Wall clock time and date at job start Tue Mar 31 2020 06:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30962 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.46937 * 269.99850 * 3 2 1 5 5 H 1.48499 * 109.46847 * 29.99944 * 3 2 1 6 6 H 1.48499 * 109.46892 * 150.00334 * 3 2 1 7 7 C 1.39695 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99802 * 184.40800 * 7 2 1 9 9 N 1.36016 * 120.00034 * 4.40692 * 7 2 1 10 10 C 1.34515 * 126.01409 * 155.98232 * 9 7 2 11 11 O 1.21647 * 124.95036 * 0.06061 * 10 9 7 12 12 C 1.47197 * 110.09584 * 180.02562 * 10 9 7 13 13 O 1.35348 * 125.40905 * 179.97438 * 12 10 9 14 14 C 1.35897 * 109.18157 * 0.02562 * 12 10 9 15 15 C 1.46167 * 126.67163 * 180.02562 * 14 12 10 16 16 O 1.21749 * 119.99738 * 67.00268 * 15 14 12 17 17 C 1.47872 * 120.00115 * 246.99425 * 15 14 12 18 18 C 1.39643 * 120.14793 * 355.83319 * 17 15 14 19 19 C 1.37925 * 119.85005 * 179.76606 * 18 17 15 20 20 C 1.38393 * 120.14766 * 0.51482 * 19 18 17 21 21 C 1.38383 * 120.30090 * 359.74539 * 20 19 18 22 22 C 1.37931 * 120.15016 * 359.97438 * 21 20 19 23 23 C 1.46763 * 126.01724 * 336.01029 * 9 7 2 24 24 H 1.08997 * 110.13241 * 60.75097 * 23 9 7 25 25 C 1.50706 * 110.12378 * 299.13705 * 23 9 7 26 26 C 1.34519 * 125.78730 * 136.59616 * 25 23 9 27 27 C 1.41380 * 106.83855 * 179.73381 * 26 25 23 28 28 C 1.34516 * 106.84446 * 0.02562 * 27 26 25 29 29 O 1.34298 * 125.78940 * 316.28588 * 25 23 9 30 30 H 0.96996 * 119.99469 * 0.02562 * 1 2 3 31 31 H 0.96705 * 113.99858 * 0.03569 * 13 12 10 32 32 H 1.08004 * 120.07603 * 0.03395 * 18 17 15 33 33 H 1.08006 * 119.92909 * 180.25449 * 19 18 17 34 34 H 1.07998 * 119.85009 * 179.71667 * 20 19 18 35 35 H 1.08003 * 119.92885 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.07518 * 179.97438 * 22 21 20 37 37 H 1.07998 * 126.58034 * 359.76748 * 26 25 23 38 38 H 1.08000 * 126.58018 * 179.97438 * 27 26 25 39 39 H 1.07998 * 125.79040 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 2.4912 2.0463 -1.4001 5 1 1.4411 2.6526 0.7000 6 1 3.5412 1.4400 0.7000 7 6 2.0080 -1.2098 -0.0005 8 1 3.0856 -1.2113 0.0713 9 7 1.3309 -2.3860 -0.0916 10 6 1.8260 -3.5504 -0.5481 11 8 2.9633 -3.7154 -0.9471 12 6 0.7914 -4.5959 -0.4937 13 8 0.9560 -5.8830 -0.8787 14 6 -0.3558 -4.0634 0.0035 15 6 -1.6208 -4.7630 0.2201 16 8 -1.6974 -5.6342 1.0671 17 6 -2.8076 -4.4124 -0.5895 18 6 -2.7480 -3.3557 -1.5004 19 6 -3.8571 -3.0372 -2.2558 20 6 -5.0305 -3.7553 -2.1049 21 6 -5.0981 -4.8002 -1.2001 22 6 -3.9946 -5.1331 -0.4425 23 6 -0.0687 -2.6078 0.2904 24 1 -0.7250 -1.9714 -0.3031 25 6 -0.2573 -2.3209 1.7578 26 6 -1.2817 -1.6386 2.3006 27 6 -1.0628 -1.6134 3.6971 28 6 0.0825 -2.2813 3.9243 29 8 0.5657 -2.7080 2.7460 30 1 -0.4849 0.8401 -0.0004 31 1 1.8424 -6.0844 -1.2088 32 1 -1.8341 -2.7919 -1.6163 33 1 -3.8111 -2.2227 -2.9637 34 1 -5.8974 -3.4988 -2.6956 35 1 -6.0170 -5.3563 -1.0869 36 1 -4.0489 -5.9485 0.2636 37 1 -2.1123 -1.1956 1.7712 38 1 -1.6936 -1.1467 4.4392 39 1 0.5364 -2.4466 4.8902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005483633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:36 Heat of formation + Delta-G solvation = -23.459426 kcal Electronic energy + Delta-G solvation = -29837.168897 eV Core-core repulsion = 25678.424909 eV Total energy + Delta-G solvation = -4158.743989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.098 amu Computer time = 3.78 seconds Orbital eigenvalues (eV) -41.88624 -40.32184 -39.27491 -37.74678 -37.05109 -35.54958 -33.34673 -32.26973 -31.49046 -30.85326 -30.34158 -29.36470 -26.17108 -25.25816 -24.12655 -22.48278 -21.76253 -21.00052 -20.40668 -20.06071 -18.92212 -17.81938 -17.30202 -17.06631 -16.33827 -15.87703 -15.45493 -15.20884 -15.12548 -14.86662 -14.33211 -14.23935 -14.02180 -13.94373 -13.77633 -13.43633 -13.21377 -13.01011 -12.54778 -12.46467 -12.15567 -12.06350 -12.01077 -11.86745 -11.62191 -11.35396 -11.20860 -10.96552 -10.80572 -10.58537 -9.72072 -9.62427 -9.15605 -8.89259 -8.86389 -8.77125 -8.31314 -8.10100 -7.69327 -6.76512 -4.25903 0.81924 1.47513 1.64025 2.47552 2.69993 3.00900 3.06590 3.10321 3.34484 3.70281 3.81179 3.90912 3.98478 4.11225 4.27117 4.57058 4.81071 4.90905 5.02111 5.09642 5.17364 5.41393 5.49688 5.54653 5.59613 5.71429 5.79745 5.84210 5.99443 6.13301 6.34573 6.45711 6.46832 6.51490 6.56382 6.59449 6.70148 6.82621 6.98201 7.12645 7.21923 7.42223 7.73899 7.84793 7.90195 8.10930 8.69062 8.79588 9.55994 10.26010 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.005137 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.827074 B = 5449.634677 C = 5647.539488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.044 3.956 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.294 4.294 8 H 0.111 0.889 9 N -0.389 5.389 10 C 0.426 3.574 11 O -0.582 6.582 12 C 0.119 3.881 13 O -0.448 6.448 14 C -0.291 4.291 15 C 0.482 3.518 16 O -0.447 6.447 17 C -0.152 4.152 18 C -0.062 4.062 19 C -0.132 4.132 20 C -0.095 4.095 21 C -0.138 4.138 22 C -0.065 4.065 23 C 0.269 3.731 24 H 0.159 0.841 25 C 0.045 3.955 26 C -0.191 4.191 27 C -0.218 4.218 28 C -0.059 4.059 29 O -0.167 6.167 30 H 0.282 0.718 31 H 0.405 0.595 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 -2.128 -0.731 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.421 4.421 8 H 0.129 0.871 9 N -0.104 5.104 10 C 0.217 3.783 11 O -0.470 6.470 12 C 0.066 3.934 13 O -0.250 6.250 14 C -0.297 4.297 15 C 0.360 3.640 16 O -0.322 6.322 17 C -0.153 4.153 18 C -0.080 4.080 19 C -0.150 4.150 20 C -0.113 4.113 21 C -0.156 4.156 22 C -0.084 4.084 23 C 0.164 3.836 24 H 0.176 0.824 25 C -0.006 4.006 26 C -0.211 4.211 27 C -0.237 4.237 28 C -0.128 4.128 29 O -0.062 6.062 30 H 0.093 0.907 31 H 0.259 0.741 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.772 -2.643 -0.335 10.129 hybrid contribution 0.637 1.023 0.019 1.206 sum -9.135 -1.619 -0.316 9.283 Atomic orbital electron populations 1.69457 1.06361 1.29174 1.43877 1.25571 0.95744 1.00204 0.94925 0.85698 0.79451 0.79490 0.78935 1.19641 1.20318 1.18992 1.19618 0.92870 0.80321 1.49251 0.87130 1.43355 1.09579 1.08391 1.49032 1.18408 0.88309 0.84415 0.87195 1.90676 1.19009 1.82573 1.54710 1.21188 0.94167 0.84338 0.93681 1.84721 1.38781 1.22560 1.78947 1.21867 0.94872 0.97222 1.15786 1.19346 0.85523 0.79454 0.79667 1.90612 1.85450 1.27330 1.28817 1.20501 0.95287 0.99095 1.00417 1.21633 0.99175 0.94533 0.92624 1.21169 0.93015 1.00498 1.00282 1.21364 0.97776 0.94933 0.97248 1.21080 0.98484 0.98550 0.97505 1.21346 0.91538 0.98138 0.97343 1.19013 0.87761 0.89376 0.87426 0.82450 1.21909 0.90397 0.99528 0.88786 1.21233 1.01690 1.04810 0.93367 1.21660 0.99447 1.06032 0.96549 1.23774 0.97152 1.03368 0.88460 1.84028 1.45972 1.61485 1.14727 0.90730 0.74085 0.84496 0.85383 0.85898 0.85721 0.85116 0.84042 0.84405 0.79182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.40 9.59 55.53 0.53 -18.87 16 2 C 0.04 1.03 5.40 -17.38 -0.09 0.93 16 3 Si 0.94 18.76 29.56 -169.99 -5.02 13.74 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.29 -7.52 9.58 -15.15 -0.15 -7.67 16 8 H 0.11 2.92 7.85 -52.49 -0.41 2.51 16 9 N -0.39 -9.69 2.79 -111.20 -0.31 -10.00 16 10 C 0.43 10.58 7.89 -12.74 -0.10 10.48 16 11 O -0.58 -15.64 17.60 5.23 0.09 -15.54 16 12 C 0.12 2.59 7.41 -36.78 -0.27 2.32 16 13 O -0.45 -8.42 13.55 -17.74 -0.24 -8.67 16 14 C -0.29 -6.17 4.29 -102.08 -0.44 -6.61 16 15 C 0.48 9.60 6.87 -32.46 -0.22 9.38 16 16 O -0.45 -9.74 17.13 5.15 0.09 -9.66 16 17 C -0.15 -2.53 5.88 -104.91 -0.62 -3.15 16 18 C -0.06 -0.94 9.36 -39.17 -0.37 -1.31 16 19 C -0.13 -1.64 10.03 -39.64 -0.40 -2.04 16 20 C -0.10 -1.04 10.04 -39.47 -0.40 -1.44 16 21 C -0.14 -1.59 10.03 -39.64 -0.40 -1.99 16 22 C -0.07 -0.94 9.60 -39.17 -0.38 -1.31 16 23 C 0.27 5.99 2.45 -69.89 -0.17 5.82 16 24 H 0.16 3.46 4.82 -51.93 -0.25 3.21 16 25 C 0.05 1.01 5.07 -35.62 -0.18 0.83 16 26 C -0.19 -3.86 10.33 -39.70 -0.41 -4.27 16 27 C -0.22 -3.92 10.91 -39.70 -0.43 -4.36 16 28 C -0.06 -1.10 12.09 29.42 0.36 -0.74 16 29 O -0.17 -3.79 10.65 5.71 0.06 -3.73 16 30 H 0.28 6.01 8.30 -40.82 -0.34 5.67 16 31 H 0.41 5.98 8.85 45.56 0.40 6.39 16 32 H 0.14 2.23 5.55 -52.48 -0.29 1.94 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.13 1.80 7.66 -52.48 -0.40 1.40 16 37 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 38 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.19 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -31.43 350.78 -6.80 -38.23 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -2.62 Total: 14.33 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.66 Total: -5.12 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: 0.22 Total: -28.87 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: 0.00 Total: -37.60 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.43 -6.80 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005483633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.772 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.78 seconds