Wall clock time and date at job start Tue Mar 31 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38436 * 120.44946 * 2 1 4 4 C 1.38770 * 118.49079 * 180.24674 * 3 2 1 5 5 C 1.38152 * 119.29813 * 359.75107 * 4 3 2 6 6 N 1.31881 * 120.84608 * 359.97438 * 5 4 3 7 7 C 1.32361 * 121.64007 * 0.02562 * 6 5 4 8 8 N 1.39634 * 119.68826 * 179.97438 * 7 6 5 9 9 C 1.36932 * 119.80384 * 273.28032 * 8 7 6 10 10 S 1.76198 * 118.48297 * 359.97438 * 9 8 7 11 11 C 1.76203 * 99.99685 * 180.27152 * 10 9 8 12 12 H 1.07995 * 120.00518 * 359.97438 * 11 10 9 13 13 C 1.38812 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00172 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00193 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47240 * 89.99811 * 15 13 11 17 17 H 1.48504 * 109.47145 * 209.99846 * 15 13 11 18 18 H 1.48493 * 109.47121 * 329.99839 * 15 13 11 19 19 N 1.30936 * 123.03006 * 180.27565 * 9 8 7 20 20 C 1.34776 * 121.65851 * 359.74467 * 19 9 8 21 21 C 1.39837 * 121.51964 * 180.02562 * 20 19 9 22 22 C 1.36610 * 119.80505 * 179.97438 * 21 20 19 23 23 C 1.38919 * 120.98064 * 0.02562 * 22 21 20 24 24 C 1.37776 * 120.58816 * 359.95795 * 23 22 21 25 25 C 1.39404 * 119.41870 * 0.04042 * 24 23 22 26 26 C 1.35348 * 119.79917 * 93.03164 * 8 7 6 27 27 O 1.21718 * 121.25206 * 0.02562 * 26 8 7 28 28 H 1.09001 * 109.47274 * 274.18963 * 1 2 3 29 29 H 1.09000 * 109.47002 * 34.18855 * 1 2 3 30 30 H 1.08996 * 109.47421 * 154.19093 * 1 2 3 31 31 H 1.07996 * 120.75286 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.35412 * 179.72449 * 4 3 2 33 33 H 1.08001 * 119.57825 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00266 * 179.97438 * 14 13 11 35 35 H 1.07994 * 120.09492 * 359.95859 * 21 20 19 36 36 H 1.08006 * 119.50816 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.70199 * 179.97438 * 23 22 21 38 38 H 1.08007 * 120.29436 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1934 0.0000 4 6 3.5954 1.1460 -0.0053 5 6 4.2299 -0.0812 -0.0051 6 7 3.5347 -1.2019 0.0006 7 6 2.2111 -1.1979 0.0057 8 7 1.5159 -2.4088 0.0110 9 6 1.2313 -3.0354 -1.1728 10 16 1.7605 -2.2778 -2.6730 11 6 1.1523 -3.4505 -3.8390 12 1 0.6241 -4.3282 -3.4970 13 6 1.3520 -3.2461 -5.1974 14 7 0.8985 -4.1216 -6.0679 15 14 2.2662 -1.7284 -5.7892 16 1 3.7185 -2.0267 -5.8735 17 1 1.7623 -1.3386 -7.1307 18 1 2.0445 -0.6132 -4.8341 19 7 0.5792 -4.1688 -1.2417 20 6 0.1442 -4.8030 -0.1350 21 6 -0.5515 -6.0136 -0.2119 22 6 -0.9761 -6.6267 0.9327 23 6 -0.7279 -6.0653 2.1789 24 6 -0.0447 -4.8738 2.2877 25 6 0.3979 -4.2304 1.1329 26 6 1.1316 -2.9587 1.1865 27 8 1.3798 -2.4172 2.2480 28 1 -0.3634 0.0751 1.0249 29 1 -0.3633 0.8501 -0.5775 30 1 -0.3634 -0.9251 -0.4474 31 1 1.6883 2.1398 0.0004 32 1 4.1727 2.0587 -0.0099 33 1 5.3091 -0.1234 -0.0095 34 1 1.0378 -3.9787 -7.0171 35 1 -0.7528 -6.4623 -1.1734 36 1 -1.5126 -7.5618 0.8677 37 1 -1.0733 -6.5676 3.0705 38 1 0.1453 -4.4414 3.2590 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005922117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:13 Heat of formation + Delta-G solvation = 62.682264 kcal Electronic energy + Delta-G solvation = -26492.892524 eV Core-core repulsion = 22812.929541 eV Total energy + Delta-G solvation = -3679.962983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.078 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58548 -39.89698 -38.01297 -36.94836 -34.21550 -33.60498 -32.83310 -31.29168 -30.56139 -29.54791 -27.33357 -26.02102 -24.84303 -24.54166 -22.83698 -22.10372 -21.54252 -19.20667 -18.88912 -18.17583 -17.16331 -17.03857 -15.94156 -15.49184 -15.32585 -15.10149 -15.03969 -14.62626 -14.22960 -14.18532 -13.95863 -13.54737 -13.17641 -13.14102 -13.00013 -12.72480 -12.55584 -12.20364 -12.04016 -11.76435 -11.66434 -11.43881 -11.36199 -11.34701 -10.36293 -10.12700 -9.94803 -9.85403 -9.49719 -9.44397 -9.37015 -9.11987 -8.86401 -8.77963 -8.30205 -7.14378 -6.62123 -4.41725 0.85515 0.92219 1.18836 1.22603 1.94260 2.60479 2.65227 2.99938 3.05691 3.07564 3.12026 3.63705 3.91264 4.17374 4.34002 4.48477 4.65148 4.72508 4.78742 4.87296 4.90739 4.95159 5.02800 5.15152 5.25587 5.38084 5.52504 5.58608 5.60214 5.71077 5.83744 5.98623 6.04524 6.12000 6.21598 6.34725 6.38726 6.62334 6.70628 6.74130 6.90165 7.13472 7.63141 7.86119 8.04551 8.41038 8.56029 8.75179 10.45183 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.006491 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.019853 B = 4312.799574 C = 6932.201398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.072 4.072 4 C -0.159 4.159 5 C 0.107 3.893 6 N -0.464 5.464 7 C 0.330 3.670 8 N -0.487 5.487 9 C 0.360 3.640 10 S 0.094 5.906 11 C -0.526 4.526 12 H 0.135 0.865 13 C 0.104 3.896 14 N -0.846 5.846 15 Si 0.838 3.162 16 H -0.259 1.259 17 H -0.261 1.261 18 H -0.240 1.240 19 N -0.520 5.520 20 C 0.199 3.801 21 C -0.127 4.127 22 C -0.068 4.068 23 C -0.172 4.172 24 C -0.031 4.031 25 C -0.228 4.228 26 C 0.566 3.434 27 O -0.521 6.521 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.278 0.722 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 7.273 10.775 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 C -0.098 4.098 4 C -0.179 4.179 5 C -0.052 4.052 6 N -0.173 5.173 7 C 0.104 3.896 8 N -0.212 5.212 9 C -0.006 4.006 10 S 0.337 5.663 11 C -0.674 4.674 12 H 0.153 0.847 13 C -0.109 4.109 14 N -0.480 5.480 15 Si 0.662 3.338 16 H -0.184 1.184 17 H -0.185 1.185 18 H -0.164 1.164 19 N -0.247 5.247 20 C 0.079 3.921 21 C -0.148 4.148 22 C -0.087 4.087 23 C -0.192 4.192 24 C -0.050 4.050 25 C -0.237 4.237 26 C 0.360 3.640 27 O -0.396 6.396 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.121 7.377 10.163 12.608 hybrid contribution -0.400 0.416 0.384 0.693 sum 0.721 7.793 10.547 13.133 Atomic orbital electron populations 1.20774 0.89710 1.03930 1.02788 1.20750 0.98012 0.92433 0.99105 1.21386 0.94091 0.97539 0.96780 1.22208 0.95169 0.99732 1.00794 1.22573 1.00133 0.86621 0.95864 1.67141 1.07073 1.32713 1.10397 1.17840 0.87879 0.84496 0.99420 1.43881 1.49843 1.20287 1.07148 1.25511 0.93080 0.91493 0.90484 1.83244 1.62892 1.28712 0.91404 1.22928 1.42595 1.10792 0.91114 0.84712 1.24746 0.94272 0.96412 0.95446 1.69839 1.41434 1.34024 1.02653 0.87090 0.81711 0.83761 0.81278 1.18386 1.18531 1.16444 1.69092 1.20851 1.07679 1.27106 1.18916 0.92185 0.93700 0.87251 1.20603 1.00356 0.94360 0.99469 1.20911 0.96841 0.98878 0.92119 1.20928 1.03645 0.96989 0.97635 1.20860 0.93535 0.93718 0.96932 1.20388 1.09823 0.97624 0.95882 1.18414 0.78567 0.84911 0.82117 1.90790 1.56748 1.63889 1.28211 0.90509 0.90243 0.91189 0.83983 0.84102 0.81986 0.91124 0.84557 0.85648 0.85851 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.83 36.00 0.35 -1.28 16 2 C -0.10 -1.56 5.91 -104.29 -0.62 -2.17 16 3 C -0.07 -0.87 9.87 -39.31 -0.39 -1.25 16 4 C -0.16 -1.77 10.11 -39.42 -0.40 -2.17 16 5 C 0.11 1.45 11.18 -17.56 -0.20 1.26 16 6 N -0.46 -8.49 10.39 -12.32 -0.13 -8.62 16 7 C 0.33 6.24 4.10 -154.50 -0.63 5.61 16 8 N -0.49 -10.13 1.78 -63.01 -0.11 -10.24 16 9 C 0.36 8.07 7.31 -88.26 -0.65 7.43 16 10 S 0.09 2.16 18.29 -107.50 -1.97 0.20 16 11 C -0.53 -14.04 9.77 30.94 0.30 -13.74 16 12 H 0.14 3.93 6.71 -52.49 -0.35 3.58 16 13 C 0.10 2.73 5.50 -17.47 -0.10 2.64 16 14 N -0.85 -23.31 13.96 55.49 0.77 -22.54 16 15 Si 0.84 18.57 27.74 -169.99 -4.71 13.86 16 16 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.24 -5.06 6.74 56.52 0.38 -4.68 16 19 N -0.52 -11.97 8.28 -10.83 -0.09 -12.06 16 20 C 0.20 4.04 6.62 -84.77 -0.56 3.48 16 21 C -0.13 -2.18 9.98 -39.57 -0.40 -2.57 16 22 C -0.07 -0.94 9.95 -39.92 -0.40 -1.33 16 23 C -0.17 -2.33 10.02 -39.50 -0.40 -2.72 16 24 C -0.03 -0.50 9.68 -39.32 -0.38 -0.88 16 25 C -0.23 -4.44 5.90 -104.74 -0.62 -5.06 16 26 C 0.57 11.83 7.62 -12.49 -0.10 11.74 16 27 O -0.52 -11.33 16.68 5.17 0.09 -11.24 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.07 1.17 6.98 -51.93 -0.36 0.80 16 31 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.14 2.29 8.06 -52.49 -0.42 1.86 16 36 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.91 7.82 -52.48 -0.41 1.50 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -32.06 345.83 -9.76 -41.82 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.66 Total: 4.66 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -5.16 Total: -1.04 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.45 Total: -53.46 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.71 Total: 13.86 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.97 Total: 0.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.06 -9.76 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005922117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.498 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds