Wall clock time and date at job start Tue Mar 31 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38277 * 119.96344 * 2 1 4 4 C 1.38280 * 120.13894 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.96759 * 180.02562 * 4 3 2 6 6 C 1.38113 * 120.07135 * 0.02562 * 4 3 2 7 7 C 1.38869 * 119.92922 * 359.97438 * 6 4 3 8 8 N 1.39938 * 120.07125 * 179.97438 * 7 6 4 9 9 C 1.34780 * 120.00163 * 326.74089 * 8 7 6 10 10 O 1.21585 * 119.99672 * 354.63566 * 9 8 7 11 11 N 1.34780 * 119.99840 * 174.63700 * 9 8 7 12 12 C 1.46495 * 120.00228 * 359.71980 * 11 9 8 13 13 C 1.50704 * 109.46688 * 90.00128 * 12 11 9 14 14 H 1.07994 * 120.00026 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99975 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00219 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47387 * 90.00001 * 17 15 13 19 19 H 1.48501 * 109.46918 * 210.00112 * 17 15 13 20 20 H 1.48498 * 109.46764 * 329.99915 * 17 15 13 21 21 C 1.46502 * 119.99395 * 180.02562 * 11 9 8 22 22 C 1.50698 * 109.47269 * 90.00057 * 21 11 9 23 23 C 1.38241 * 119.99968 * 269.72358 * 22 21 11 24 24 C 1.38235 * 120.00089 * 179.76536 * 23 22 21 25 25 C 1.38239 * 119.99539 * 0.51032 * 24 23 22 26 26 C 1.38228 * 120.00127 * 359.74221 * 25 24 23 27 27 C 1.38231 * 120.00470 * 0.02562 * 26 25 24 28 28 C 1.38111 * 119.96544 * 180.25228 * 2 1 3 29 29 H 1.09001 * 109.47413 * 89.99950 * 1 2 3 30 30 H 1.09002 * 109.47274 * 209.99558 * 1 2 3 31 31 H 1.09000 * 109.47675 * 330.00202 * 1 2 3 32 32 H 1.07997 * 119.93261 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.46983 * 269.98269 * 5 4 3 34 34 H 1.09003 * 109.46744 * 29.97523 * 5 4 3 35 35 H 1.08995 * 109.47228 * 149.97747 * 5 4 3 36 36 H 1.07998 * 120.03917 * 179.97438 * 6 4 3 37 37 H 0.97001 * 119.99985 * 146.73806 * 8 7 6 38 38 H 1.08994 * 109.47564 * 210.00428 * 12 11 9 39 39 H 1.09000 * 109.47250 * 330.00378 * 12 11 9 40 40 H 0.97001 * 120.00571 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.46479 * 209.99554 * 21 11 9 42 42 H 1.08991 * 109.47320 * 329.99539 * 21 11 9 43 43 H 1.08003 * 119.99453 * 0.02562 * 23 22 21 44 44 H 1.07994 * 119.99744 * 180.22831 * 24 23 22 45 45 H 1.08003 * 119.99864 * 179.72697 * 25 24 23 46 46 H 1.08002 * 119.99859 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00135 * 179.97438 * 27 26 25 48 48 H 1.08006 * 120.03321 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2022 0.0005 5 6 4.3292 2.5100 0.0011 6 6 4.2761 0.0091 0.0005 7 6 3.5855 -1.1957 0.0005 8 7 4.2874 -2.4063 0.0000 9 6 5.4695 -2.4996 -0.6406 10 8 5.8797 -1.5634 -1.2991 11 7 6.1969 -3.6308 -0.5513 12 6 5.7056 -4.7565 0.2471 13 6 4.8704 -5.6615 -0.6215 14 1 4.7209 -5.4223 -1.6640 15 6 4.2979 -6.7955 -0.0855 16 7 4.4803 -7.0872 1.1838 17 14 3.2631 -7.9177 -1.1623 18 1 4.1329 -8.9501 -1.7809 19 1 2.2234 -8.5785 -0.3331 20 1 2.6105 -7.1165 -2.2287 21 6 7.4822 -3.7319 -1.2472 22 6 8.5844 -3.2507 -0.3391 23 6 8.9540 -1.9186 -0.3466 24 6 9.9617 -1.4762 0.4898 25 6 10.6070 -2.3679 1.3261 26 6 10.2410 -3.7008 1.3298 27 6 9.2300 -4.1423 0.4969 28 6 2.1968 -1.1965 -0.0053 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6560 2.1322 -0.0004 33 1 4.5104 2.8254 -1.0265 34 1 3.7369 3.2675 0.5145 35 1 5.2817 2.3832 0.5156 36 1 5.3561 0.0130 0.0005 37 1 3.9232 -3.1783 0.4607 38 1 6.5518 -5.3156 0.6463 39 1 5.0979 -4.3805 1.0701 40 1 4.0779 -7.8852 1.5609 41 1 7.6655 -4.7706 -1.5222 42 1 7.4577 -3.1168 -2.1466 43 1 8.4525 -1.2228 -1.0030 44 1 10.2479 -0.4348 0.4865 45 1 11.3973 -2.0231 1.9765 46 1 10.7454 -4.3975 1.9830 47 1 8.9443 -5.1839 0.4996 48 1 1.6568 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004325149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:34 Heat of formation + Delta-G solvation = 2.140312 kcal Electronic energy + Delta-G solvation = -29023.339707 eV Core-core repulsion = 25235.090658 eV Total energy + Delta-G solvation = -3788.249050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.77110 -40.35255 -39.63260 -36.91813 -36.03248 -34.69600 -34.34993 -32.76951 -31.76201 -31.00116 -29.32511 -28.07898 -27.59194 -26.99703 -25.05421 -23.41353 -23.27515 -22.07100 -21.89419 -20.52044 -19.08537 -18.69918 -17.88166 -17.61379 -17.12380 -16.66476 -16.50434 -16.28996 -16.07480 -15.88030 -15.50674 -15.01069 -14.72530 -14.47288 -14.32835 -14.25891 -14.00155 -13.96932 -13.84421 -13.60487 -13.44483 -13.28440 -13.11071 -12.92486 -12.78686 -12.64956 -12.60374 -12.37644 -12.18713 -12.15892 -11.96017 -11.81345 -11.71700 -11.18779 -10.94003 -10.64448 -9.79949 -9.73591 -9.56122 -9.44999 -8.89795 -8.24170 -6.40530 0.35761 0.43855 0.48392 0.52226 1.38709 1.41470 1.50506 1.82344 2.14129 2.37490 2.84989 2.89625 3.05287 3.13763 3.89857 3.93239 3.94944 3.95222 4.17841 4.26511 4.30175 4.31905 4.41231 4.48560 4.53167 4.61064 4.72216 4.72886 4.76831 4.82185 4.83594 4.89234 4.91968 4.99542 5.10236 5.11422 5.13220 5.17914 5.27584 5.42437 5.53344 5.58173 5.59003 5.61375 5.70804 5.73162 5.74973 5.80792 5.98358 6.10020 6.13888 6.21794 6.63348 6.94032 7.32076 7.57537 8.80396 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.006585 B = 0.005055 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4251.115729 B = 5537.282238 C = 9216.129481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.070 4.070 5 C -0.107 4.107 6 C -0.152 4.152 7 C 0.161 3.839 8 N -0.684 5.684 9 C 0.705 3.295 10 O -0.615 6.615 11 N -0.605 5.605 12 C 0.257 3.743 13 C -0.550 4.550 14 H 0.050 0.950 15 C 0.028 3.972 16 N -0.915 5.915 17 Si 0.956 3.044 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.275 1.275 21 C 0.174 3.826 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.174 4.174 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.414 0.586 38 H 0.028 0.972 39 H 0.018 0.982 40 H 0.269 0.731 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.142 0.858 45 H 0.151 0.849 46 H 0.143 0.857 47 H 0.117 0.883 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 13.925 1.164 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.064 4.064 3 C -0.165 4.165 4 C -0.071 4.071 5 C -0.164 4.164 6 C -0.172 4.172 7 C 0.065 3.935 8 N -0.332 5.332 9 C 0.407 3.593 10 O -0.497 6.497 11 N -0.338 5.338 12 C 0.136 3.864 13 C -0.588 4.588 14 H 0.069 0.931 15 C -0.173 4.173 16 N -0.554 5.554 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.200 1.200 21 C 0.051 3.949 22 C -0.114 4.114 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.135 4.135 28 C -0.194 4.194 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.169 0.831 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.252 0.748 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.159 0.841 45 H 0.169 0.831 46 H 0.161 0.839 47 H 0.135 0.865 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.718 14.343 0.841 14.470 hybrid contribution -0.572 -1.803 -0.303 1.915 sum 1.146 12.540 0.538 12.604 Atomic orbital electron populations 1.20823 0.88630 1.03860 1.03188 1.20012 0.97543 0.91731 0.97123 1.21144 0.92959 0.98411 1.03942 1.20090 0.94498 0.95034 0.97469 1.20792 0.99780 0.92853 1.02927 1.20993 0.99919 0.91412 1.04926 1.17898 0.91427 0.85069 0.99090 1.42908 1.21037 1.13364 1.55880 1.15919 0.80528 0.83161 0.79675 1.90776 1.72687 1.39126 1.47105 1.47374 1.19822 1.14244 1.52318 1.18987 0.94364 0.83164 0.89844 1.21641 1.32128 1.08425 0.96627 0.93144 1.25598 0.97097 0.98584 0.96069 1.70005 1.45009 1.27099 1.13268 0.85580 0.78621 0.78897 0.78720 1.19954 1.20411 1.19960 1.20146 0.79664 1.01718 0.93329 1.20311 0.97203 0.94659 0.99203 1.21208 0.97362 0.94875 0.99566 1.21416 0.96191 1.00823 0.96299 1.21490 1.00211 0.93069 0.98881 1.21425 0.97261 0.96933 0.98936 1.21248 0.96538 0.99607 0.96149 1.20930 0.91466 0.99570 1.07482 0.90300 0.91294 0.89407 0.83057 0.90623 0.89120 0.92034 0.87140 0.74771 0.95427 0.96437 0.92173 0.89572 0.90499 0.86977 0.84067 0.83107 0.83895 0.86488 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.01 71.24 0.71 -1.28 16 2 C -0.06 -1.67 5.88 -19.88 -0.12 -1.78 16 3 C -0.15 -3.59 9.35 22.29 0.21 -3.38 16 4 C -0.07 -2.00 5.88 -19.88 -0.12 -2.11 16 5 C -0.11 -2.26 10.01 71.24 0.71 -1.55 16 6 C -0.15 -5.51 8.31 22.39 0.19 -5.32 16 7 C 0.16 6.12 6.28 38.15 0.24 6.36 16 8 N -0.68 -28.83 5.17 -317.18 -1.64 -30.47 16 9 C 0.70 31.72 8.01 179.05 1.44 33.15 16 10 O -0.62 -28.82 13.16 -3.98 -0.05 -28.88 16 11 N -0.60 -26.64 2.44 -848.58 -2.07 -28.71 16 12 C 0.26 12.43 4.88 85.64 0.42 12.85 16 13 C -0.55 -28.50 9.39 25.60 0.24 -28.26 16 14 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 15 C 0.03 1.43 5.46 84.65 0.46 1.90 16 16 N -0.92 -49.48 13.29 21.45 0.28 -49.20 16 17 Si 0.96 41.58 29.54 68.60 2.03 43.61 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.17 6.83 5.53 85.63 0.47 7.30 16 22 C -0.11 -3.99 5.46 -19.86 -0.11 -4.10 16 23 C -0.11 -3.70 9.70 22.27 0.22 -3.49 16 24 C -0.13 -3.49 10.05 22.27 0.22 -3.26 16 25 C -0.12 -2.88 10.05 22.27 0.22 -2.65 16 26 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 27 C -0.12 -3.82 9.70 22.27 0.22 -3.60 16 28 C -0.17 -5.68 9.62 22.39 0.22 -5.46 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 31 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.09 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 36 H 0.11 4.46 6.41 -2.91 -0.02 4.45 16 37 H 0.41 17.72 6.64 -92.71 -0.62 17.11 16 38 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 39 H 0.02 0.90 6.46 -2.39 -0.02 0.88 16 40 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.09 3.29 8.02 -2.39 -0.02 3.27 16 42 H 0.08 3.03 7.36 -2.39 -0.02 3.01 16 43 H 0.11 3.98 7.60 -2.91 -0.02 3.96 16 44 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 45 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 46 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 47 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 48 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -63.17 402.16 4.96 -58.21 By element: Atomic # 1 Polarization: 42.99 SS G_CDS: 0.34 Total: 43.33 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 6.07 Total: -7.89 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -3.43 Total: -108.38 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.05 Total: -28.88 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -63.17 4.96 -58.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004325149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.352 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds