Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48501 * 109.47085 * 274.99874 * 3 2 1 5 5 H 1.48498 * 109.47459 * 34.99700 * 3 2 1 6 6 H 1.48501 * 109.47226 * 154.99862 * 3 2 1 7 7 C 1.40120 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99739 * 174.96944 * 7 2 1 9 9 C 1.46163 * 120.00155 * 354.96941 * 7 2 1 10 10 O 1.21737 * 120.00461 * 5.02446 * 9 7 2 11 11 N 1.34783 * 119.99776 * 185.03236 * 9 7 2 12 12 C 1.39531 * 119.99985 * 184.60586 * 11 9 7 13 13 C 1.39051 * 120.08272 * 324.88113 * 12 11 9 14 14 C 1.38037 * 119.91949 * 180.02562 * 13 12 11 15 15 C 1.38356 * 120.08303 * 0.02562 * 14 13 12 16 16 C 1.38307 * 120.16232 * 0.02562 * 15 14 13 17 17 S 1.76204 * 119.95449 * 179.97438 * 16 15 14 18 18 O 1.42097 * 106.40532 * 336.46680 * 17 16 15 19 19 O 1.42100 * 106.40545 * 203.54111 * 17 16 15 20 20 N 1.65606 * 107.21660 * 90.00505 * 17 16 15 21 21 C 1.46929 * 120.62936 * 270.02452 * 20 17 16 22 22 C 1.53189 * 108.77384 * 233.58598 * 21 20 17 23 23 C 1.53037 * 109.31173 * 305.36136 * 22 21 20 24 24 C 1.53045 * 109.53811 * 61.36840 * 23 22 21 25 25 C 1.46922 * 120.63264 * 89.99469 * 20 17 16 26 26 C 1.38081 * 120.08917 * 0.25871 * 16 15 14 27 27 H 0.96998 * 119.99773 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99938 * 4.59579 * 11 9 7 29 29 H 1.08005 * 120.04103 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.96181 * 179.97438 * 14 13 12 31 31 H 1.07993 * 119.91671 * 179.97438 * 15 14 13 32 32 H 1.08999 * 109.58900 * 113.79546 * 21 20 17 33 33 H 1.09004 * 109.58548 * 353.37357 * 21 20 17 34 34 H 1.09002 * 109.49714 * 185.41489 * 22 21 20 35 35 H 1.08998 * 109.49813 * 65.31472 * 22 21 20 36 36 H 1.08999 * 109.46507 * 181.38638 * 23 22 21 37 37 H 1.08998 * 109.46303 * 301.34620 * 23 22 21 38 38 H 1.08995 * 109.49578 * 58.58527 * 24 23 22 39 39 H 1.08996 * 109.49566 * 178.68288 * 24 23 22 40 40 H 1.09002 * 109.58317 * 6.63428 * 25 20 17 41 41 H 1.08999 * 109.59273 * 246.20186 * 25 20 17 42 42 H 1.08001 * 120.04150 * 179.70714 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3822 2.1074 -1.3948 5 1 1.4947 2.6199 0.8030 6 1 3.5868 1.4120 0.5917 7 6 2.0070 -1.2135 0.0005 8 1 3.0839 -1.2153 -0.0815 9 6 1.2804 -2.4768 0.1121 10 8 0.0630 -2.4809 0.1124 11 7 1.9582 -3.6373 0.2148 12 6 1.2680 -4.8499 0.2245 13 6 0.0225 -4.9380 0.8364 14 6 -0.6572 -6.1395 0.8444 15 6 -0.1003 -7.2553 0.2451 16 6 1.1388 -7.1717 -0.3636 17 16 1.8431 -8.5963 -1.1246 18 8 1.2390 -9.7229 -0.5040 19 8 3.2479 -8.3839 -1.1513 20 7 1.3419 -8.6073 -2.7029 21 6 0.0988 -9.2890 -3.0889 22 6 0.4077 -10.2737 -4.2210 23 6 1.0973 -9.5284 -5.3660 24 6 2.4174 -8.9348 -4.8686 25 6 2.1313 -7.9349 -3.7438 26 6 1.8273 -5.9748 -0.3706 27 1 -0.4850 0.8400 0.0004 28 1 2.9259 -3.6294 0.2819 29 1 -0.4127 -4.0676 1.3048 30 1 -1.6244 -6.2088 1.3198 31 1 -0.6342 -8.1940 0.2533 32 1 -0.6295 -8.5543 -3.4321 33 1 -0.3018 -9.8311 -2.2322 34 1 -0.5209 -10.7159 -4.5820 35 1 1.0655 -11.0597 -3.8502 36 1 1.2961 -10.2218 -6.1831 37 1 0.4492 -8.7266 -5.7199 38 1 3.0562 -9.7334 -4.4917 39 1 2.9191 -8.4241 -5.6905 40 1 3.0718 -7.5836 -3.3192 41 1 1.5687 -7.0898 -4.1405 42 1 2.7969 -5.9116 -0.8419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003885191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = -91.469800 kcal Electronic energy + Delta-G solvation = -27196.196432 eV Core-core repulsion = 23267.665906 eV Total energy + Delta-G solvation = -3928.530526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.36603 -38.57216 -37.24902 -37.07950 -35.78843 -33.62700 -32.63625 -32.58069 -31.26948 -30.81990 -29.21383 -26.35369 -24.69756 -23.51079 -23.03797 -22.25216 -20.67952 -20.33431 -18.72585 -17.80257 -17.72490 -17.31674 -16.05250 -15.86537 -15.51081 -15.20127 -14.88729 -14.75111 -14.54260 -14.35249 -14.08315 -13.83817 -13.77211 -13.51371 -13.03650 -12.67972 -12.60150 -12.25751 -12.06320 -12.04528 -11.94099 -11.88472 -11.51132 -11.41733 -11.27821 -11.19964 -11.13703 -10.80350 -10.77072 -10.68184 -10.55107 -10.41779 -9.60054 -9.15309 -9.01258 -8.89339 -7.87436 -7.35308 -6.45915 -4.92719 0.43055 1.24472 1.73180 2.95425 3.00814 3.08864 3.12605 3.73164 3.90550 3.98849 4.26206 4.37103 4.46865 4.51288 4.66133 4.70013 4.94139 5.02922 5.15665 5.17036 5.28928 5.33279 5.49399 5.51409 5.56448 5.59744 5.64501 5.73461 5.82069 5.82532 5.84346 5.99588 6.05254 6.12335 6.13547 6.30478 6.48820 6.78064 6.84224 7.10059 7.20202 7.58679 7.88908 8.04155 8.74954 9.07126 10.24616 10.44726 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.002951 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.871278 B = 9487.577353 C =10105.456796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.543 3.457 10 O -0.562 6.562 11 N -0.700 5.700 12 C 0.173 3.827 13 C -0.074 4.074 14 C -0.122 4.122 15 C -0.067 4.067 16 C -0.656 4.656 17 S 2.696 3.304 18 O -0.962 6.962 19 O -0.960 6.960 20 N -0.998 5.998 21 C 0.117 3.883 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.131 4.131 25 C 0.116 3.884 26 C -0.079 4.079 27 H 0.273 0.727 28 H 0.396 0.604 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -16.268 -7.647 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.350 3.650 10 O -0.445 6.445 11 N -0.343 5.343 12 C 0.074 3.926 13 C -0.095 4.095 14 C -0.142 4.142 15 C -0.088 4.088 16 C -0.745 4.745 17 S 2.789 3.211 18 O -0.952 6.952 19 O -0.951 6.951 20 N -0.836 5.836 21 C -0.009 4.009 22 C -0.171 4.171 23 C -0.157 4.157 24 C -0.171 4.171 25 C -0.009 4.009 26 C -0.102 4.102 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.169 0.831 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.081 -16.640 -7.267 18.190 hybrid contribution 0.435 1.577 0.022 1.636 sum 1.517 -15.063 -7.245 16.784 Atomic orbital electron populations 1.69984 1.07219 1.27952 1.33422 1.25756 0.94723 1.00625 0.92417 0.86240 0.80261 0.80784 0.78899 1.19601 1.20186 1.18629 1.20851 0.94259 0.88970 1.53185 0.90802 1.18422 0.87429 0.82030 0.77135 1.90607 1.13713 1.85544 1.54608 1.44174 1.09923 1.04046 1.76200 1.18029 0.93663 0.86643 0.94312 1.21891 0.94333 0.98119 0.95164 1.21154 1.00056 0.92518 1.00449 1.20618 0.92970 0.98762 0.96412 1.30405 1.07775 1.17607 1.18719 1.01723 0.73448 0.73909 0.71998 1.93538 1.78476 1.48545 1.74689 1.93548 1.28873 1.86674 1.85976 1.57702 1.34429 1.67428 1.24012 1.21478 0.85172 0.95065 0.99149 1.21866 1.01212 0.98127 0.95848 1.21491 0.96743 0.99924 0.97501 1.21867 0.97776 0.99353 0.98061 1.21496 0.95822 0.94867 0.88750 1.20579 0.99919 0.91399 0.98319 0.91639 0.76991 0.83144 0.85575 0.85323 0.91146 0.88838 0.90740 0.91412 0.91836 0.91633 0.91416 0.90655 0.88734 0.91039 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.29 11.84 55.55 0.66 -20.64 16 2 C 0.09 2.26 5.50 -17.35 -0.10 2.16 16 3 Si 0.91 18.94 29.56 -169.99 -5.03 13.92 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.54 -14.18 9.53 -35.70 -0.34 -14.52 16 8 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 9 C 0.54 14.46 7.58 -13.08 -0.10 14.36 16 10 O -0.56 -16.74 12.46 5.16 0.06 -16.68 16 11 N -0.70 -15.20 5.32 -11.20 -0.06 -15.26 16 12 C 0.17 3.53 6.30 -83.77 -0.53 3.00 16 13 C -0.07 -1.50 8.69 -39.35 -0.34 -1.84 16 14 C -0.12 -2.04 10.04 -39.61 -0.40 -2.44 16 15 C -0.07 -1.03 9.52 -39.51 -0.38 -1.41 16 16 C -0.66 -10.43 5.97 -39.61 -0.24 -10.66 16 17 S 2.70 38.17 5.73 -107.50 -0.62 37.55 16 18 O -0.96 -14.99 15.87 -57.17 -0.91 -15.90 16 19 O -0.96 -15.53 15.86 -57.17 -0.91 -16.43 16 20 N -1.00 -11.37 3.29 -113.52 -0.37 -11.74 16 21 C 0.12 1.11 6.48 -3.71 -0.02 1.08 16 22 C -0.13 -1.03 6.08 -26.61 -0.16 -1.19 16 23 C -0.12 -0.88 5.88 -26.69 -0.16 -1.04 16 24 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 25 C 0.12 1.18 6.48 -3.71 -0.02 1.16 16 26 C -0.08 -1.38 9.44 -39.35 -0.37 -1.75 16 27 H 0.27 6.93 8.29 -40.82 -0.34 6.59 16 28 H 0.40 7.38 8.80 -40.82 -0.36 7.02 16 29 H 0.15 3.44 6.22 -52.48 -0.33 3.11 16 30 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.13 1.66 7.61 -52.49 -0.40 1.26 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.88 6.92 -51.93 -0.36 0.52 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.00 6.92 -51.93 -0.36 0.64 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.13 2.08 7.61 -52.49 -0.40 1.68 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -34.25 358.21 -10.64 -44.89 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.55 Total: 9.24 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -3.31 Total: -14.35 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.22 Total: -47.64 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -1.75 Total: -49.01 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 16 Polarization: 38.17 SS G_CDS: -0.62 Total: 37.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.25 -10.64 -44.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003885191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.580 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds