Wall clock time and date at job start Tue Mar 31 2020 08:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45207 * 109.47059 * 2 1 4 4 C 1.34225 * 116.99735 * 180.02562 * 3 2 1 5 5 O 1.20836 * 120.00165 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99878 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.61450 * 100.11576 * 6 4 3 8 8 C 1.53401 * 109.61971 * 339.75158 * 6 4 3 9 9 C 1.53024 * 107.80881 * 172.25271 * 8 6 4 10 10 C 1.50764 * 109.75766 * 47.05431 * 9 8 6 11 11 C 1.40925 * 118.14049 * 164.22700 * 10 9 8 12 12 C 1.40632 * 120.78905 * 359.72289 * 11 10 9 13 13 C 1.36100 * 119.59984 * 180.10358 * 12 11 10 14 14 C 1.39379 * 120.99712 * 359.97438 * 13 12 11 15 15 C 1.36130 * 120.99385 * 359.94233 * 14 13 12 16 16 C 1.40520 * 119.60767 * 0.02562 * 15 14 13 17 17 C 1.40566 * 121.29798 * 180.15704 * 16 15 14 18 18 C 1.35560 * 119.77816 * 180.30044 * 17 16 15 19 19 C 1.37240 * 122.27681 * 344.19329 * 10 9 8 20 20 N 1.39472 * 122.81876 * 1.25107 * 19 10 9 21 21 C 1.46901 * 111.00895 * 104.94772 * 20 19 10 22 22 C 1.50701 * 109.47437 * 65.36949 * 21 20 19 23 23 H 1.07992 * 119.99878 * 4.68739 * 22 21 20 24 24 C 1.37878 * 120.00186 * 184.68915 * 22 21 20 25 25 N 1.31518 * 119.99550 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00154 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46842 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47227 * 119.99826 * 26 24 22 29 29 H 1.48496 * 109.47086 * 239.99955 * 26 24 22 30 30 H 1.09007 * 109.46743 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47194 * 59.99371 * 1 2 3 32 32 H 1.08995 * 109.47180 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46539 * 240.00770 * 2 1 3 34 34 H 1.08990 * 109.47269 * 120.00542 * 2 1 3 35 35 H 1.08996 * 109.79651 * 291.83935 * 8 6 4 36 36 H 1.09002 * 109.78965 * 52.68062 * 8 6 4 37 37 H 1.09005 * 109.42203 * 167.13523 * 9 8 6 38 38 H 1.08996 * 109.42779 * 286.95951 * 9 8 6 39 39 H 1.08001 * 120.20568 * 0.13214 * 12 11 10 40 40 H 1.07998 * 119.50550 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.50261 * 179.97438 * 14 13 12 42 42 H 1.08005 * 120.19803 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.10581 * 0.27585 * 17 16 15 44 44 H 1.07998 * 119.22401 * 180.02562 * 18 17 16 45 45 H 1.09004 * 109.47364 * 185.37147 * 21 20 19 46 46 H 1.09007 * 109.46989 * 305.36423 * 21 20 19 47 47 H 0.96998 * 119.99519 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 4.2277 3.2060 1.0108 8 6 2.8647 3.9318 -0.4990 9 6 3.4198 5.3437 -0.2990 10 6 4.8362 5.4117 -0.8110 11 6 5.4035 6.6830 -1.0300 12 6 4.6643 7.8535 -0.7825 13 6 5.2354 9.0687 -1.0043 14 6 6.5439 9.1721 -1.4733 15 6 7.2892 8.0605 -1.7221 16 6 6.7331 6.7886 -1.5040 17 6 7.4718 5.6174 -1.7459 18 6 6.9027 4.4060 -1.5308 19 6 5.5783 4.2856 -1.0655 20 7 5.0765 2.9954 -0.8963 21 6 4.7693 2.3756 -2.1923 22 6 6.0448 2.1803 -2.9707 23 1 6.9959 2.4154 -2.5166 24 6 5.9974 1.7015 -4.2629 25 7 4.8391 1.4147 -4.8158 26 14 7.5785 1.4587 -5.2275 27 1 8.7372 1.8513 -4.3857 28 1 7.7082 0.0308 -5.6141 29 1 7.5471 2.3015 -6.4497 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 2.6661 3.7596 -1.5568 36 1 1.9452 3.8122 0.0741 37 1 2.8024 6.0568 -0.8453 38 1 3.4057 5.5919 0.7623 39 1 3.6497 7.7885 -0.4181 40 1 4.6662 9.9666 -0.8142 41 1 6.9730 10.1488 -1.6414 42 1 8.3021 8.1556 -2.0849 43 1 8.4892 5.6825 -2.1023 44 1 7.4785 3.5120 -1.7192 45 1 4.2917 1.4095 -2.0290 46 1 4.0961 3.0232 -2.7542 47 1 4.8058 1.0775 -5.7246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005012010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:27 Heat of formation + Delta-G solvation = -27.276092 kcal Electronic energy + Delta-G solvation = -30142.771825 eV Core-core repulsion = 26255.528523 eV Total energy + Delta-G solvation = -3887.243303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.91568 -39.91102 -38.21174 -36.21000 -35.02940 -33.99425 -32.51351 -31.83964 -31.18839 -29.19177 -28.85877 -27.60247 -25.34714 -23.42701 -23.09385 -22.76137 -22.58752 -21.33424 -20.47955 -19.36661 -17.38260 -17.02329 -16.87329 -16.61058 -16.10363 -15.90247 -15.34602 -14.80930 -14.65559 -14.22244 -14.02864 -13.85652 -13.61049 -13.38564 -13.23394 -13.11111 -12.91973 -12.70866 -12.48448 -12.31455 -12.09902 -12.04951 -11.73901 -11.56456 -11.37872 -11.23732 -11.05019 -10.89846 -10.84631 -10.69939 -10.46751 -10.28976 -10.21768 -9.82517 -9.75300 -9.32048 -9.09738 -8.60488 -8.31215 -7.62869 -7.02889 -6.11587 -4.12257 0.96963 1.49560 2.46649 2.58333 2.91715 3.27567 3.34827 3.37727 3.42964 4.28960 4.48120 4.57535 4.82289 4.89994 5.02027 5.04786 5.09371 5.12503 5.23129 5.25845 5.28484 5.32414 5.39344 5.45090 5.56114 5.59811 5.73593 5.78408 5.80502 5.85713 5.88467 5.94387 6.00946 6.09443 6.20390 6.33928 6.39360 6.42369 6.51470 6.68683 6.74037 6.76704 6.85763 7.03591 7.06545 7.19651 7.24895 7.38738 7.66515 7.94011 8.04014 8.18707 8.31885 8.90548 9.50342 10.99559 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.005136 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.934673 B = 5450.036347 C = 8074.940106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.472 3.528 5 O -0.480 6.480 6 C 0.101 3.899 7 H 0.116 0.884 8 C -0.152 4.152 9 C -0.068 4.068 10 C -0.148 4.148 11 C -0.027 4.027 12 C -0.113 4.113 13 C -0.125 4.125 14 C -0.138 4.138 15 C -0.099 4.099 16 C -0.064 4.064 17 C -0.119 4.119 18 C -0.076 4.076 19 C 0.166 3.834 20 N -0.486 5.486 21 C 0.192 3.808 22 C -0.514 4.514 23 H 0.078 0.922 24 C 0.060 3.940 25 N -0.894 5.894 26 Si 0.897 3.103 27 H -0.270 1.270 28 H -0.283 1.283 29 H -0.284 1.284 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.147 0.853 45 H 0.042 0.958 46 H 0.008 0.992 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 8.822 9.971 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.312 3.688 5 O -0.364 6.364 6 C -0.008 4.008 7 H 0.133 0.867 8 C -0.191 4.191 9 C -0.105 4.105 10 C -0.152 4.152 11 C -0.028 4.028 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.156 4.156 15 C -0.117 4.117 16 C -0.064 4.064 17 C -0.138 4.138 18 C -0.094 4.094 19 C 0.068 3.932 20 N -0.203 5.203 21 C 0.071 3.929 22 C -0.552 4.552 23 H 0.095 0.905 24 C -0.143 4.143 25 N -0.533 5.533 26 Si 0.725 3.275 27 H -0.194 1.194 28 H -0.209 1.209 29 H -0.210 1.210 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.060 0.940 46 H 0.025 0.975 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.593 8.040 10.006 13.633 hybrid contribution 0.230 0.009 -1.109 1.132 sum -4.362 8.049 8.897 12.766 Atomic orbital electron populations 1.21780 0.92928 1.02649 1.03318 1.22970 0.95030 0.80686 1.02640 1.86477 1.24767 1.31961 1.84462 1.23278 0.80421 0.92323 0.72742 1.90704 1.60112 1.42520 1.43104 1.21347 0.91026 0.88438 1.00018 0.86686 1.22225 0.98476 0.94672 1.03698 1.20394 0.92480 0.96957 1.00648 1.19773 0.95606 0.91984 1.07852 1.17768 0.93256 0.92615 0.99158 1.20995 0.99498 0.91856 1.00780 1.20693 0.95507 0.97289 1.00844 1.20673 0.94861 0.98169 1.01942 1.20963 0.99445 0.91753 0.99509 1.17980 0.93737 0.93707 1.00979 1.20768 0.99598 0.91523 1.01909 1.21389 0.93863 0.98520 0.95662 1.18394 0.93176 0.87003 0.94596 1.58683 1.28836 1.16069 1.16690 1.20055 0.97938 0.93993 0.80898 1.21376 0.92799 1.43537 0.97495 0.90456 1.24960 0.96454 0.95306 0.97532 1.69961 1.24155 1.44531 1.14683 0.86443 0.83321 0.77860 0.79925 1.19398 1.20914 1.20968 0.91767 0.91407 0.90531 0.90986 0.91577 0.90077 0.89746 0.90430 0.90943 0.86075 0.86841 0.86853 0.86204 0.85939 0.83519 0.94048 0.97452 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.36 -5.91 9.03 -39.24 -0.35 -6.27 16 4 C 0.47 9.06 5.93 36.00 0.21 9.27 16 5 O -0.48 -10.84 15.47 -18.76 -0.29 -11.13 16 6 C 0.10 1.82 2.73 -68.94 -0.19 1.63 16 7 H 0.12 1.83 8.11 -51.93 -0.42 1.41 16 8 C -0.15 -2.38 4.96 -26.51 -0.13 -2.51 16 9 C -0.07 -0.98 4.87 -27.84 -0.14 -1.12 16 10 C -0.15 -2.64 5.78 -103.94 -0.60 -3.24 16 11 C -0.03 -0.46 5.75 -106.72 -0.61 -1.07 16 12 C -0.11 -1.60 9.21 -39.45 -0.36 -1.96 16 13 C -0.13 -1.59 9.95 -39.93 -0.40 -1.99 16 14 C -0.14 -1.76 9.95 -39.91 -0.40 -2.16 16 15 C -0.10 -1.40 9.77 -39.48 -0.39 -1.78 16 16 C -0.06 -1.07 5.74 -106.90 -0.61 -1.69 16 17 C -0.12 -2.09 9.74 -39.66 -0.39 -2.48 16 18 C -0.08 -1.52 8.27 -39.54 -0.33 -1.85 16 19 C 0.17 3.37 5.09 -83.75 -0.43 2.95 16 20 N -0.49 -10.51 4.28 -166.34 -0.71 -11.22 16 21 C 0.19 4.95 3.92 -4.97 -0.02 4.93 16 22 C -0.51 -14.08 8.01 -34.44 -0.28 -14.35 16 23 H 0.08 2.04 4.56 -52.49 -0.24 1.80 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 25 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 26 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.12 8.13 -51.93 -0.42 0.69 16 34 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 35 H 0.08 1.49 6.68 -51.93 -0.35 1.14 16 36 H 0.08 1.11 7.61 -51.93 -0.39 0.72 16 37 H 0.08 1.02 7.02 -51.93 -0.36 0.66 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.12 1.45 6.48 -52.49 -0.34 1.11 16 40 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.15 3.12 5.22 -52.49 -0.27 2.85 16 45 H 0.04 1.17 5.62 -51.93 -0.29 0.87 16 46 H 0.01 0.21 6.97 -51.93 -0.36 -0.15 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -32.17 372.16 -10.96 -43.13 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.40 Total: 4.91 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -4.53 Total: -15.92 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.03 Total: -36.79 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.64 Total: -17.40 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.17 -10.96 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005012010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.851 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds