Wall clock time and date at job start Tue Mar 31 2020 05:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00020 * 2 1 4 4 O 1.20825 * 119.99742 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00210 * 179.97438 * 3 2 1 6 6 S 1.81403 * 109.47231 * 180.02562 * 5 3 2 7 7 C 1.76201 * 102.99951 * 180.02562 * 6 5 3 8 8 S 1.73681 * 121.78871 * 0.24575 * 7 6 5 9 9 C 1.68563 * 96.21827 * 180.12016 * 8 7 6 10 10 O 1.21913 * 122.64402 * 179.97438 * 9 8 7 11 11 S 1.68563 * 114.71804 * 359.65877 * 9 8 7 12 12 C 1.29327 * 121.78918 * 180.02562 * 7 6 5 13 13 S 1.76191 * 121.78825 * 359.96869 * 12 7 6 14 14 C 1.81406 * 103.00082 * 180.02562 * 13 12 7 15 15 C 1.50701 * 109.47219 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99892 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00269 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00116 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47058 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47192 * 120.00353 * 19 17 15 22 22 H 1.48495 * 109.47350 * 240.00253 * 19 17 15 23 23 H 1.08994 * 109.47700 * 300.00273 * 1 2 3 24 24 H 1.09000 * 109.46945 * 60.00404 * 1 2 3 25 25 H 1.09001 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47219 * 59.99546 * 5 3 2 27 27 H 1.09007 * 109.46942 * 300.00172 * 5 3 2 28 28 H 1.08998 * 109.46833 * 299.99856 * 14 13 12 29 29 H 1.09005 * 109.46859 * 59.99577 * 14 13 12 30 30 H 0.97001 * 120.00332 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 16 4.0806 3.0145 0.0012 7 6 5.8394 2.9078 0.0011 8 16 6.6633 1.3789 -0.0059 9 6 8.2250 2.0130 0.0009 10 8 9.2206 1.3093 -0.0006 11 16 8.3021 3.6969 0.0015 12 6 6.5860 3.9639 0.0019 13 16 5.8989 5.5863 0.0024 14 6 7.3674 6.6513 0.0028 15 6 6.9399 8.0964 0.0026 16 1 5.8898 8.3489 0.0028 17 6 7.8893 9.0962 0.0034 18 7 9.1681 8.7887 0.0037 19 14 7.3594 10.8874 0.0039 20 1 5.8765 10.9649 0.0040 21 1 7.8899 11.5602 1.2168 22 1 7.8907 11.5612 -1.2081 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.9564 0.7806 -0.8891 27 1 3.9557 0.7809 0.8909 28 1 7.9631 6.4484 0.8927 29 1 7.9632 6.4489 -0.8873 30 1 9.8360 9.4921 0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005510939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:07 Heat of formation + Delta-G solvation = -94.529383 kcal Electronic energy + Delta-G solvation = -18716.815417 eV Core-core repulsion = 15369.309876 eV Total energy + Delta-G solvation = -3347.505541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 337.961 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76956 -38.94124 -36.90383 -35.00734 -33.37699 -31.24714 -28.89916 -27.68720 -26.56227 -24.14576 -22.82028 -21.59438 -19.28732 -18.92192 -18.09233 -17.53684 -17.04682 -16.69633 -16.17558 -15.78510 -15.75874 -15.42231 -14.78760 -14.57853 -14.26207 -13.77493 -13.44169 -13.35231 -12.96865 -12.61374 -12.48498 -12.34790 -12.20633 -11.74558 -11.20636 -11.02966 -11.00454 -10.92448 -10.74690 -10.24108 -9.86873 -9.52627 -9.48673 -9.30508 -8.97928 -8.77405 -7.84598 -6.91524 -6.37606 -4.45913 0.38050 0.66513 0.75261 0.90601 1.12415 1.34573 1.76055 1.95299 2.06689 2.37878 2.45977 3.16163 3.24232 3.28284 3.41351 4.20881 4.30299 4.48857 4.73357 4.80636 4.83146 5.00010 5.15680 5.35538 5.90716 6.32854 6.72800 6.77680 7.26802 7.52340 7.71485 8.55266 9.19702 10.73064 Molecular weight = 337.96amu Principal moments of inertia in cm(-1) A = 0.012763 B = 0.003565 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.286891 B = 7852.020875 C =10019.556894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.485 3.515 4 O -0.483 6.483 5 C -0.154 4.154 6 S 0.078 5.922 7 C -0.216 4.216 8 S 0.058 5.942 9 C 0.237 3.763 10 O -0.402 6.402 11 S 0.140 5.860 12 C -0.138 4.138 13 S -0.037 6.037 14 C 0.052 3.948 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.072 3.928 18 N -0.884 5.884 19 Si 0.910 3.090 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.456 -17.234 -0.008 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.326 3.674 4 O -0.369 6.369 5 C -0.303 4.303 6 S 0.314 5.686 7 C -0.465 4.465 8 S 0.292 5.708 9 C -0.103 4.103 10 O -0.291 6.291 11 S 0.377 5.623 12 C -0.384 4.384 13 S 0.208 5.792 14 C -0.096 4.096 15 C -0.564 4.564 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.520 5.520 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.224 -16.298 -0.015 20.373 hybrid contribution 1.365 -0.210 0.010 1.381 sum -10.859 -16.509 -0.005 19.760 Atomic orbital electron populations 1.23355 0.75415 1.04000 1.03016 1.86475 1.23975 1.32421 1.84167 1.22345 0.89945 0.81982 0.73151 1.90760 1.66324 1.35876 1.43924 1.23552 0.93104 1.03704 1.09979 1.86504 0.89447 1.00478 1.92203 1.23583 1.04141 0.97207 1.21607 1.83548 0.99815 1.08172 1.79224 1.26952 0.98315 0.99638 0.85441 1.90869 1.33629 1.57032 1.47607 1.84879 1.00238 1.00767 1.76399 1.24368 0.99420 1.05025 1.09586 1.85695 1.18692 0.88087 1.86702 1.21712 0.89909 0.95882 1.02052 1.20536 0.93994 0.87501 1.54356 0.90969 1.24944 0.94573 0.99820 0.94039 1.69952 1.00030 1.33915 1.48121 0.86232 0.79177 0.82971 0.77968 1.19230 1.20512 1.20507 0.91508 0.91516 0.87755 0.84908 0.84902 0.92828 0.92829 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.13 10.57 -39.26 -0.41 -3.55 16 3 C 0.49 5.19 7.98 36.00 0.29 5.47 16 4 O -0.48 -6.62 15.61 -18.75 -0.29 -6.91 16 5 C -0.15 -1.49 5.34 36.00 0.19 -1.30 16 6 S 0.08 1.07 19.88 -107.50 -2.14 -1.06 16 7 C -0.22 -3.24 6.31 29.48 0.19 -3.05 16 8 S 0.06 0.75 20.98 -101.69 -2.13 -1.38 16 9 C 0.24 3.78 7.31 101.05 0.74 4.52 16 10 O -0.40 -7.12 18.02 5.00 0.09 -7.03 16 11 S 0.14 2.40 20.98 -101.69 -2.13 0.27 16 12 C -0.14 -2.39 6.31 29.48 0.19 -2.20 16 13 S -0.04 -0.74 20.66 -107.50 -2.22 -2.96 16 14 C 0.05 1.24 4.50 36.01 0.16 1.40 16 15 C -0.52 -13.64 9.13 -34.44 -0.31 -13.95 16 16 H 0.07 1.86 7.71 -52.49 -0.40 1.45 16 17 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 18 N -0.88 -24.20 13.29 55.43 0.74 -23.46 16 19 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 24 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 25 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.13 1.04 8.03 -51.92 -0.42 0.62 16 27 H 0.13 1.04 8.04 -51.92 -0.42 0.62 16 28 H 0.05 1.32 8.03 -51.92 -0.42 0.90 16 29 H 0.05 1.32 8.03 -51.92 -0.42 0.90 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 326.27 15.07 4.92 4.92 Total: -1.00 -29.28 326.27 -8.68 -37.96 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: -2.48 Total: -5.93 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 2.41 Total: -6.03 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.74 Total: -23.46 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.62 Total: -17.49 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -8.62 Total: -5.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.28 -8.68 -37.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005510939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.571 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds