Wall clock time and date at job start Tue Mar 31 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47196 * 2 1 4 4 N 1.46506 * 109.47151 * 120.00248 * 2 1 3 5 5 C 1.36046 * 126.63774 * 299.97180 * 4 2 1 6 6 S 1.76199 * 125.32168 * 359.97438 * 5 4 2 7 7 C 1.81000 * 99.99871 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47042 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99856 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99887 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99921 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00182 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47274 * 90.00212 * 12 10 8 14 14 H 1.48499 * 109.47131 * 210.00396 * 12 10 8 15 15 H 1.48504 * 109.47283 * 330.00399 * 12 10 8 16 16 N 1.31842 * 109.35962 * 180.26661 * 5 4 2 17 17 C 1.33357 * 109.97908 * 359.59270 * 16 5 4 18 18 C 1.38876 * 126.64692 * 119.99930 * 4 2 1 19 19 C 1.40571 * 134.40742 * 359.95271 * 18 4 2 20 20 O 1.21883 * 120.34646 * 0.04438 * 19 18 4 21 21 N 1.34903 * 119.30470 * 180.02562 * 19 18 4 22 22 C 1.46505 * 119.49663 * 179.97438 * 21 19 18 23 23 C 1.34414 * 121.00877 * 0.02562 * 21 19 18 24 24 O 1.21596 * 119.19579 * 179.97438 * 23 21 19 25 25 N 1.34640 * 121.61417 * 359.97438 * 23 21 19 26 26 C 1.46503 * 119.97592 * 179.97438 * 25 23 21 27 27 H 1.09003 * 109.46963 * 299.99986 * 1 2 3 28 28 H 1.08995 * 109.47517 * 59.99973 * 1 2 3 29 29 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46511 * 239.99730 * 2 1 3 31 31 H 1.09002 * 109.46974 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47034 * 299.99518 * 3 2 1 33 33 H 1.09003 * 109.47153 * 60.00131 * 3 2 1 34 34 H 1.09000 * 109.47385 * 299.99958 * 7 6 5 35 35 H 1.09005 * 109.47046 * 60.00120 * 7 6 5 36 36 H 0.96995 * 120.00270 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.46800 * 89.99350 * 22 21 19 38 38 H 1.08999 * 109.47220 * 209.99393 * 22 21 19 39 39 H 1.08998 * 109.47043 * 329.99617 * 22 21 19 40 40 H 1.08993 * 109.46662 * 0.02562 * 26 25 23 41 41 H 1.08992 * 109.46970 * 120.00269 * 26 25 23 42 42 H 1.08999 * 109.47016 * 240.00501 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.7748 -0.3454 2.4894 6 16 0.8043 1.0296 3.0112 7 6 0.9352 0.8432 4.8068 8 6 0.1582 1.9428 5.4839 9 1 -0.3620 2.6804 4.8909 10 6 0.1125 2.0077 6.8603 11 7 -0.5652 2.9675 7.4512 12 14 1.0129 0.7322 7.8860 13 1 2.3952 1.2017 8.1578 14 1 0.2956 0.5343 9.1711 15 1 1.0636 -0.5534 7.1444 16 7 2.3836 -1.1967 3.2911 17 6 3.0279 -2.1176 2.5734 18 6 2.8199 -1.8243 1.2296 19 6 3.4010 -2.6474 0.2494 20 8 3.2322 -2.4090 -0.9339 21 7 4.1476 -3.7038 0.6322 22 6 4.7547 -4.5648 -0.3859 23 6 4.3423 -3.9790 1.9334 24 8 5.0208 -4.9399 2.2413 25 7 3.8043 -3.2169 2.9041 26 6 4.0393 -3.5502 4.3113 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.5282 -0.1238 5.1024 35 1 1.9826 0.9025 5.1028 36 1 -0.5977 3.0130 8.4195 37 1 5.7446 -4.1853 -0.6394 38 1 4.8430 -5.5796 0.0021 39 1 4.1282 -4.5700 -1.2778 40 1 4.6670 -4.4390 4.3741 41 1 4.5401 -2.7166 4.8033 42 1 3.0858 -3.7429 4.8031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004540795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:52 Heat of formation + Delta-G solvation = 0.219419 kcal Electronic energy + Delta-G solvation = -27834.657800 eV Core-core repulsion = 23942.395968 eV Total energy + Delta-G solvation = -3892.261832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.14885 -42.23925 -40.32261 -38.02603 -36.66764 -36.34944 -35.20578 -32.73548 -31.46842 -31.21293 -28.99335 -28.30185 -27.86984 -25.57120 -24.66992 -24.50859 -23.84966 -22.13462 -20.12555 -19.77266 -19.08117 -18.55486 -18.28640 -17.97998 -17.03326 -16.83877 -16.71458 -16.56865 -16.23373 -16.06769 -15.53937 -15.37696 -15.14196 -14.81428 -14.66396 -14.38737 -14.05819 -13.96250 -13.56922 -13.34650 -13.25924 -13.24726 -12.81807 -12.68972 -12.67007 -12.59239 -12.43924 -12.06262 -11.86896 -11.79830 -11.68800 -11.39611 -11.17314 -11.10883 -10.94439 -10.84249 -9.78572 -8.51162 -8.37524 -6.47839 -0.44377 0.01280 0.49387 0.68887 1.21382 1.28748 1.37898 1.42401 1.49014 1.51888 1.70098 2.18947 2.31342 2.85897 2.97378 3.16277 3.46769 3.82046 3.91049 4.00657 4.11995 4.26917 4.34523 4.37287 4.41568 4.42106 4.58535 4.62455 4.71358 4.72403 4.72962 4.74101 4.76277 4.81504 4.85238 5.14564 5.17047 5.29561 5.32389 5.53432 5.91378 6.02130 6.14695 6.21242 6.55797 6.65918 7.16838 8.76754 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.004274 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.009414 B = 6549.193331 C = 8492.539460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 C -0.168 4.168 4 N -0.391 5.391 5 C 0.263 3.737 6 S 0.047 5.953 7 C 0.019 3.981 8 C -0.532 4.532 9 H 0.053 0.947 10 C 0.034 3.966 11 N -0.931 5.931 12 Si 0.937 3.063 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.247 1.247 16 N -0.518 5.518 17 C 0.320 3.680 18 C -0.168 4.168 19 C 0.600 3.400 20 O -0.530 6.530 21 N -0.551 5.551 22 C 0.081 3.919 23 C 0.710 3.290 24 O -0.551 6.551 25 N -0.511 5.511 26 C 0.084 3.916 27 H 0.068 0.932 28 H 0.114 0.886 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.273 0.727 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.239 -11.845 -15.654 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 C -0.226 4.226 4 N -0.076 5.076 5 C -0.107 4.107 6 S 0.280 5.720 7 C -0.130 4.130 8 C -0.571 4.571 9 H 0.071 0.929 10 C -0.168 4.168 11 N -0.570 5.570 12 Si 0.760 3.240 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.170 1.170 16 N -0.246 5.246 17 C 0.084 3.916 18 C -0.288 4.288 19 C 0.396 3.604 20 O -0.409 6.409 21 N -0.294 5.294 22 C -0.058 4.058 23 C 0.412 3.588 24 O -0.426 6.426 25 N -0.238 5.238 26 C -0.057 4.057 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.854 -11.290 -15.902 21.024 hybrid contribution 0.782 -1.049 0.988 1.640 sum 8.636 -12.339 -14.913 21.195 Atomic orbital electron populations 1.22300 0.91372 1.03472 1.05402 1.22147 0.97008 0.94775 0.84372 1.22300 1.01821 0.93028 1.05402 1.45454 1.35889 1.19508 1.06771 1.26055 1.01413 1.01409 0.81808 1.85519 1.56413 1.22459 1.07613 1.21536 1.00734 1.00464 0.90243 1.20539 1.32753 1.11647 0.92132 0.92862 1.25637 0.95265 0.97297 0.98554 1.69969 1.42167 1.33931 1.10884 0.85841 0.79156 0.80594 0.78412 1.18918 1.20423 1.17036 1.70132 1.16539 1.05822 1.32090 1.18296 0.94312 0.90015 0.89008 1.18995 1.14728 1.00271 0.94767 1.15151 0.78012 0.79810 0.87450 1.90843 1.60909 1.71258 1.17857 1.45870 1.47927 1.28278 1.07367 1.22171 0.99455 0.94494 0.89669 1.15453 0.80483 0.82542 0.80280 1.90986 1.42349 1.28483 1.80732 1.43997 1.46639 1.23444 1.09739 1.22150 1.04192 1.04021 0.75291 0.91283 0.86723 0.92295 0.86177 0.92306 0.86725 0.91273 0.93185 0.93387 0.91740 0.89350 0.87818 0.88043 0.86855 0.89910 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 9.22 71.98 0.66 -2.73 16 2 C 0.12 2.71 3.46 44.99 0.16 2.86 16 3 C -0.17 -3.40 9.22 71.98 0.66 -2.74 16 4 N -0.39 -11.64 2.69 -492.28 -1.33 -12.97 16 5 C 0.26 8.97 7.46 179.55 1.34 10.31 16 6 S 0.05 1.69 17.60 -56.49 -0.99 0.69 16 7 C 0.02 0.84 3.99 71.24 0.28 1.12 16 8 C -0.53 -28.25 9.68 25.60 0.25 -28.01 16 9 H 0.05 3.08 7.95 -2.91 -0.02 3.06 16 10 C 0.03 1.86 5.47 84.66 0.46 2.32 16 11 N -0.93 -54.33 13.96 21.45 0.30 -54.03 16 12 Si 0.94 41.39 27.47 68.60 1.88 43.27 16 13 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 16 N -0.52 -18.54 10.49 -192.04 -2.01 -20.56 16 17 C 0.32 10.23 7.68 132.91 1.02 11.25 16 18 C -0.17 -5.18 6.91 38.80 0.27 -4.91 16 19 C 0.60 16.97 7.42 84.79 0.63 17.60 16 20 O -0.53 -15.62 15.09 -4.94 -0.07 -15.70 16 21 N -0.55 -13.64 2.96 -807.45 -2.39 -16.03 16 22 C 0.08 1.39 10.09 127.77 1.29 2.68 16 23 C 0.71 19.05 8.12 179.21 1.45 20.50 16 24 O -0.55 -15.46 15.02 -4.02 -0.06 -15.52 16 25 N -0.51 -14.21 3.06 -678.18 -2.08 -16.28 16 26 C 0.08 1.90 10.63 127.77 1.36 3.25 16 27 H 0.07 1.62 5.85 -2.39 -0.01 1.61 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.12 2.77 6.49 -2.39 -0.02 2.76 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.62 5.84 -2.39 -0.01 1.61 16 34 H 0.05 2.25 7.20 -2.40 -0.02 2.24 16 35 H 0.05 2.14 7.57 -2.39 -0.02 2.12 16 36 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.10 1.58 7.34 -2.39 -0.02 1.57 16 39 H 0.10 1.58 7.40 -2.39 -0.02 1.56 16 40 H 0.11 2.25 6.85 -2.39 -0.02 2.23 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -66.07 356.23 4.09 -61.98 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.00 Total: 11.62 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 9.84 Total: 33.52 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -7.50 Total: -119.87 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.13 Total: -31.22 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.88 Total: 43.27 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -0.99 Total: 0.69 kcal Total: -66.07 4.09 -61.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004540795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.198 kcal (2) G-P(sol) polarization free energy of solvation -66.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds