.712 23 O -0.329 6.329 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.171 0.829 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.264 0.736 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.459 12.994 -6.879 15.683 hybrid contribution 0.281 -0.471 0.397 0.676 sum -5.179 12.523 -6.483 15.022 Atomic orbital electron populations 1.21892 0.90798 1.03393 1.03284 1.20233 0.95922 0.89550 0.87829 1.19588 1.00200 0.94194 0.93337 1.21690 0.94223 0.94039 0.99351 1.21160 0.99427 0.95005 0.97604 1.21090 0.99153 0.99938 0.91040 1.21579 1.08102 0.96341 0.91423 1.96656 1.94658 1.78485 1.27891 1.20741 0.97955 0.92520 0.98249 1.45646 1.57165 1.29867 1.07641 1.16410 0.79621 0.81926 0.83719 1.90824 1.49400 1.42314 1.61844 1.41771 1.41363 1.26019 1.04255 1.19332 1.37163 0.90466 1.00911 0.87869 1.25320 0.94217 0.96967 0.98761 1.69911 1.35364 1.17008 1.23408 0.85945 0.78878 0.80246 0.79244 1.19643 1.20739 1.19500 1.19819 0.80073 0.82955 0.88317 1.90549 1.57045 1.69125 1.16200 0.91375 0.91155 0.90294 0.82866 0.84986 0.85308 0.85440 0.73633 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.97 37.16 0.33 -1.58 16 2 C 0.16 2.82 1.16 -133.25 -0.16 2.66 16 3 C -0.07 -1.19 4.87 -104.63 -0.51 -1.70 16 4 C -0.07 -1.26 9.18 -39.58 -0.36 -1.63 16 5 C -0.11 -1.60 10.05 -39.59 -0.40 -1.99 16 6 C -0.09 -1.22 9.79 -39.55 -0.39 -1.60 16 7 C -0.10 -1.32 6.22 -39.52 -0.25 -1.57 16 8 Br -0.06 -0.74 33.70 -68.01 -2.29 -3.04 16 9 C -0.07 -1.11 9.09 -39.56 -0.36 -1.47 16 10 N -0.74 -13.50 5.29 -54.03 -0.29 -13.79 16 11 C 0.68 16.31 8.57 -88.02 -0.75 15.56 16 12 O -0.57 -15.14 17.62 5.34 0.09 -15.05 16 13 N -0.40 -10.43 2.69 -65.56 -0.18 -10.61 16 14 C -0.35 -9.82 9.46 -14.76 -0.14 -9.96 16 15 H 0.10 2.86 7.91 -52.49 -0.41 2.44 16 16 C 0.06 1.59 4.82 -17.50 -0.08 1.50 16 17 N -0.82 -22.81 11.20 55.49 0.62 -22.19 16 18 Si 0.93 20.77 29.60 -169.99 -5.03 15.74 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.50 11.79 5.79 -10.55 -0.06 11.73 16 23 O -0.46 -11.57 13.32 5.60 0.07 -11.49 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.15 2.92 5.78 -52.49 -0.30 2.61 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.13 1.69 6.95 -52.49 -0.36 1.32 16 31 H 0.42 6.21 8.10 -40.82 -0.33 5.88 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 300.29 15.07 4.53 4.53 Total: -1.00 -31.77 300.29 -8.26 -40.03 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -2.66 Total: 5.92 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -3.13 Total: 9.95 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.16 Total: -46.58 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: 0.17 Total: -26.54 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.04 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.77 -8.26 -40.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003572813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.503 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds