Wall clock time and date at job start Tue Mar 31 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38277 * 119.96344 * 2 1 4 4 C 1.38280 * 120.13894 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.96759 * 180.02562 * 4 3 2 6 6 C 1.38113 * 120.07135 * 0.02562 * 4 3 2 7 7 C 1.38869 * 119.92922 * 359.97438 * 6 4 3 8 8 N 1.39938 * 120.07125 * 179.97438 * 7 6 4 9 9 C 1.34780 * 120.00163 * 326.74089 * 8 7 6 10 10 O 1.21585 * 119.99672 * 354.63566 * 9 8 7 11 11 N 1.34780 * 119.99840 * 174.63700 * 9 8 7 12 12 C 1.46495 * 120.00228 * 359.71980 * 11 9 8 13 13 C 1.50704 * 109.46688 * 90.00128 * 12 11 9 14 14 H 1.07994 * 120.00026 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99975 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00219 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47387 * 90.00001 * 17 15 13 19 19 H 1.48501 * 109.46918 * 210.00112 * 17 15 13 20 20 H 1.48498 * 109.46764 * 329.99915 * 17 15 13 21 21 C 1.46502 * 119.99395 * 180.02562 * 11 9 8 22 22 C 1.50698 * 109.47269 * 90.00057 * 21 11 9 23 23 C 1.38241 * 119.99968 * 269.72358 * 22 21 11 24 24 C 1.38235 * 120.00089 * 179.76536 * 23 22 21 25 25 C 1.38239 * 119.99539 * 0.51032 * 24 23 22 26 26 C 1.38228 * 120.00127 * 359.74221 * 25 24 23 27 27 C 1.38231 * 120.00470 * 0.02562 * 26 25 24 28 28 C 1.38111 * 119.96544 * 180.25228 * 2 1 3 29 29 H 1.09001 * 109.47413 * 89.99950 * 1 2 3 30 30 H 1.09002 * 109.47274 * 209.99558 * 1 2 3 31 31 H 1.09000 * 109.47675 * 330.00202 * 1 2 3 32 32 H 1.07997 * 119.93261 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.46983 * 269.98269 * 5 4 3 34 34 H 1.09003 * 109.46744 * 29.97523 * 5 4 3 35 35 H 1.08995 * 109.47228 * 149.97747 * 5 4 3 36 36 H 1.07998 * 120.03917 * 179.97438 * 6 4 3 37 37 H 0.97001 * 119.99985 * 146.73806 * 8 7 6 38 38 H 1.08994 * 109.47564 * 210.00428 * 12 11 9 39 39 H 1.09000 * 109.47250 * 330.00378 * 12 11 9 40 40 H 0.97001 * 120.00571 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.46479 * 209.99554 * 21 11 9 42 42 H 1.08991 * 109.47320 * 329.99539 * 21 11 9 43 43 H 1.08003 * 119.99453 * 0.02562 * 23 22 21 44 44 H 1.07994 * 119.99744 * 180.22831 * 24 23 22 45 45 H 1.08003 * 119.99864 * 179.72697 * 25 24 23 46 46 H 1.08002 * 119.99859 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00135 * 179.97438 * 27 26 25 48 48 H 1.08006 * 120.03321 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2022 0.0005 5 6 4.3292 2.5100 0.0011 6 6 4.2761 0.0091 0.0005 7 6 3.5855 -1.1957 0.0005 8 7 4.2874 -2.4063 0.0000 9 6 5.4695 -2.4996 -0.6406 10 8 5.8797 -1.5634 -1.2991 11 7 6.1969 -3.6308 -0.5513 12 6 5.7056 -4.7565 0.2471 13 6 4.8704 -5.6615 -0.6215 14 1 4.7209 -5.4223 -1.6640 15 6 4.2979 -6.7955 -0.0855 16 7 4.4803 -7.0872 1.1838 17 14 3.2631 -7.9177 -1.1623 18 1 4.1329 -8.9501 -1.7809 19 1 2.2234 -8.5785 -0.3331 20 1 2.6105 -7.1165 -2.2287 21 6 7.4822 -3.7319 -1.2472 22 6 8.5844 -3.2507 -0.3391 23 6 8.9540 -1.9186 -0.3466 24 6 9.9617 -1.4762 0.4898 25 6 10.6070 -2.3679 1.3261 26 6 10.2410 -3.7008 1.3298 27 6 9.2300 -4.1423 0.4969 28 6 2.1968 -1.1965 -0.0053 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6560 2.1322 -0.0004 33 1 4.5104 2.8254 -1.0265 34 1 3.7369 3.2675 0.5145 35 1 5.2817 2.3832 0.5156 36 1 5.3561 0.0130 0.0005 37 1 3.9232 -3.1783 0.4607 38 1 6.5518 -5.3156 0.6463 39 1 5.0979 -4.3805 1.0701 40 1 4.0779 -7.8852 1.5609 41 1 7.6655 -4.7706 -1.5222 42 1 7.4577 -3.1168 -2.1466 43 1 8.4525 -1.2228 -1.0030 44 1 10.2479 -0.4348 0.4865 45 1 11.3973 -2.0231 1.9765 46 1 10.7454 -4.3975 1.9830 47 1 8.9443 -5.1839 0.4996 48 1 1.6568 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004325149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:35 Heat of formation + Delta-G solvation = 13.329437 kcal Electronic energy + Delta-G solvation = -29022.854511 eV Core-core repulsion = 25235.090658 eV Total energy + Delta-G solvation = -3787.763853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.26831 -39.11053 -38.33928 -35.30161 -34.51530 -33.29625 -32.80478 -31.40395 -30.58359 -29.72227 -27.49844 -27.07682 -26.48202 -25.54398 -23.20122 -22.20373 -21.94259 -20.80944 -20.71056 -19.02113 -17.51245 -16.88562 -16.37000 -16.22384 -15.88581 -15.32355 -14.96777 -14.79132 -14.63376 -14.54553 -14.09839 -13.85924 -13.30307 -13.20655 -13.10687 -13.07668 -12.87044 -12.62563 -12.42648 -12.39602 -12.24702 -11.90580 -11.74957 -11.52598 -11.41655 -11.24921 -11.09587 -10.92232 -10.84680 -10.81384 -10.58925 -10.26201 -9.85451 -9.71685 -9.40568 -8.66950 -8.61025 -8.48061 -8.26695 -7.92599 -7.49471 -6.26576 -4.35716 1.58153 1.65129 1.70558 1.71120 3.17752 3.25573 3.27885 3.34838 3.69870 4.09574 4.19025 4.26640 4.69212 4.96240 5.04083 5.06257 5.16161 5.16913 5.27756 5.38998 5.43493 5.46210 5.48484 5.65384 5.66727 5.69202 5.74434 5.82291 5.83781 5.94144 5.96072 5.97516 6.17939 6.20692 6.32388 6.33932 6.38052 6.61503 6.71771 6.73593 6.75096 6.77191 6.89295 6.99064 7.00764 7.05239 7.30282 7.32086 7.50231 7.68437 7.72560 7.94866 8.49872 8.76533 9.20623 9.34549 10.79291 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.006585 B = 0.005055 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4251.115729 B = 5537.282238 C = 9216.129481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.066 4.066 3 C -0.152 4.152 4 C -0.069 4.069 5 C -0.109 4.109 6 C -0.130 4.130 7 C 0.193 3.807 8 N -0.683 5.683 9 C 0.711 3.289 10 O -0.601 6.601 11 N -0.603 5.603 12 C 0.239 3.761 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.174 3.826 22 C -0.096 4.096 23 C -0.097 4.097 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.101 4.101 28 C -0.160 4.160 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.134 0.866 37 H 0.419 0.581 38 H 0.041 0.959 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.124 0.876 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 12.211 0.629 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.067 4.067 3 C -0.171 4.171 4 C -0.069 4.069 5 C -0.166 4.166 6 C -0.150 4.150 7 C 0.096 3.904 8 N -0.331 5.331 9 C 0.413 3.587 10 O -0.482 6.482 11 N -0.336 5.336 12 C 0.119 3.881 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.724 3.276 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.050 3.950 22 C -0.097 4.097 23 C -0.115 4.115 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.119 4.119 28 C -0.181 4.181 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.152 0.848 37 H 0.258 0.742 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.142 0.858 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.327 12.607 0.310 12.824 hybrid contribution -0.764 -1.375 -0.160 1.581 sum 1.563 11.232 0.150 11.341 Atomic orbital electron populations 1.20749 0.91394 1.02461 1.02106 1.19557 0.95568 0.92495 0.99080 1.20709 0.93400 0.97097 1.05888 1.19694 0.93535 0.94832 0.98884 1.20732 0.99781 0.93945 1.02103 1.21041 1.00862 0.90267 1.02865 1.17562 0.90437 0.85534 0.96874 1.42917 1.21327 1.12766 1.56088 1.15774 0.80099 0.83297 0.79536 1.90805 1.72216 1.38811 1.46362 1.47380 1.18966 1.14879 1.52363 1.19370 0.95441 0.83056 0.90246 1.21536 1.31748 1.07842 0.97072 0.91920 1.24948 0.96216 0.97457 0.95046 1.69923 1.44182 1.26546 1.12051 0.86503 0.80006 0.80702 0.80351 1.20442 1.21041 1.19753 1.20107 0.79878 1.01866 0.93145 1.20451 0.96984 0.93879 0.98417 1.21230 0.96189 0.95479 0.98627 1.21098 0.97278 0.99238 0.97224 1.21074 1.00158 0.93761 0.99401 1.21092 0.98165 0.95801 0.99526 1.21192 0.95430 0.99995 0.95321 1.20764 0.92262 0.98304 1.06781 0.91394 0.91599 0.91808 0.86689 0.91365 0.91923 0.91717 0.84776 0.74160 0.94110 0.95220 0.92407 0.89415 0.89923 0.85542 0.86640 0.86732 0.86446 0.85765 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.07 -0.93 5.88 -104.65 -0.62 -1.54 16 3 C -0.15 -2.07 9.35 -39.55 -0.37 -2.44 16 4 C -0.07 -1.01 5.88 -104.65 -0.62 -1.63 16 5 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 6 C -0.13 -2.27 8.31 -39.39 -0.33 -2.60 16 7 C 0.19 3.51 6.28 -83.69 -0.53 2.99 16 8 N -0.68 -13.50 5.17 -14.22 -0.07 -13.57 16 9 C 0.71 15.02 8.01 -86.91 -0.70 14.32 16 10 O -0.60 -13.26 13.16 5.29 0.07 -13.19 16 11 N -0.60 -12.48 2.44 -182.19 -0.44 -12.92 16 12 C 0.24 5.47 4.88 -5.19 -0.03 5.44 16 13 C -0.54 -13.60 9.39 -34.44 -0.32 -13.92 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.64 13.29 55.43 0.74 -22.91 16 17 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 21 C 0.17 3.18 5.53 -5.19 -0.03 3.15 16 22 C -0.10 -1.62 5.46 -104.62 -0.57 -2.19 16 23 C -0.10 -1.56 9.70 -39.58 -0.38 -1.94 16 24 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 26 C -0.13 -1.80 10.05 -39.59 -0.40 -2.20 16 27 C -0.10 -1.61 9.70 -39.58 -0.38 -1.99 16 28 C -0.16 -2.58 9.62 -39.40 -0.38 -2.96 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.13 2.53 6.41 -52.49 -0.34 2.20 16 37 H 0.42 8.36 6.64 -40.82 -0.27 8.09 16 38 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 39 H 0.03 0.71 6.46 -51.93 -0.34 0.38 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.09 1.56 8.02 -51.93 -0.42 1.14 16 42 H 0.08 1.51 7.36 -51.93 -0.38 1.12 16 43 H 0.13 2.11 7.60 -52.48 -0.40 1.71 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.12 1.97 8.06 -52.48 -0.42 1.54 16 48 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 402.16 15.07 6.06 6.06 Total: -1.00 -28.36 402.16 -11.65 -40.01 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.17 Total: 13.38 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -5.81 Total: -11.92 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.22 Total: -49.40 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.07 Total: -13.19 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.36 -11.65 -40.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004325149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.341 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds