Wall clock time and date at job start Tue Mar 31 2020 05:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00322 * 2 1 4 4 C 1.50700 * 109.46755 * 293.95533 * 3 2 1 5 5 H 1.08003 * 120.00545 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99616 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00136 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99690 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47245 * 59.99545 * 8 6 4 10 10 H 1.48503 * 109.46658 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46698 * 299.99389 * 8 6 4 12 12 C 1.46904 * 111.00196 * 123.95586 * 2 1 3 13 13 C 1.50706 * 109.47000 * 66.03994 * 12 2 1 14 14 O 1.21286 * 120.00012 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99698 * 180.27460 * 13 12 2 16 16 C 1.39926 * 119.99715 * 175.26912 * 15 13 12 17 17 C 1.38895 * 120.06902 * 35.27655 * 16 15 13 18 18 C 1.38092 * 119.92570 * 179.97438 * 17 16 15 19 19 C 1.38300 * 120.07356 * 359.97438 * 18 17 16 20 20 N 1.48019 * 119.92803 * 180.02562 * 19 18 17 21 21 O 1.21797 * 120.00507 * 0.02562 * 20 19 18 22 22 O 1.21802 * 119.99698 * 179.97438 * 20 19 18 23 23 C 1.38258 * 120.14245 * 359.97438 * 19 18 17 24 24 C 1.38138 * 120.07120 * 359.76665 * 23 19 18 25 25 N 1.48019 * 120.04151 * 180.27780 * 24 23 19 26 26 O 1.21796 * 119.99609 * 5.63054 * 25 24 23 27 27 O 1.21801 * 120.00210 * 185.62643 * 25 24 23 28 28 H 1.08998 * 109.46911 * 296.04555 * 1 2 3 29 29 H 1.09003 * 109.47262 * 56.04464 * 1 2 3 30 30 H 1.09001 * 109.47360 * 176.04860 * 1 2 3 31 31 H 1.08990 * 109.47001 * 53.95488 * 3 2 1 32 32 H 1.09006 * 109.46909 * 173.95782 * 3 2 1 33 33 H 0.97004 * 120.00432 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46840 * 306.04518 * 12 2 1 35 35 H 1.09002 * 109.47196 * 186.04179 * 12 2 1 36 36 H 0.97002 * 119.99943 * 355.27618 * 15 13 12 37 37 H 1.08003 * 120.03570 * 0.02562 * 17 16 15 38 38 H 1.07999 * 119.95936 * 179.97438 * 18 17 16 39 39 H 1.08001 * 119.96635 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0278 3.3491 -1.5289 7 7 2.7129 4.0014 -0.6155 8 14 1.5827 4.1869 -3.1382 9 1 0.1054 4.2243 -3.2847 10 1 2.1151 5.5732 -3.1382 11 1 2.1735 3.4292 -4.2705 12 6 1.9955 -0.7660 1.1376 13 6 1.6368 -2.2205 0.9728 14 8 1.0052 -2.5833 0.0030 15 7 2.0136 -3.1173 1.9058 16 6 1.5969 -4.4492 1.8044 17 6 1.4710 -5.0459 0.5565 18 6 1.0600 -6.3607 0.4599 19 6 0.7745 -7.0834 1.6040 20 7 0.3348 -8.4927 1.4968 21 8 0.2252 -9.0149 0.4019 22 8 0.0834 -9.1305 2.5036 23 6 0.8999 -6.4926 2.8477 24 6 1.3156 -5.1794 2.9515 25 7 1.4555 -4.5495 4.2836 26 8 1.3039 -5.2163 5.2915 27 8 1.7223 -3.3643 4.3719 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 1.5612 1.9273 0.8308 32 1 3.0798 1.3443 0.1082 33 1 2.9876 4.9176 -0.7774 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6612 1.1755 36 1 2.5735 -2.8393 2.6475 37 1 1.6950 -4.4825 -0.3372 38 1 0.9616 -6.8252 -0.5101 39 1 0.6765 -7.0597 3.7393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005913383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:10 Heat of formation + Delta-G solvation = -2.434810 kcal Electronic energy + Delta-G solvation = -28605.399819 eV Core-core repulsion = 24134.436925 eV Total energy + Delta-G solvation = -4470.962894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.84828 -43.36103 -42.04946 -40.35216 -38.19404 -37.85429 -37.81270 -36.38933 -34.65783 -33.64418 -32.69541 -30.18498 -28.88775 -28.20049 -27.47004 -26.02944 -24.79798 -23.83139 -22.76090 -21.73231 -21.42295 -20.28943 -19.75143 -19.58827 -19.07230 -18.91165 -18.76623 -18.70747 -18.20054 -17.24226 -16.82198 -16.43655 -16.12776 -15.92504 -15.65077 -15.34289 -14.98354 -14.84745 -14.34557 -13.87470 -13.74404 -13.38781 -13.03106 -12.91305 -12.85491 -12.79494 -12.71755 -12.61004 -12.54434 -12.51221 -12.41834 -12.41539 -12.21890 -12.00419 -11.50808 -11.31685 -11.00546 -10.60938 -10.29026 -9.11654 -8.21181 -6.29751 -1.78317 -1.51089 -0.31479 -0.27698 -0.09452 0.15854 1.07836 1.24453 1.42816 1.44209 1.52401 1.66232 2.40484 2.60242 2.89908 2.91786 3.05854 3.12305 3.24670 3.38902 3.66813 3.94257 4.07677 4.21150 4.27326 4.35914 4.46542 4.56861 4.66194 4.77536 4.89708 5.04009 5.09684 5.16331 5.26678 5.61433 5.76077 6.01495 6.16657 6.19490 6.27756 6.48023 6.65963 6.84713 7.39411 8.89249 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002383 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.431304 B =11745.817446 C =12951.122825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.536 5.536 3 C 0.208 3.792 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.034 3.966 13 C 0.534 3.466 14 O -0.507 6.507 15 N -0.658 5.658 16 C 0.275 3.725 17 C -0.124 4.124 18 C 0.034 3.966 19 C -0.072 4.072 20 N 0.034 4.966 21 O -0.149 6.149 22 O -0.169 6.169 23 C 0.040 3.960 24 C -0.086 4.086 25 N 0.039 4.961 26 O -0.145 6.145 27 O -0.170 6.170 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.076 0.924 31 H -0.026 1.026 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.438 0.562 37 H 0.186 0.814 38 H 0.200 0.800 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.999 -21.949 7.083 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.261 5.261 3 C 0.082 3.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.195 1.195 12 C -0.097 4.097 13 C 0.323 3.677 14 O -0.380 6.380 15 N -0.309 5.309 16 C 0.172 3.828 17 C -0.145 4.145 18 C 0.015 3.985 19 C -0.157 4.157 20 N 0.554 4.446 21 O -0.367 6.367 22 O -0.382 6.382 23 C 0.020 3.980 24 C -0.174 4.174 25 N 0.556 4.444 26 O -0.364 6.364 27 O -0.378 6.378 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.094 0.906 31 H -0.009 1.009 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.283 0.717 37 H 0.203 0.797 38 H 0.217 0.783 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.035 -21.671 5.443 22.368 hybrid contribution -0.181 1.106 0.930 1.456 sum -1.216 -20.565 6.374 21.564 Atomic orbital electron populations 1.22306 0.87427 1.01500 0.99838 1.61752 1.08469 1.15743 1.40096 1.19454 0.94423 0.82556 0.95325 1.21401 1.35031 0.97482 1.02504 0.92252 1.25796 0.95052 0.97984 1.00373 1.70035 1.39111 1.11955 1.35924 0.85525 0.78712 0.77288 0.79632 1.19563 1.20843 1.19486 1.22067 1.03917 0.88488 0.95227 1.21186 0.77331 0.88386 0.80779 1.90675 1.37773 1.80199 1.29343 1.44310 1.51030 1.05179 1.30343 1.18022 0.88084 0.84509 0.92135 1.21565 1.01975 0.93836 0.97159 1.21618 0.85383 0.91895 0.99647 1.20722 1.15498 0.83672 0.95784 1.43442 0.97993 1.02615 1.00585 1.94581 1.55902 1.71680 1.14577 1.94600 1.53480 1.63012 1.27138 1.20541 0.86935 0.91016 0.99483 1.20502 1.19117 0.95693 0.82122 1.43313 0.97868 1.00755 1.02431 1.94599 1.53306 1.62930 1.25580 1.94472 1.51716 0.98579 1.93069 0.96794 0.92468 0.90588 1.00878 0.96337 0.92617 0.89935 0.85694 0.71676 0.79686 0.78303 0.78815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 9.03 127.69 1.15 2.55 16 2 N -0.54 -21.04 4.49 -931.63 -4.18 -25.23 16 3 C 0.21 10.13 4.72 85.56 0.40 10.54 16 4 C -0.53 -28.44 8.46 25.60 0.22 -28.23 16 5 H 0.06 3.21 7.12 -2.91 -0.02 3.19 16 6 C 0.01 0.36 5.46 84.66 0.46 0.82 16 7 N -0.93 -53.31 13.29 21.45 0.28 -53.03 16 8 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 C 0.03 0.95 5.45 85.56 0.47 1.42 16 13 C 0.53 12.78 7.40 87.66 0.65 13.43 16 14 O -0.51 -14.51 11.76 -3.05 -0.04 -14.55 16 15 N -0.66 -11.50 4.56 -303.49 -1.38 -12.88 16 16 C 0.28 4.39 6.28 38.15 0.24 4.63 16 17 C -0.12 -1.69 8.69 22.39 0.19 -1.50 16 18 C 0.03 0.37 9.55 22.25 0.21 0.58 16 19 C -0.07 -0.97 6.85 36.39 0.25 -0.72 16 20 N 0.03 0.61 4.45 -46.41 -0.21 0.40 16 21 O -0.15 -2.80 18.44 18.89 0.35 -2.45 16 22 O -0.17 -3.35 18.44 18.88 0.35 -3.00 16 23 C 0.04 0.54 9.06 22.25 0.20 0.74 16 24 C -0.09 -1.35 6.86 36.50 0.25 -1.10 16 25 N 0.04 0.74 4.45 -46.16 -0.21 0.54 16 26 O -0.15 -2.95 18.46 18.89 0.35 -2.60 16 27 O -0.17 -3.46 16.03 18.89 0.30 -3.16 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 2.36 6.76 -2.39 -0.02 2.34 16 30 H 0.08 2.60 5.88 -2.39 -0.01 2.58 16 31 H -0.03 -1.39 8.12 -2.39 -0.02 -1.41 16 32 H 0.02 0.94 7.93 -2.38 -0.02 0.93 16 33 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.08 2.11 8.12 -2.38 -0.02 2.09 16 35 H 0.13 3.08 7.93 -2.39 -0.02 3.06 16 36 H 0.44 6.38 6.51 -92.71 -0.60 5.78 16 37 H 0.19 2.82 6.25 -2.91 -0.02 2.80 16 38 H 0.20 1.21 7.60 -2.91 -0.02 1.18 16 39 H 0.19 2.19 7.17 -2.91 -0.02 2.17 16 Total: -1.00 -65.53 348.90 2.88 -62.65 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.54 Total: 5.25 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 4.70 Total: 3.17 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -5.69 Total: -90.20 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: 1.31 Total: -25.76 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -65.53 2.88 -62.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005913383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.213 kcal (2) G-P(sol) polarization free energy of solvation -65.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds