Wall clock time and date at job start Tue Mar 31 2020 05:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00322 * 2 1 4 4 C 1.50700 * 109.46755 * 293.95533 * 3 2 1 5 5 H 1.08003 * 120.00545 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99616 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00136 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99690 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47245 * 59.99545 * 8 6 4 10 10 H 1.48503 * 109.46658 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46698 * 299.99389 * 8 6 4 12 12 C 1.46904 * 111.00196 * 123.95586 * 2 1 3 13 13 C 1.50706 * 109.47000 * 66.03994 * 12 2 1 14 14 O 1.21286 * 120.00012 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99698 * 180.27460 * 13 12 2 16 16 C 1.39926 * 119.99715 * 175.26912 * 15 13 12 17 17 C 1.38895 * 120.06902 * 35.27655 * 16 15 13 18 18 C 1.38092 * 119.92570 * 179.97438 * 17 16 15 19 19 C 1.38300 * 120.07356 * 359.97438 * 18 17 16 20 20 N 1.48019 * 119.92803 * 180.02562 * 19 18 17 21 21 O 1.21797 * 120.00507 * 0.02562 * 20 19 18 22 22 O 1.21802 * 119.99698 * 179.97438 * 20 19 18 23 23 C 1.38258 * 120.14245 * 359.97438 * 19 18 17 24 24 C 1.38138 * 120.07120 * 359.76665 * 23 19 18 25 25 N 1.48019 * 120.04151 * 180.27780 * 24 23 19 26 26 O 1.21796 * 119.99609 * 5.63054 * 25 24 23 27 27 O 1.21801 * 120.00210 * 185.62643 * 25 24 23 28 28 H 1.08998 * 109.46911 * 296.04555 * 1 2 3 29 29 H 1.09003 * 109.47262 * 56.04464 * 1 2 3 30 30 H 1.09001 * 109.47360 * 176.04860 * 1 2 3 31 31 H 1.08990 * 109.47001 * 53.95488 * 3 2 1 32 32 H 1.09006 * 109.46909 * 173.95782 * 3 2 1 33 33 H 0.97004 * 120.00432 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46840 * 306.04518 * 12 2 1 35 35 H 1.09002 * 109.47196 * 186.04179 * 12 2 1 36 36 H 0.97002 * 119.99943 * 355.27618 * 15 13 12 37 37 H 1.08003 * 120.03570 * 0.02562 * 17 16 15 38 38 H 1.07999 * 119.95936 * 179.97438 * 18 17 16 39 39 H 1.08001 * 119.96635 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0278 3.3491 -1.5289 7 7 2.7129 4.0014 -0.6155 8 14 1.5827 4.1869 -3.1382 9 1 0.1054 4.2243 -3.2847 10 1 2.1151 5.5732 -3.1382 11 1 2.1735 3.4292 -4.2705 12 6 1.9955 -0.7660 1.1376 13 6 1.6368 -2.2205 0.9728 14 8 1.0052 -2.5833 0.0030 15 7 2.0136 -3.1173 1.9058 16 6 1.5969 -4.4492 1.8044 17 6 1.4710 -5.0459 0.5565 18 6 1.0600 -6.3607 0.4599 19 6 0.7745 -7.0834 1.6040 20 7 0.3348 -8.4927 1.4968 21 8 0.2252 -9.0149 0.4019 22 8 0.0834 -9.1305 2.5036 23 6 0.8999 -6.4926 2.8477 24 6 1.3156 -5.1794 2.9515 25 7 1.4555 -4.5495 4.2836 26 8 1.3039 -5.2163 5.2915 27 8 1.7223 -3.3643 4.3719 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 1.5612 1.9273 0.8308 32 1 3.0798 1.3443 0.1082 33 1 2.9876 4.9176 -0.7774 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6612 1.1755 36 1 2.5735 -2.8393 2.6475 37 1 1.6950 -4.4825 -0.3372 38 1 0.9616 -6.8252 -0.5101 39 1 0.6765 -7.0597 3.7393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005913383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:11 Heat of formation + Delta-G solvation = 16.161996 kcal Electronic energy + Delta-G solvation = -28604.593401 eV Core-core repulsion = 24134.436925 eV Total energy + Delta-G solvation = -4470.156476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -43.08423 -42.60399 -41.17157 -39.47431 -37.31158 -37.08285 -36.43011 -35.45255 -32.94731 -32.68582 -31.86963 -28.81289 -27.44570 -27.23094 -26.52086 -24.48252 -23.95877 -22.99218 -21.43729 -20.67276 -20.47608 -19.50516 -18.98129 -18.75868 -18.33440 -18.17092 -17.99836 -17.53596 -16.48890 -16.28338 -15.70563 -15.27543 -14.85756 -14.67842 -14.48434 -14.19521 -14.04274 -13.72307 -13.23542 -12.69970 -12.20420 -12.09752 -12.05409 -11.99694 -11.81571 -11.71261 -11.67861 -11.62232 -11.42341 -11.28184 -11.01468 -10.89448 -10.74252 -10.63200 -10.19980 -9.89461 -9.50476 -9.35964 -8.55087 -7.52672 -6.14513 -4.16228 -1.05135 -0.78173 0.42168 0.45299 0.67759 0.88704 2.00119 2.08401 2.42226 3.27220 3.29423 3.31484 3.34495 3.55688 3.60705 3.73456 4.08969 4.33037 4.52460 4.62675 4.71569 4.76047 4.85846 5.20159 5.22215 5.38481 5.49869 5.58231 5.67740 5.78766 6.06037 6.17350 6.57151 6.69563 7.00058 7.03159 7.08689 7.11342 7.56368 7.63217 7.85940 7.97701 8.33108 8.90579 9.48441 10.96338 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002383 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.431304 B =11745.817446 C =12951.122825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.524 5.524 3 C 0.194 3.806 4 C -0.510 4.510 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.039 3.961 13 C 0.520 3.480 14 O -0.482 6.482 15 N -0.669 5.669 16 C 0.283 3.717 17 C -0.126 4.126 18 C 0.014 3.986 19 C -0.073 4.073 20 N 0.033 4.967 21 O -0.146 6.146 22 O -0.151 6.151 23 C 0.031 3.969 24 C -0.089 4.089 25 N 0.038 4.962 26 O -0.136 6.136 27 O -0.158 6.158 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.060 0.940 31 H -0.004 1.004 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.430 0.570 37 H 0.188 0.812 38 H 0.176 0.824 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 -20.756 7.612 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C 0.070 3.930 4 C -0.549 4.549 5 H 0.083 0.917 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.092 4.092 13 C 0.310 3.690 14 O -0.352 6.352 15 N -0.320 5.320 16 C 0.179 3.821 17 C -0.148 4.148 18 C -0.006 4.006 19 C -0.158 4.158 20 N 0.555 4.445 21 O -0.363 6.363 22 O -0.368 6.368 23 C 0.011 3.989 24 C -0.177 4.177 25 N 0.558 4.442 26 O -0.356 6.356 27 O -0.368 6.368 28 H 0.028 0.972 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.014 0.986 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.274 0.726 37 H 0.205 0.795 38 H 0.193 0.807 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.829 -20.430 5.913 21.285 hybrid contribution -0.252 0.852 0.736 1.154 sum -1.081 -19.578 6.649 20.704 Atomic orbital electron populations 1.22399 0.87850 1.00962 1.00648 1.61951 1.08001 1.17871 1.37034 1.19814 0.95473 0.80463 0.97295 1.21064 1.35312 0.96976 1.01548 0.91716 1.24977 0.95140 0.97254 0.97123 1.69929 1.38060 1.11624 1.34116 0.86520 0.78782 0.78317 0.83572 1.20215 1.21289 1.20091 1.21997 1.02977 0.87723 0.96538 1.21794 0.77644 0.88853 0.80710 1.90679 1.36393 1.79937 1.28241 1.44681 1.51209 1.05091 1.30974 1.17941 0.87540 0.84978 0.91648 1.21601 1.01926 0.93510 0.97753 1.21405 0.87522 0.92696 0.98971 1.20727 1.15230 0.84542 0.95328 1.43278 0.98294 1.02137 1.00826 1.94586 1.55928 1.71223 1.14557 1.94593 1.52697 1.62392 1.27077 1.20454 0.87994 0.91495 0.98987 1.20604 1.18470 0.95491 0.83089 1.43156 0.98184 1.00843 1.02016 1.94600 1.53022 1.62993 1.24971 1.94478 1.51290 0.98231 1.92841 0.97197 0.90244 0.92159 0.98613 0.94930 0.92713 0.91406 0.87219 0.72571 0.79453 0.80674 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.03 60.06 0.54 1.10 16 2 N -0.52 -10.33 4.49 -245.82 -1.10 -11.44 16 3 C 0.19 4.65 4.72 -4.98 -0.02 4.62 16 4 C -0.51 -13.66 8.46 -34.44 -0.29 -13.95 16 5 H 0.06 1.73 7.12 -52.48 -0.37 1.36 16 6 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -25.49 13.29 55.43 0.74 -24.75 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.04 0.57 5.45 -4.97 -0.03 0.54 16 13 C 0.52 6.62 7.40 -10.98 -0.08 6.54 16 14 O -0.48 -7.26 11.76 5.55 0.07 -7.19 16 15 N -0.67 -6.42 4.56 -9.86 -0.04 -6.46 16 16 C 0.28 2.53 6.28 -83.69 -0.53 2.01 16 17 C -0.13 -1.01 8.69 -39.39 -0.34 -1.35 16 18 C 0.01 0.10 9.55 -39.61 -0.38 -0.28 16 19 C -0.07 -0.58 6.85 -79.92 -0.55 -1.13 16 20 N 0.03 0.32 4.45 33.98 0.15 0.47 16 21 O -0.15 -1.51 18.44 -29.46 -0.54 -2.05 16 22 O -0.15 -1.60 18.44 -29.46 -0.54 -2.15 16 23 C 0.03 0.24 9.06 -39.61 -0.36 -0.12 16 24 C -0.09 -0.78 6.86 -79.75 -0.55 -1.32 16 25 N 0.04 0.39 4.45 34.06 0.15 0.54 16 26 O -0.14 -1.46 18.46 -29.46 -0.54 -2.00 16 27 O -0.16 -1.71 16.03 -29.46 -0.47 -2.18 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 30 H 0.06 1.06 5.88 -51.93 -0.31 0.75 16 31 H 0.00 -0.10 8.12 -51.93 -0.42 -0.52 16 32 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 35 H 0.11 1.41 7.93 -51.93 -0.41 1.00 16 36 H 0.43 3.48 6.51 -40.82 -0.27 3.22 16 37 H 0.19 1.62 6.25 -52.48 -0.33 1.29 16 38 H 0.18 0.83 7.60 -52.49 -0.40 0.43 16 39 H 0.18 1.21 7.17 -52.49 -0.38 0.83 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -30.77 348.90 -8.21 -38.98 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.62 Total: -1.06 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.68 Total: -1.90 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.11 Total: -41.63 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -2.04 Total: -15.58 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.77 -8.21 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005913383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.147 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds