Wall clock time and date at job start Tue Mar 31 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36746 * 127.16090 * 2 1 4 4 S 1.76202 * 126.38595 * 359.97438 * 3 2 1 5 5 C 1.76200 * 99.99856 * 180.28957 * 4 3 2 6 6 H 1.07998 * 120.00131 * 0.02562 * 5 4 3 7 7 C 1.38644 * 120.00070 * 179.97438 * 5 4 3 8 8 N 1.31651 * 119.99599 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00105 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46981 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47019 * 120.00101 * 9 7 5 12 12 H 1.48499 * 109.47338 * 240.00420 * 9 7 5 13 13 N 1.31563 * 107.22392 * 180.25981 * 3 2 1 14 14 N 1.28516 * 110.03093 * 359.73612 * 13 3 2 15 15 C 1.31506 * 109.94593 * 359.97438 * 14 13 3 16 16 C 1.47772 * 126.44047 * 180.02562 * 15 14 13 17 17 C 1.39626 * 120.15070 * 132.44017 * 16 15 14 18 18 C 1.37921 * 119.86109 * 179.97438 * 17 16 15 19 19 C 1.38407 * 120.16851 * 0.02562 * 18 17 16 20 20 C 1.38324 * 120.31092 * 359.74533 * 19 18 17 21 21 C 1.38073 * 120.13695 * 0.51044 * 20 19 18 22 22 Br 1.89093 * 120.08749 * 179.76679 * 21 20 19 23 23 H 1.09002 * 109.47641 * 265.13024 * 1 2 3 24 24 H 1.09003 * 109.46975 * 25.13045 * 1 2 3 25 25 H 1.09005 * 109.46958 * 145.12593 * 1 2 3 26 26 H 0.97003 * 119.99509 * 180.02562 * 8 7 5 27 27 H 1.08003 * 120.06866 * 359.97438 * 17 16 15 28 28 H 1.07997 * 119.91884 * 179.97438 * 18 17 16 29 29 H 1.07997 * 119.84589 * 179.97438 * 19 18 17 30 30 H 1.07995 * 119.93269 * 180.27418 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2909 1.0898 0.0000 4 16 1.7919 2.7797 -0.0006 5 6 3.3694 3.5645 -0.0091 6 1 4.2695 2.9677 -0.0125 7 6 3.4552 4.9483 -0.0123 8 7 2.3580 5.6758 -0.0086 9 14 5.1276 5.7804 -0.0220 10 1 6.1944 4.7473 -0.0255 11 1 5.2532 6.6251 -1.2368 12 1 5.2648 6.6301 1.1881 13 7 3.5277 0.6412 -0.0057 14 7 3.5298 -0.6440 -0.0037 15 6 2.2944 -1.0946 0.0040 16 6 1.8772 -2.5122 0.0091 17 6 0.9025 -2.9532 0.9064 18 6 0.5172 -4.2775 0.9057 19 6 1.0946 -5.1693 0.0186 20 6 2.0574 -4.7392 -0.8765 21 6 2.4565 -3.4174 -0.8832 22 35 3.7776 -2.8322 -2.1030 23 1 -0.3634 -0.0872 1.0239 24 1 -0.3633 0.9304 -0.4364 25 1 -0.3633 -0.8431 -0.5876 26 1 2.4180 6.6440 -0.0113 27 1 0.4512 -2.2586 1.5995 28 1 -0.2363 -4.6196 1.5995 29 1 0.7893 -6.2052 0.0228 30 1 2.5007 -5.4394 -1.5689 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004976696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:50 Heat of formation + Delta-G solvation = 101.419316 kcal Electronic energy + Delta-G solvation = -18069.486831 eV Core-core repulsion = 15038.509983 eV Total energy + Delta-G solvation = -3030.976848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 338.974 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.96934 -39.19108 -34.43134 -32.71008 -32.66302 -31.94454 -29.54981 -28.60482 -27.16622 -25.69856 -23.46349 -22.72066 -21.60551 -20.48916 -18.04686 -17.36581 -16.26434 -15.94983 -15.38208 -15.35855 -14.93909 -14.78970 -13.94787 -13.68338 -13.39585 -13.08677 -12.99416 -12.72285 -11.75500 -11.45385 -11.42084 -11.16381 -11.06170 -10.88019 -10.68247 -10.21534 -10.11709 -9.91425 -9.71427 -9.53199 -9.25506 -8.91600 -8.86928 -8.49167 -6.77764 -6.48397 -4.22310 0.75270 0.98434 1.71031 2.32652 2.45519 3.17991 3.23293 3.26868 3.36105 3.37799 3.66265 4.00679 4.36030 4.58790 4.69938 4.88660 4.96070 5.01011 5.06528 5.12366 5.27564 5.34507 5.55605 5.62751 5.84510 5.93792 6.13138 6.16732 6.37696 6.52947 6.68887 7.30767 7.56837 8.37711 9.04415 9.42675 10.60017 Molecular weight = 338.97amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.003864 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.504817 B = 7243.979891 C = 8292.624288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.473 5.473 3 C 0.176 3.824 4 S 0.138 5.862 5 C -0.531 4.531 6 H 0.107 0.893 7 C 0.076 3.924 8 N -0.879 5.879 9 Si 0.931 3.069 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.303 5.303 14 N -0.245 5.245 15 C 0.151 3.849 16 C 0.038 3.962 17 C -0.102 4.102 18 C -0.104 4.104 19 C -0.113 4.113 20 C -0.092 4.092 21 C -0.065 4.065 22 Br -0.025 7.025 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.273 0.727 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 -20.218 -1.317 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.170 5.170 3 C -0.193 4.193 4 S 0.370 5.630 5 C -0.680 4.680 6 H 0.125 0.875 7 C -0.133 4.133 8 N -0.514 5.514 9 Si 0.757 3.243 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.204 1.204 13 N -0.149 5.149 14 N -0.086 5.086 15 C -0.116 4.116 16 C 0.033 3.967 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.147 4.147 22 Br 0.061 6.939 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.060 -19.188 -1.796 20.202 hybrid contribution 0.331 -0.111 0.311 0.467 sum -5.729 -19.299 -1.485 20.187 Atomic orbital electron populations 1.21981 0.76229 1.04892 1.03317 1.46173 1.07715 1.04821 1.58254 1.28453 0.89277 0.98410 1.03204 1.83393 1.13227 0.80098 1.86279 1.23263 0.92580 0.93675 1.58434 0.87545 1.25064 0.98876 0.95946 0.93459 1.69961 1.27654 1.06760 1.47027 0.85882 0.81579 0.78978 0.77911 1.18777 1.20363 1.20352 1.74813 1.16146 1.01252 1.22740 1.74419 1.15965 1.04229 1.14037 1.22282 0.87956 0.88136 1.13222 1.17356 0.96204 0.87635 0.95535 1.21275 0.96725 0.96497 0.97743 1.21147 0.99646 0.92768 0.98715 1.21236 0.96489 1.00047 0.95488 1.21065 0.97373 0.93445 0.99292 1.22022 0.98873 0.95530 0.98311 1.96806 1.50454 1.90474 1.56139 0.90572 0.88633 0.90003 0.91687 0.85135 0.85021 0.85006 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.06 59.84 0.60 1.65 16 2 N -0.47 -8.90 3.23 -121.40 -0.39 -9.29 16 3 C 0.18 4.10 8.06 -87.91 -0.71 3.39 16 4 S 0.14 3.39 21.28 -107.50 -2.29 1.10 16 5 C -0.53 -14.86 9.37 30.88 0.29 -14.57 16 6 H 0.11 3.10 6.92 -52.49 -0.36 2.74 16 7 C 0.08 2.06 5.49 -17.48 -0.10 1.96 16 8 N -0.88 -24.40 13.22 55.48 0.73 -23.66 16 9 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 10 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.30 -7.68 11.03 30.77 0.34 -7.34 16 14 N -0.24 -5.56 10.92 32.57 0.36 -5.21 16 15 C 0.15 2.87 6.78 -153.81 -1.04 1.83 16 16 C 0.04 0.56 5.62 -104.94 -0.59 -0.03 16 17 C -0.10 -1.17 9.09 -39.18 -0.36 -1.52 16 18 C -0.10 -0.90 10.03 -39.64 -0.40 -1.30 16 19 C -0.11 -0.95 10.04 -39.49 -0.40 -1.34 16 20 C -0.09 -0.96 9.78 -39.61 -0.39 -1.34 16 21 C -0.07 -0.91 6.26 -39.10 -0.24 -1.16 16 22 Br -0.03 -0.39 31.68 -68.01 -2.15 -2.54 16 23 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 24 H 0.10 1.25 7.72 -51.93 -0.40 0.85 16 25 H 0.08 0.88 8.00 -51.93 -0.42 0.47 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.13 1.35 7.71 -52.48 -0.40 0.95 16 28 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 29 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -32.76 303.74 -9.59 -42.35 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -2.41 Total: -3.87 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.33 Total: -12.44 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 1.04 Total: -45.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.29 Total: 1.10 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -2.15 Total: -2.54 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.76 -9.59 -42.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004976696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.769 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds