Wall clock time and date at job start Tue Mar 31 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30953 * 1 3 3 Si 1.86801 * 120.00613 * 2 1 4 4 H 1.48500 * 109.46788 * 270.00277 * 3 2 1 5 5 H 1.48502 * 109.46799 * 29.99695 * 3 2 1 6 6 H 1.48495 * 109.47599 * 150.00249 * 3 2 1 7 7 C 1.39701 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99541 * 190.37287 * 7 2 1 9 9 N 1.36003 * 120.00207 * 10.10109 * 7 2 1 10 10 C 1.34509 * 126.01765 * 197.60798 * 9 7 2 11 11 O 1.21651 * 124.95220 * 359.97089 * 10 9 7 12 12 C 1.47195 * 110.10024 * 179.97438 * 10 9 7 13 13 O 1.35356 * 125.41073 * 179.97438 * 12 10 9 14 14 C 1.35898 * 109.18208 * 359.97438 * 12 10 9 15 15 C 1.46168 * 126.67538 * 179.97438 * 14 12 10 16 16 O 1.21747 * 120.00498 * 295.83700 * 15 14 12 17 17 C 1.47881 * 119.99496 * 115.83923 * 15 14 12 18 18 C 1.39642 * 120.14724 * 354.12575 * 17 15 14 19 19 C 1.37938 * 119.84572 * 179.70015 * 18 17 15 20 20 C 1.38396 * 120.14532 * 0.57337 * 19 18 17 21 21 C 1.38382 * 120.30120 * 359.72417 * 20 19 18 22 22 C 1.37930 * 120.15577 * 359.97438 * 21 20 19 23 23 C 1.46775 * 126.01640 * 17.28990 * 9 7 2 24 24 H 1.08998 * 110.12805 * 299.16456 * 23 9 7 25 25 C 1.50697 * 110.12577 * 60.84465 * 23 9 7 26 26 C 1.34518 * 125.79008 * 219.66489 * 25 23 9 27 27 C 1.41385 * 106.83936 * 179.89142 * 26 25 23 28 28 C 1.34509 * 106.83952 * 0.36531 * 27 26 25 29 29 O 1.34306 * 125.78743 * 39.96642 * 25 23 9 30 30 H 0.97006 * 119.99463 * 359.97438 * 1 2 3 31 31 H 0.96692 * 113.99687 * 0.02562 * 13 12 10 32 32 H 1.07995 * 120.07986 * 359.97438 * 18 17 15 33 33 H 1.07994 * 119.92763 * 180.29789 * 19 18 17 34 34 H 1.07993 * 119.84421 * 179.69720 * 20 19 18 35 35 H 1.08001 * 119.92272 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.07873 * 179.97438 * 22 21 20 37 37 H 1.07997 * 126.58042 * 0.02562 * 26 25 23 38 38 H 1.08000 * 126.57746 * 180.12191 * 27 26 25 39 39 H 1.08008 * 125.78890 * 179.75504 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2437 1.6176 0.0000 4 1 2.4912 2.0463 -1.4001 5 1 1.4412 2.6526 0.7000 6 1 3.5413 1.4400 0.6999 7 6 2.0080 -1.2099 0.0005 8 1 3.0747 -1.2175 0.1690 9 7 1.3437 -2.3787 -0.2055 10 6 1.7985 -3.6096 0.0899 11 8 2.8815 -3.8514 0.5884 12 6 0.7948 -4.6215 -0.2781 13 8 0.9327 -5.9582 -0.1157 14 6 -0.2923 -4.0005 -0.8067 15 6 -1.5105 -4.6412 -1.2984 16 8 -1.4613 -5.3851 -2.2610 17 6 -2.8030 -4.3858 -0.6267 18 6 -2.8458 -3.6330 0.5486 19 6 -4.0555 -3.3933 1.1667 20 6 -5.2235 -3.9071 0.6309 21 6 -5.1874 -4.6592 -0.5301 22 6 -3.9854 -4.9013 -1.1618 23 6 0.0017 -2.5184 -0.7833 24 1 -0.7294 -1.9994 -0.1635 25 6 -0.0195 -1.9652 -2.1849 26 6 -1.0171 -1.2479 -2.7325 27 6 -0.6197 -0.9352 -4.0528 28 6 0.5933 -1.4870 -4.2358 29 8 0.9519 -2.1096 -3.1011 30 1 -0.4850 0.8401 0.0004 31 1 1.7756 -6.2216 0.2781 32 1 -1.9345 -3.2355 0.9703 33 1 -4.0907 -2.8072 2.0730 34 1 -6.1673 -3.7206 1.1215 35 1 -6.1026 -5.0576 -0.9426 36 1 -3.9586 -5.4888 -2.0676 37 1 -1.9428 -0.9635 -2.2545 38 1 -1.1838 -0.3662 -4.7770 39 1 1.1794 -1.4380 -5.1417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005483304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:10 Heat of formation + Delta-G solvation = -23.721277 kcal Electronic energy + Delta-G solvation = -29876.371331 eV Core-core repulsion = 25717.615988 eV Total energy + Delta-G solvation = -4158.755343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.098 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92447 -40.32508 -39.27234 -37.74112 -37.05876 -35.53826 -33.35682 -32.31114 -31.48448 -30.84647 -30.35760 -29.38896 -26.17437 -25.26864 -24.12805 -22.48753 -21.76372 -21.04071 -20.39803 -20.09020 -18.92192 -17.82666 -17.31267 -17.05428 -16.34592 -15.89148 -15.44695 -15.23962 -15.12425 -14.86620 -14.36576 -14.25117 -14.02716 -13.96502 -13.70877 -13.41362 -13.24061 -13.01625 -12.54127 -12.46307 -12.16785 -12.08554 -12.05432 -11.89215 -11.62021 -11.33191 -11.25395 -10.97433 -10.76796 -10.58619 -9.76535 -9.69087 -9.20169 -8.88559 -8.85562 -8.75687 -8.33573 -8.10931 -7.72707 -6.77999 -4.22347 0.82284 1.48114 1.61425 2.44298 2.72483 3.00744 3.06806 3.09836 3.30162 3.67018 3.80083 3.90223 3.98609 4.11446 4.26598 4.55468 4.84746 4.91659 5.02521 5.08078 5.17803 5.38342 5.49659 5.54975 5.58085 5.67590 5.76312 5.83795 5.99827 6.14199 6.34403 6.43128 6.46315 6.51990 6.53368 6.58736 6.66095 6.79057 6.98643 7.12066 7.17120 7.36988 7.73656 7.85587 7.86672 8.09664 8.69328 8.79814 9.55675 10.24406 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.005241 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.403476 B = 5341.693813 C = 5684.766302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.294 4.294 8 H 0.114 0.886 9 N -0.385 5.385 10 C 0.420 3.580 11 O -0.584 6.584 12 C 0.124 3.876 13 O -0.447 6.447 14 C -0.294 4.294 15 C 0.482 3.518 16 O -0.448 6.448 17 C -0.152 4.152 18 C -0.060 4.060 19 C -0.131 4.131 20 C -0.095 4.095 21 C -0.138 4.138 22 C -0.065 4.065 23 C 0.269 3.731 24 H 0.160 0.840 25 C 0.045 3.955 26 C -0.198 4.198 27 C -0.217 4.217 28 C -0.059 4.059 29 O -0.165 6.165 30 H 0.282 0.718 31 H 0.406 0.594 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -1.920 -1.333 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.165 4.165 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.421 4.421 8 H 0.132 0.868 9 N -0.099 5.099 10 C 0.210 3.790 11 O -0.472 6.472 12 C 0.071 3.929 13 O -0.249 6.249 14 C -0.301 4.301 15 C 0.360 3.640 16 O -0.323 6.323 17 C -0.153 4.153 18 C -0.079 4.079 19 C -0.149 4.149 20 C -0.113 4.113 21 C -0.156 4.156 22 C -0.084 4.084 23 C 0.164 3.836 24 H 0.177 0.823 25 C -0.007 4.007 26 C -0.218 4.218 27 C -0.236 4.236 28 C -0.127 4.127 29 O -0.060 6.060 30 H 0.093 0.907 31 H 0.259 0.741 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.711 -2.364 -1.768 10.149 hybrid contribution 0.608 1.018 0.075 1.188 sum -9.103 -1.346 -1.693 9.356 Atomic orbital electron populations 1.69433 1.06418 1.29308 1.43343 1.25496 0.95645 1.00222 0.95136 0.85734 0.79560 0.79575 0.78981 1.19755 1.20239 1.18842 1.19654 0.93834 0.80986 1.47658 0.86847 1.43366 1.13753 1.05490 1.47318 1.18355 0.88578 0.83749 0.88278 1.90676 1.22969 1.82166 1.51437 1.21220 0.93884 0.83563 0.94268 1.84726 1.43351 1.17763 1.79066 1.21800 0.97022 0.95743 1.15496 1.19329 0.86303 0.77233 0.81140 1.90611 1.88057 1.30490 1.23177 1.20497 0.94513 1.02345 0.97918 1.21589 0.98908 0.94008 0.93355 1.21167 0.92259 1.00787 1.00717 1.21360 0.98309 0.96161 0.95495 1.21077 0.97656 1.00393 0.96480 1.21342 0.91404 0.96538 0.99067 1.18883 0.89400 0.88036 0.87236 0.82307 1.21962 0.87505 1.00893 0.90324 1.21250 1.01411 1.04203 0.94911 1.21654 0.97538 1.06448 0.97966 1.23798 0.97884 1.01062 0.89952 1.84046 1.42025 1.59712 1.20168 0.90675 0.74071 0.84610 0.85394 0.85909 0.85737 0.85138 0.84057 0.84334 0.79110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.44 9.97 55.53 0.55 -18.89 16 2 C 0.04 1.03 5.14 -17.38 -0.09 0.94 16 3 Si 0.94 18.87 29.57 -169.99 -5.03 13.84 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.29 -7.54 9.65 -15.16 -0.15 -7.69 16 8 H 0.11 3.00 7.85 -52.49 -0.41 2.59 16 9 N -0.39 -9.59 2.79 -111.20 -0.31 -9.90 16 10 C 0.42 10.42 7.89 -12.74 -0.10 10.32 16 11 O -0.58 -15.73 17.59 5.23 0.09 -15.64 16 12 C 0.12 2.69 7.41 -36.79 -0.27 2.41 16 13 O -0.45 -8.41 13.55 -17.76 -0.24 -8.65 16 14 C -0.29 -6.22 4.17 -102.08 -0.43 -6.64 16 15 C 0.48 9.56 6.86 -32.45 -0.22 9.34 16 16 O -0.45 -9.75 17.13 5.15 0.09 -9.66 16 17 C -0.15 -2.52 5.88 -104.90 -0.62 -3.14 16 18 C -0.06 -0.92 9.24 -39.17 -0.36 -1.28 16 19 C -0.13 -1.63 10.03 -39.63 -0.40 -2.03 16 20 C -0.10 -1.04 10.04 -39.47 -0.40 -1.44 16 21 C -0.14 -1.59 10.03 -39.64 -0.40 -1.99 16 22 C -0.07 -0.93 9.60 -39.17 -0.38 -1.31 16 23 C 0.27 5.99 2.48 -69.88 -0.17 5.82 16 24 H 0.16 3.51 5.26 -51.93 -0.27 3.24 16 25 C 0.04 0.99 4.90 -35.62 -0.17 0.82 16 26 C -0.20 -3.95 10.58 -39.70 -0.42 -4.37 16 27 C -0.22 -3.87 10.91 -39.70 -0.43 -4.30 16 28 C -0.06 -1.08 12.09 29.41 0.36 -0.72 16 29 O -0.16 -3.72 10.65 5.69 0.06 -3.66 16 30 H 0.28 6.08 8.30 -40.82 -0.34 5.74 16 31 H 0.41 5.99 8.85 45.56 0.40 6.39 16 32 H 0.14 2.18 6.09 -52.49 -0.32 1.86 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.80 7.66 -52.49 -0.40 1.40 16 37 H 0.14 2.63 8.06 -52.49 -0.42 2.21 16 38 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.19 2.64 8.06 -52.48 -0.42 2.21 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -31.47 351.82 -6.80 -38.27 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -2.68 Total: 14.26 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -4.65 Total: -5.27 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: 0.24 Total: -28.79 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: 0.00 Total: -37.61 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.47 -6.80 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005483304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.551 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds