Wall clock time and date at job start Tue Mar 31 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30953 * 1 3 3 Si 1.86801 * 120.00613 * 2 1 4 4 H 1.48500 * 109.46788 * 270.00277 * 3 2 1 5 5 H 1.48502 * 109.46799 * 29.99695 * 3 2 1 6 6 H 1.48495 * 109.47599 * 150.00249 * 3 2 1 7 7 C 1.39701 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99541 * 190.37287 * 7 2 1 9 9 N 1.36003 * 120.00207 * 10.10109 * 7 2 1 10 10 C 1.34509 * 126.01765 * 197.60798 * 9 7 2 11 11 O 1.21651 * 124.95220 * 359.97089 * 10 9 7 12 12 C 1.47195 * 110.10024 * 179.97438 * 10 9 7 13 13 O 1.35356 * 125.41073 * 179.97438 * 12 10 9 14 14 C 1.35898 * 109.18208 * 359.97438 * 12 10 9 15 15 C 1.46168 * 126.67538 * 179.97438 * 14 12 10 16 16 O 1.21747 * 120.00498 * 295.83700 * 15 14 12 17 17 C 1.47881 * 119.99496 * 115.83923 * 15 14 12 18 18 C 1.39642 * 120.14724 * 354.12575 * 17 15 14 19 19 C 1.37938 * 119.84572 * 179.70015 * 18 17 15 20 20 C 1.38396 * 120.14532 * 0.57337 * 19 18 17 21 21 C 1.38382 * 120.30120 * 359.72417 * 20 19 18 22 22 C 1.37930 * 120.15577 * 359.97438 * 21 20 19 23 23 C 1.46775 * 126.01640 * 17.28990 * 9 7 2 24 24 H 1.08998 * 110.12805 * 299.16456 * 23 9 7 25 25 C 1.50697 * 110.12577 * 60.84465 * 23 9 7 26 26 C 1.34518 * 125.79008 * 219.66489 * 25 23 9 27 27 C 1.41385 * 106.83936 * 179.89142 * 26 25 23 28 28 C 1.34509 * 106.83952 * 0.36531 * 27 26 25 29 29 O 1.34306 * 125.78743 * 39.96642 * 25 23 9 30 30 H 0.97006 * 119.99463 * 359.97438 * 1 2 3 31 31 H 0.96692 * 113.99687 * 0.02562 * 13 12 10 32 32 H 1.07995 * 120.07986 * 359.97438 * 18 17 15 33 33 H 1.07994 * 119.92763 * 180.29789 * 19 18 17 34 34 H 1.07993 * 119.84421 * 179.69720 * 20 19 18 35 35 H 1.08001 * 119.92272 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.07873 * 179.97438 * 22 21 20 37 37 H 1.07997 * 126.58042 * 0.02562 * 26 25 23 38 38 H 1.08000 * 126.57746 * 180.12191 * 27 26 25 39 39 H 1.08008 * 125.78890 * 179.75504 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2437 1.6176 0.0000 4 1 2.4912 2.0463 -1.4001 5 1 1.4412 2.6526 0.7000 6 1 3.5413 1.4400 0.6999 7 6 2.0080 -1.2099 0.0005 8 1 3.0747 -1.2175 0.1690 9 7 1.3437 -2.3787 -0.2055 10 6 1.7985 -3.6096 0.0899 11 8 2.8815 -3.8514 0.5884 12 6 0.7948 -4.6215 -0.2781 13 8 0.9327 -5.9582 -0.1157 14 6 -0.2923 -4.0005 -0.8067 15 6 -1.5105 -4.6412 -1.2984 16 8 -1.4613 -5.3851 -2.2610 17 6 -2.8030 -4.3858 -0.6267 18 6 -2.8458 -3.6330 0.5486 19 6 -4.0555 -3.3933 1.1667 20 6 -5.2235 -3.9071 0.6309 21 6 -5.1874 -4.6592 -0.5301 22 6 -3.9854 -4.9013 -1.1618 23 6 0.0017 -2.5184 -0.7833 24 1 -0.7294 -1.9994 -0.1635 25 6 -0.0195 -1.9652 -2.1849 26 6 -1.0171 -1.2479 -2.7325 27 6 -0.6197 -0.9352 -4.0528 28 6 0.5933 -1.4870 -4.2358 29 8 0.9519 -2.1096 -3.1011 30 1 -0.4850 0.8401 0.0004 31 1 1.7756 -6.2216 0.2781 32 1 -1.9345 -3.2355 0.9703 33 1 -4.0907 -2.8072 2.0730 34 1 -6.1673 -3.7206 1.1215 35 1 -6.1026 -5.0576 -0.9426 36 1 -3.9586 -5.4888 -2.0676 37 1 -1.9428 -0.9635 -2.2545 38 1 -1.1838 -0.3662 -4.7770 39 1 1.1794 -1.4380 -5.1417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005483304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:09 Heat of formation + Delta-G solvation = -43.968027 kcal Electronic energy + Delta-G solvation = -29877.249296 eV Core-core repulsion = 25717.615988 eV Total energy + Delta-G solvation = -4159.633308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.098 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -43.50902 -42.00300 -40.65414 -39.08646 -38.66312 -37.43990 -35.16338 -33.88094 -32.92730 -31.93595 -31.77775 -30.98398 -27.88564 -26.94699 -25.61990 -23.63952 -23.10071 -22.56665 -22.07168 -21.65976 -20.40461 -19.62263 -18.98953 -18.41259 -17.93107 -17.44370 -16.87849 -16.78477 -16.63034 -16.51180 -15.95259 -15.80803 -15.61287 -15.20290 -15.11478 -14.90858 -14.61571 -14.44043 -14.16591 -14.07839 -13.64281 -13.61537 -13.53587 -13.42257 -13.01530 -12.97564 -12.66116 -12.55410 -12.17365 -11.98268 -11.56653 -11.29584 -10.72057 -10.60096 -10.19642 -9.94546 -9.90769 -9.77577 -9.27752 -8.60370 -6.16116 -0.47396 0.00012 0.46709 0.89287 1.31260 1.37714 1.41863 1.49977 1.79335 2.02010 2.12438 2.22526 2.50310 2.63162 2.89470 2.95093 2.99569 3.47410 3.84101 3.91141 3.97176 4.07698 4.23397 4.24920 4.31119 4.37263 4.51377 4.55607 4.72204 4.89559 4.94501 4.96234 5.10368 5.12388 5.19836 5.25294 5.43538 5.49101 5.49486 5.53808 5.72779 6.00206 6.14921 6.27234 6.35017 6.38555 6.78367 6.90437 7.65775 8.41350 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.005241 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.403476 B = 5341.693813 C = 5684.766302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.023 3.977 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.258 1.258 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.091 0.909 9 N -0.389 5.389 10 C 0.396 3.604 11 O -0.623 6.623 12 C 0.115 3.885 13 O -0.443 6.443 14 C -0.285 4.285 15 C 0.482 3.518 16 O -0.479 6.479 17 C -0.177 4.177 18 C -0.075 4.075 19 C -0.132 4.132 20 C -0.077 4.077 21 C -0.129 4.129 22 C -0.073 4.073 23 C 0.273 3.727 24 H 0.158 0.842 25 C 0.008 3.992 26 C -0.194 4.194 27 C -0.216 4.216 28 C -0.062 4.062 29 O -0.200 6.200 30 H 0.292 0.708 31 H 0.421 0.579 32 H 0.115 0.885 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.367 -0.313 -1.887 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.182 1.182 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.108 0.892 9 N -0.102 5.102 10 C 0.188 3.812 11 O -0.515 6.515 12 C 0.062 3.938 13 O -0.247 6.247 14 C -0.292 4.292 15 C 0.363 3.637 16 O -0.357 6.357 17 C -0.178 4.178 18 C -0.094 4.094 19 C -0.150 4.150 20 C -0.095 4.095 21 C -0.146 4.146 22 C -0.091 4.091 23 C 0.169 3.831 24 H 0.175 0.825 25 C -0.043 4.043 26 C -0.214 4.214 27 C -0.235 4.235 28 C -0.128 4.128 29 O -0.096 6.096 30 H 0.103 0.897 31 H 0.277 0.723 32 H 0.133 0.867 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.147 0.853 37 H 0.169 0.831 38 H 0.194 0.806 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -13.237 -0.753 -2.315 13.459 hybrid contribution 1.545 0.576 0.233 1.666 sum -11.692 -0.177 -2.082 11.877 Atomic orbital electron populations 1.69464 1.06868 1.30562 1.41090 1.26175 0.96547 1.02053 0.93808 0.84913 0.78449 0.76138 0.78925 1.19632 1.18221 1.19419 1.19642 0.93454 0.82345 1.50950 0.89168 1.43555 1.14641 1.05354 1.46630 1.18833 0.88949 0.84662 0.88768 1.90607 1.24542 1.82936 1.53419 1.20941 0.93348 0.84003 0.95486 1.84693 1.44591 1.16149 1.79262 1.22098 0.97504 0.95494 1.14061 1.19657 0.87126 0.76204 0.80723 1.90579 1.88532 1.31876 1.24680 1.20273 0.93466 1.05040 0.99060 1.21525 0.99618 0.94705 0.93510 1.21468 0.91616 1.00674 1.01214 1.21859 0.99268 0.93741 0.94596 1.21495 0.97670 0.99347 0.96124 1.21484 0.91707 0.96545 0.99385 1.18842 0.87795 0.88599 0.87821 0.82538 1.21974 0.88691 1.03167 0.90468 1.21534 1.01005 1.02911 0.95940 1.22078 0.97523 1.06311 0.97579 1.24754 0.98686 0.99577 0.89826 1.84016 1.42977 1.61029 1.21600 0.89671 0.72264 0.86686 0.83195 0.81701 0.82087 0.85290 0.83073 0.80572 0.75105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -38.57 9.97 21.78 0.22 -38.35 16 2 C 0.02 1.11 5.14 85.18 0.44 1.55 16 3 Si 0.99 38.36 29.57 68.60 2.03 40.39 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.34 -18.17 9.65 84.40 0.81 -17.35 16 8 H 0.09 5.13 7.85 -2.91 -0.02 5.11 16 9 N -0.39 -20.53 2.79 -624.12 -1.74 -22.27 16 10 C 0.40 21.08 7.89 86.64 0.68 21.77 16 11 O -0.62 -36.06 17.59 -4.19 -0.07 -36.14 16 12 C 0.12 5.33 7.41 24.08 0.18 5.51 16 13 O -0.44 -17.58 13.55 -86.46 -1.17 -18.75 16 14 C -0.28 -12.69 4.17 -18.22 -0.08 -12.76 16 15 C 0.48 19.85 6.86 26.89 0.18 20.04 16 16 O -0.48 -21.59 17.13 -4.50 -0.08 -21.66 16 17 C -0.18 -5.91 5.88 -20.05 -0.12 -6.03 16 18 C -0.08 -2.28 9.24 22.54 0.21 -2.07 16 19 C -0.13 -2.93 10.03 22.24 0.22 -2.71 16 20 C -0.08 -1.33 10.04 22.34 0.22 -1.11 16 21 C -0.13 -2.46 10.03 22.23 0.22 -2.24 16 22 C -0.07 -1.98 9.60 22.54 0.22 -1.76 16 23 C 0.27 12.71 2.48 43.58 0.11 12.82 16 24 H 0.16 7.22 5.26 -2.39 -0.01 7.21 16 25 C 0.01 0.34 4.90 24.83 0.12 0.46 16 26 C -0.19 -7.60 10.58 22.19 0.23 -7.37 16 27 C -0.22 -7.23 10.91 22.19 0.24 -6.99 16 28 C -0.06 -2.17 12.09 66.97 0.81 -1.36 16 29 O -0.20 -9.20 10.65 -2.54 -0.03 -9.22 16 30 H 0.29 12.16 8.30 -92.70 -0.77 11.39 16 31 H 0.42 13.33 8.85 -74.06 -0.66 12.68 16 32 H 0.12 3.89 6.09 -2.91 -0.02 3.87 16 33 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.13 3.46 7.66 -2.91 -0.02 3.44 16 37 H 0.15 5.46 8.06 -2.91 -0.02 5.44 16 38 H 0.18 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.23 5.78 8.06 -2.91 -0.02 5.75 16 Total: -1.00 -72.68 351.82 4.35 -68.33 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.48 Total: 37.30 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 4.72 Total: 0.39 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -1.52 Total: -60.62 kcal Atomic # 8 Polarization: -84.43 SS G_CDS: -1.35 Total: -85.78 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -72.68 4.35 -68.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005483304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.359 kcal (2) G-P(sol) polarization free energy of solvation -72.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds