Wall clock time and date at job start Tue Mar 31 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99432 * 2 1 4 4 H 1.48501 * 109.47141 * 269.99799 * 3 2 1 5 5 H 1.48493 * 109.47275 * 30.00134 * 3 2 1 6 6 H 1.48498 * 109.46840 * 150.00341 * 3 2 1 7 7 C 1.38667 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 0.27936 * 7 2 1 9 9 S 1.76202 * 120.00266 * 179.97438 * 7 2 1 10 10 C 1.76191 * 100.00304 * 180.02562 * 9 7 2 11 11 N 1.31658 * 126.38639 * 359.69211 * 10 9 7 12 12 N 1.28516 * 110.01654 * 179.85308 * 11 10 9 13 13 C 1.31499 * 109.93393 * 0.41967 * 12 11 10 14 14 C 1.47751 * 126.44459 * 179.72578 * 13 12 11 15 15 C 1.40057 * 120.92996 * 145.98695 * 14 13 12 16 16 C 1.37909 * 118.98581 * 179.73404 * 15 14 13 17 17 N 1.31967 * 120.90315 * 0.55300 * 16 15 14 18 18 C 1.31953 * 122.07563 * 359.71217 * 17 16 15 19 19 C 1.37906 * 120.90722 * 0.02562 * 18 17 16 20 20 N 1.36630 * 126.38750 * 180.02562 * 10 9 7 21 21 C 1.46504 * 127.14410 * 359.95956 * 20 10 9 22 22 C 1.50701 * 109.47013 * 94.49977 * 21 20 10 23 23 C 1.38235 * 120.00404 * 269.72666 * 22 21 20 24 24 C 1.38230 * 120.00515 * 179.76455 * 23 22 21 25 25 C 1.38240 * 119.99602 * 0.51187 * 24 23 22 26 26 C 1.38234 * 119.99811 * 359.73795 * 25 24 23 27 27 C 1.38231 * 120.00308 * 0.02562 * 26 25 24 28 28 H 0.96999 * 120.00479 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.50995 * 359.97438 * 15 14 13 30 30 H 1.07997 * 119.54440 * 180.27301 * 16 15 14 31 31 H 1.08003 * 119.55157 * 180.02562 * 18 17 16 32 32 H 1.08003 * 120.50732 * 179.97438 * 19 18 17 33 33 H 1.09000 * 109.47228 * 214.50135 * 21 20 10 34 34 H 1.09003 * 109.47299 * 334.50180 * 21 20 10 35 35 H 1.08002 * 119.99663 * 0.02562 * 23 22 21 36 36 H 1.08000 * 120.00528 * 180.23200 * 24 23 22 37 37 H 1.08000 * 119.99922 * 179.72525 * 25 24 23 38 38 H 1.08004 * 119.99582 * 179.97438 * 26 25 24 39 39 H 1.08002 * 119.99765 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0097 -1.2009 -0.0005 8 1 1.4697 -2.1362 -0.0055 9 16 3.7717 -1.2009 -0.0012 10 6 4.0777 -2.9360 -0.0025 11 7 3.1696 -3.8892 0.0029 12 7 3.7405 -5.0406 -0.0031 13 6 5.0472 -4.8932 -0.0037 14 6 6.0526 -5.9758 -0.0041 15 6 7.2719 -5.8256 -0.6767 16 6 8.1838 -6.8598 -0.6463 17 7 7.9153 -7.9815 -0.0050 18 6 6.7772 -8.1666 0.6367 19 6 5.8107 -7.1833 0.6628 20 7 5.3017 -3.5431 -0.0029 21 6 6.6132 -2.8901 -0.0032 22 6 7.1129 -2.7661 1.4132 23 6 6.8149 -1.6385 2.1551 24 6 7.2691 -1.5269 3.4559 25 6 8.0303 -2.5384 4.0113 26 6 8.3327 -3.6638 3.2676 27 6 7.8743 -3.7775 1.9685 28 1 -0.4851 0.8400 -0.0004 29 1 7.4963 -4.9124 -1.2078 30 1 9.1286 -6.7520 -1.1581 31 1 6.6002 -9.1010 1.1486 32 1 4.8813 -7.3419 1.1897 33 1 7.3158 -3.4862 -0.5855 34 1 6.5248 -1.8977 -0.4454 35 1 6.2236 -0.8464 1.7199 36 1 7.0332 -0.6476 4.0368 37 1 8.3890 -2.4493 5.0261 38 1 8.9278 -4.4538 3.7014 39 1 8.1109 -4.6566 1.3874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004966541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:28 Heat of formation + Delta-G solvation = 142.299578 kcal Electronic energy + Delta-G solvation = -25796.623024 eV Core-core repulsion = 22217.831170 eV Total energy + Delta-G solvation = -3578.791855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.090 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31865 -40.05106 -39.32436 -35.23976 -33.38994 -32.69809 -31.46960 -31.32398 -30.97554 -29.43185 -26.81490 -25.92911 -24.22401 -23.79153 -22.71464 -22.13785 -21.59818 -20.73828 -18.28395 -17.53745 -17.04084 -16.56432 -16.19987 -15.94765 -15.72421 -15.35426 -15.16573 -15.02561 -14.94919 -13.98883 -13.95098 -13.78397 -13.47931 -13.37176 -13.09788 -12.76533 -12.53259 -11.99033 -11.78665 -11.53451 -11.34289 -11.26932 -11.14208 -11.06358 -10.58685 -10.18258 -10.02972 -9.93752 -9.70771 -9.41898 -9.35842 -9.14301 -9.02756 -8.97556 -8.86321 -7.18589 -6.48709 -4.30277 0.70670 0.95438 1.06598 1.29875 2.03240 2.25139 2.90731 3.05834 3.10611 3.22300 3.32237 3.70332 3.72101 3.99504 4.14856 4.22312 4.27567 4.41967 4.49336 4.64027 4.78405 4.87713 4.89066 4.89643 4.96170 5.03532 5.18788 5.37248 5.42064 5.47879 5.53950 5.63800 5.70265 5.80889 5.89683 6.03487 6.21842 6.30819 6.38205 6.40399 6.45419 6.48395 6.85219 7.04807 7.76475 7.76588 8.56473 8.88912 9.17818 10.60317 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.004235 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.830010 B = 6610.269438 C = 8176.445300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.102 3.898 3 Si 0.842 3.158 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.240 1.240 7 C -0.527 4.527 8 H 0.122 0.878 9 S 0.061 5.939 10 C 0.200 3.800 11 N -0.286 5.286 12 N -0.256 5.256 13 C 0.165 3.835 14 C 0.062 3.938 15 C -0.175 4.175 16 C 0.104 3.896 17 N -0.487 5.487 18 C 0.105 3.895 19 C -0.139 4.139 20 N -0.464 5.464 21 C 0.143 3.857 22 C -0.115 4.115 23 C -0.089 4.089 24 C -0.120 4.120 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.098 4.098 28 H 0.276 0.724 29 H 0.136 0.864 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.144 0.856 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.459 -6.203 3.412 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.109 4.109 3 Si 0.666 3.334 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.164 1.164 7 C -0.675 4.675 8 H 0.140 0.860 9 S 0.293 5.707 10 C -0.170 4.170 11 N -0.132 5.132 12 N -0.099 5.099 13 C -0.101 4.101 14 C 0.051 3.949 15 C -0.197 4.197 16 C -0.053 4.053 17 N -0.196 5.196 18 C -0.052 4.052 19 C -0.160 4.160 20 N -0.160 5.160 21 C 0.021 3.979 22 C -0.116 4.116 23 C -0.108 4.108 24 C -0.138 4.138 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.117 4.117 28 H 0.086 0.914 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.162 0.838 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 20.193 -6.415 3.389 21.457 hybrid contribution -0.222 1.188 -0.009 1.209 sum 19.971 -5.227 3.380 20.919 Atomic orbital electron populations 1.69901 1.05648 1.27971 1.45767 1.24657 0.94578 0.98311 0.93306 0.87019 0.81663 0.84493 0.80210 1.18628 1.18818 1.16434 1.22527 0.86029 0.99551 1.59408 0.85998 1.82665 1.13335 0.86871 1.87835 1.27591 0.82191 1.03806 1.03441 1.74950 1.23686 0.93009 1.21522 1.74374 1.01764 1.18818 1.14919 1.22369 0.93542 0.82395 1.11794 1.17769 0.90752 0.91141 0.95204 1.22327 0.94456 1.01520 1.01396 1.22609 0.98844 0.88203 0.95635 1.67655 1.20854 1.23202 1.07929 1.22706 0.88509 0.98601 0.95345 1.22270 1.01408 0.92896 0.99467 1.46353 1.06595 1.05303 1.57735 1.20905 0.81886 1.00246 0.94906 1.19894 0.99985 0.95832 0.95860 1.21288 0.97518 0.97539 0.94416 1.21194 0.98024 0.99320 0.95263 1.21219 0.98015 0.93936 0.99705 1.21092 1.00722 0.98145 0.94351 1.21063 0.97213 0.97718 0.95688 0.91390 0.84634 0.82411 0.82217 0.83779 0.87873 0.87293 0.85015 0.85617 0.86005 0.86052 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.74 13.97 55.48 0.77 -23.97 16 2 C 0.10 2.79 5.50 -17.48 -0.10 2.70 16 3 Si 0.84 18.80 27.73 -169.99 -4.71 14.08 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.24 -4.96 6.74 56.52 0.38 -4.58 16 7 C -0.53 -14.61 9.91 30.89 0.31 -14.30 16 8 H 0.12 3.82 7.15 -52.48 -0.38 3.44 16 9 S 0.06 1.36 19.26 -107.50 -2.07 -0.71 16 10 C 0.20 4.39 8.06 -87.94 -0.71 3.69 16 11 N -0.29 -7.07 11.03 30.76 0.34 -6.73 16 12 N -0.26 -5.63 12.21 32.57 0.40 -5.23 16 13 C 0.16 2.96 7.58 -153.79 -1.17 1.79 16 14 C 0.06 0.86 5.68 -104.65 -0.59 0.27 16 15 C -0.18 -1.90 7.43 -39.02 -0.29 -2.19 16 16 C 0.10 1.00 11.17 -17.61 -0.20 0.81 16 17 N -0.49 -5.41 10.35 -13.36 -0.14 -5.55 16 18 C 0.10 1.10 11.17 -17.62 -0.20 0.91 16 19 C -0.14 -1.72 9.88 -39.03 -0.39 -2.11 16 20 N -0.46 -8.14 2.81 -115.32 -0.32 -8.47 16 21 C 0.14 1.86 5.86 -5.19 -0.03 1.83 16 22 C -0.11 -1.48 5.46 -104.62 -0.57 -2.05 16 23 C -0.09 -1.18 9.70 -39.59 -0.38 -1.57 16 24 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 25 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 26 C -0.13 -1.34 10.05 -39.59 -0.40 -1.74 16 27 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 28 H 0.28 7.27 8.31 -40.82 -0.34 6.94 16 29 H 0.14 1.24 5.51 -52.48 -0.29 0.96 16 30 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.14 1.80 8.06 -52.48 -0.42 1.37 16 33 H 0.10 1.04 4.75 -51.93 -0.25 0.79 16 34 H 0.11 1.34 7.66 -51.93 -0.40 0.94 16 35 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.12 1.28 6.20 -52.49 -0.33 0.95 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -33.15 351.55 -10.08 -43.23 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -3.75 Total: 4.92 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -5.89 Total: -16.87 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 1.05 Total: -49.95 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.08 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.07 Total: -0.71 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.15 -10.08 -43.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004966541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.532 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds