Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47196 * 2 1 4 4 N 1.46506 * 109.47151 * 120.00248 * 2 1 3 5 5 C 1.36046 * 126.63774 * 299.97180 * 4 2 1 6 6 S 1.76199 * 125.32168 * 359.97438 * 5 4 2 7 7 C 1.81000 * 99.99871 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47042 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99856 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99887 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99921 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00182 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47274 * 90.00212 * 12 10 8 14 14 H 1.48499 * 109.47131 * 210.00396 * 12 10 8 15 15 H 1.48504 * 109.47283 * 330.00399 * 12 10 8 16 16 N 1.31842 * 109.35962 * 180.26661 * 5 4 2 17 17 C 1.33357 * 109.97908 * 359.59270 * 16 5 4 18 18 C 1.38876 * 126.64692 * 119.99930 * 4 2 1 19 19 C 1.40571 * 134.40742 * 359.95271 * 18 4 2 20 20 O 1.21883 * 120.34646 * 0.04438 * 19 18 4 21 21 N 1.34903 * 119.30470 * 180.02562 * 19 18 4 22 22 C 1.46505 * 119.49663 * 179.97438 * 21 19 18 23 23 C 1.34414 * 121.00877 * 0.02562 * 21 19 18 24 24 O 1.21596 * 119.19579 * 179.97438 * 23 21 19 25 25 N 1.34640 * 121.61417 * 359.97438 * 23 21 19 26 26 C 1.46503 * 119.97592 * 179.97438 * 25 23 21 27 27 H 1.09003 * 109.46963 * 299.99986 * 1 2 3 28 28 H 1.08995 * 109.47517 * 59.99973 * 1 2 3 29 29 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46511 * 239.99730 * 2 1 3 31 31 H 1.09002 * 109.46974 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47034 * 299.99518 * 3 2 1 33 33 H 1.09003 * 109.47153 * 60.00131 * 3 2 1 34 34 H 1.09000 * 109.47385 * 299.99958 * 7 6 5 35 35 H 1.09005 * 109.47046 * 60.00120 * 7 6 5 36 36 H 0.96995 * 120.00270 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.46800 * 89.99350 * 22 21 19 38 38 H 1.08999 * 109.47220 * 209.99393 * 22 21 19 39 39 H 1.08998 * 109.47043 * 329.99617 * 22 21 19 40 40 H 1.08993 * 109.46662 * 0.02562 * 26 25 23 41 41 H 1.08992 * 109.46970 * 120.00269 * 26 25 23 42 42 H 1.08999 * 109.47016 * 240.00501 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.7748 -0.3454 2.4894 6 16 0.8043 1.0296 3.0112 7 6 0.9352 0.8432 4.8068 8 6 0.1582 1.9428 5.4839 9 1 -0.3620 2.6804 4.8909 10 6 0.1125 2.0077 6.8603 11 7 -0.5652 2.9675 7.4512 12 14 1.0129 0.7322 7.8860 13 1 2.3952 1.2017 8.1578 14 1 0.2956 0.5343 9.1711 15 1 1.0636 -0.5534 7.1444 16 7 2.3836 -1.1967 3.2911 17 6 3.0279 -2.1176 2.5734 18 6 2.8199 -1.8243 1.2296 19 6 3.4010 -2.6474 0.2494 20 8 3.2322 -2.4090 -0.9339 21 7 4.1476 -3.7038 0.6322 22 6 4.7547 -4.5648 -0.3859 23 6 4.3423 -3.9790 1.9334 24 8 5.0208 -4.9399 2.2413 25 7 3.8043 -3.2169 2.9041 26 6 4.0393 -3.5502 4.3113 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.5282 -0.1238 5.1024 35 1 1.9826 0.9025 5.1028 36 1 -0.5977 3.0130 8.4195 37 1 5.7446 -4.1853 -0.6394 38 1 4.8430 -5.5796 0.0021 39 1 4.1282 -4.5700 -1.2778 40 1 4.6670 -4.4390 4.3741 41 1 4.5401 -2.7166 4.8033 42 1 3.0858 -3.7429 4.8031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004540795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = 17.228956 kcal Electronic energy + Delta-G solvation = -27833.920211 eV Core-core repulsion = 23942.395968 eV Total energy + Delta-G solvation = -3891.524243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.95510 -41.07024 -39.15904 -36.91669 -35.58977 -35.22856 -33.19853 -31.55744 -30.12390 -29.54859 -27.93036 -27.40991 -26.85593 -24.33462 -23.43392 -22.97350 -22.54156 -20.91273 -19.00547 -18.58572 -17.43255 -17.20646 -17.12929 -16.61628 -15.87731 -15.63704 -15.52738 -15.43481 -14.98702 -14.50994 -14.34631 -14.09047 -13.67993 -13.63284 -13.36253 -13.07518 -12.74823 -12.71335 -12.54284 -12.49726 -12.34631 -12.29610 -11.64023 -11.59465 -11.23586 -11.05408 -10.92003 -10.74634 -10.58847 -10.22556 -10.12274 -10.04487 -9.94806 -9.74622 -9.43352 -8.84131 -8.53496 -7.12519 -6.31805 -4.37759 0.79287 1.38221 1.60099 1.85255 2.50466 2.63110 2.72064 3.01124 3.19087 3.27915 3.31235 3.36266 4.03811 4.23138 4.34119 4.50610 4.76459 4.97565 4.99140 5.01415 5.05787 5.11740 5.20356 5.31378 5.33467 5.41448 5.43876 5.44561 5.56331 5.64831 5.64873 5.79439 5.93679 6.05925 6.13568 6.40204 6.54760 6.58228 6.69762 7.05647 7.23224 7.31213 7.46072 7.79876 8.09552 8.63854 9.23092 10.79171 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.004274 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.009414 B = 6549.193331 C = 8492.539460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 C -0.172 4.172 4 N -0.399 5.399 5 C 0.278 3.722 6 S 0.014 5.986 7 C 0.024 3.976 8 C -0.529 4.529 9 H 0.084 0.916 10 C 0.088 3.912 11 N -0.886 5.886 12 Si 0.875 3.125 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.258 1.258 16 N -0.497 5.497 17 C 0.328 3.672 18 C -0.164 4.164 19 C 0.597 3.403 20 O -0.523 6.523 21 N -0.554 5.554 22 C 0.087 3.913 23 C 0.709 3.291 24 O -0.545 6.545 25 N -0.509 5.509 26 C 0.086 3.914 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.270 0.730 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -10.351 -14.188 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.024 3.976 3 C -0.230 4.230 4 N -0.085 5.085 5 C -0.091 4.091 6 S 0.247 5.753 7 C -0.124 4.124 8 C -0.568 4.568 9 H 0.102 0.898 10 C -0.118 4.118 11 N -0.522 5.522 12 Si 0.701 3.299 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.183 1.183 16 N -0.224 5.224 17 C 0.092 3.908 18 C -0.282 4.282 19 C 0.393 3.607 20 O -0.401 6.401 21 N -0.298 5.298 22 C -0.054 4.054 23 C 0.412 3.588 24 O -0.418 6.418 25 N -0.236 5.236 26 C -0.055 4.055 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.743 -9.782 -14.404 18.672 hybrid contribution 1.108 -1.493 0.709 1.989 sum 7.851 -11.275 -13.696 19.399 Atomic orbital electron populations 1.22294 0.92561 1.03529 1.04631 1.21816 0.96064 0.94252 0.85510 1.22294 1.02132 0.93960 1.04628 1.45183 1.36808 1.19868 1.06649 1.26331 1.00579 1.01254 0.80932 1.85766 1.55787 1.21921 1.11805 1.21814 1.01776 1.02318 0.86529 1.20351 1.33144 1.11446 0.91892 0.89791 1.24772 0.94495 0.95404 0.97135 1.69843 1.40196 1.31791 1.10380 0.86825 0.80260 0.82735 0.80086 1.19698 1.20796 1.18264 1.70226 1.15907 1.05130 1.31126 1.18182 0.93981 0.89658 0.88942 1.18645 1.14985 1.00189 0.94420 1.15243 0.77963 0.79606 0.87851 1.90850 1.60570 1.70952 1.17751 1.45761 1.48463 1.28516 1.07036 1.21889 0.98748 0.94520 0.90231 1.15408 0.80612 0.82692 0.80093 1.90989 1.42008 1.28252 1.80600 1.43805 1.47076 1.24000 1.08730 1.22007 1.03726 1.03373 0.76385 0.89844 0.89880 0.91810 0.86491 0.91813 0.89883 0.89838 0.92767 0.93229 0.91952 0.90837 0.88807 0.88893 0.88112 0.90232 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.22 37.16 0.34 -1.57 16 2 C 0.12 1.56 3.46 -67.93 -0.24 1.33 16 3 C -0.17 -1.92 9.22 37.15 0.34 -1.58 16 4 N -0.40 -6.19 2.69 -106.95 -0.29 -6.48 16 5 C 0.28 4.85 7.46 -88.33 -0.66 4.19 16 6 S 0.01 0.25 17.60 -107.50 -1.89 -1.64 16 7 C 0.02 0.53 3.99 36.01 0.14 0.67 16 8 C -0.53 -13.77 9.68 -34.44 -0.33 -14.10 16 9 H 0.08 2.34 7.95 -52.49 -0.42 1.92 16 10 C 0.09 2.36 5.47 -17.82 -0.10 2.27 16 11 N -0.89 -25.24 13.96 55.43 0.77 -24.47 16 12 Si 0.88 20.04 27.47 -169.99 -4.67 15.37 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 16 N -0.50 -9.08 10.49 -12.05 -0.13 -9.21 16 17 C 0.33 5.43 7.68 -154.62 -1.19 4.25 16 18 C -0.16 -2.63 6.91 -83.47 -0.58 -3.21 16 19 C 0.60 8.99 7.42 -15.32 -0.11 8.87 16 20 O -0.52 -8.27 15.09 5.02 0.08 -8.19 16 21 N -0.55 -7.41 2.96 -131.81 -0.39 -7.80 16 22 C 0.09 0.85 10.09 59.85 0.60 1.45 16 23 C 0.71 10.17 8.12 -87.37 -0.71 9.46 16 24 O -0.54 -8.21 15.02 5.28 0.08 -8.13 16 25 N -0.51 -7.44 3.06 -128.30 -0.39 -7.83 16 26 C 0.09 1.04 10.63 59.85 0.64 1.67 16 27 H 0.08 1.04 5.85 -51.93 -0.30 0.73 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.12 1.48 6.49 -51.93 -0.34 1.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.04 5.84 -51.93 -0.30 0.74 16 34 H 0.05 1.23 7.20 -51.92 -0.37 0.86 16 35 H 0.05 1.11 7.57 -51.91 -0.39 0.72 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.83 7.34 -51.93 -0.38 0.45 16 39 H 0.09 0.84 7.40 -51.93 -0.38 0.45 16 40 H 0.10 1.09 6.85 -51.93 -0.36 0.73 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -30.75 356.23 -8.68 -39.43 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.37 Total: -0.12 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: -1.84 Total: 13.70 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.42 Total: -55.79 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.16 Total: -16.32 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -1.89 Total: -1.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.75 -8.68 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004540795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds