Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38436 * 120.44946 * 2 1 4 4 C 1.38770 * 118.49079 * 180.24674 * 3 2 1 5 5 C 1.38152 * 119.29813 * 359.75107 * 4 3 2 6 6 N 1.31881 * 120.84608 * 359.97438 * 5 4 3 7 7 C 1.32361 * 121.64007 * 0.02562 * 6 5 4 8 8 N 1.39634 * 119.68826 * 179.97438 * 7 6 5 9 9 C 1.36932 * 119.80384 * 273.28032 * 8 7 6 10 10 S 1.76198 * 118.48297 * 359.97438 * 9 8 7 11 11 C 1.76203 * 99.99685 * 180.27152 * 10 9 8 12 12 H 1.07995 * 120.00518 * 359.97438 * 11 10 9 13 13 C 1.38812 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00172 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00193 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47240 * 89.99811 * 15 13 11 17 17 H 1.48504 * 109.47145 * 209.99846 * 15 13 11 18 18 H 1.48493 * 109.47121 * 329.99839 * 15 13 11 19 19 N 1.30936 * 123.03006 * 180.27565 * 9 8 7 20 20 C 1.34776 * 121.65851 * 359.74467 * 19 9 8 21 21 C 1.39837 * 121.51964 * 180.02562 * 20 19 9 22 22 C 1.36610 * 119.80505 * 179.97438 * 21 20 19 23 23 C 1.38919 * 120.98064 * 0.02562 * 22 21 20 24 24 C 1.37776 * 120.58816 * 359.95795 * 23 22 21 25 25 C 1.39404 * 119.41870 * 0.04042 * 24 23 22 26 26 C 1.35348 * 119.79917 * 93.03164 * 8 7 6 27 27 O 1.21718 * 121.25206 * 0.02562 * 26 8 7 28 28 H 1.09001 * 109.47274 * 274.18963 * 1 2 3 29 29 H 1.09000 * 109.47002 * 34.18855 * 1 2 3 30 30 H 1.08996 * 109.47421 * 154.19093 * 1 2 3 31 31 H 1.07996 * 120.75286 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.35412 * 179.72449 * 4 3 2 33 33 H 1.08001 * 119.57825 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00266 * 179.97438 * 14 13 11 35 35 H 1.07994 * 120.09492 * 359.95859 * 21 20 19 36 36 H 1.08006 * 119.50816 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.70199 * 179.97438 * 23 22 21 38 38 H 1.08007 * 120.29436 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1934 0.0000 4 6 3.5954 1.1460 -0.0053 5 6 4.2299 -0.0812 -0.0051 6 7 3.5347 -1.2019 0.0006 7 6 2.2111 -1.1979 0.0057 8 7 1.5159 -2.4088 0.0110 9 6 1.2313 -3.0354 -1.1728 10 16 1.7605 -2.2778 -2.6730 11 6 1.1523 -3.4505 -3.8390 12 1 0.6241 -4.3282 -3.4970 13 6 1.3520 -3.2461 -5.1974 14 7 0.8985 -4.1216 -6.0679 15 14 2.2662 -1.7284 -5.7892 16 1 3.7185 -2.0267 -5.8735 17 1 1.7623 -1.3386 -7.1307 18 1 2.0445 -0.6132 -4.8341 19 7 0.5792 -4.1688 -1.2417 20 6 0.1442 -4.8030 -0.1350 21 6 -0.5515 -6.0136 -0.2119 22 6 -0.9761 -6.6267 0.9327 23 6 -0.7279 -6.0653 2.1789 24 6 -0.0447 -4.8738 2.2877 25 6 0.3979 -4.2304 1.1329 26 6 1.1316 -2.9587 1.1865 27 8 1.3798 -2.4172 2.2480 28 1 -0.3634 0.0751 1.0249 29 1 -0.3633 0.8501 -0.5775 30 1 -0.3634 -0.9251 -0.4474 31 1 1.6883 2.1398 0.0004 32 1 4.1727 2.0587 -0.0099 33 1 5.3091 -0.1234 -0.0095 34 1 1.0378 -3.9787 -7.0171 35 1 -0.7528 -6.4623 -1.1734 36 1 -1.5126 -7.5618 0.8677 37 1 -1.0733 -6.5676 3.0705 38 1 0.1453 -4.4414 3.2590 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005922117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = 43.709204 kcal Electronic energy + Delta-G solvation = -26493.715257 eV Core-core repulsion = 22812.929541 eV Total energy + Delta-G solvation = -3680.785716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.078 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.01231 -41.11089 -39.42446 -38.47640 -35.61616 -34.81358 -34.70257 -32.59908 -31.76327 -31.01570 -28.44500 -28.01459 -26.17001 -26.03860 -24.03348 -23.20351 -22.98126 -20.83495 -20.20732 -19.68813 -18.90154 -18.26969 -17.27946 -17.12603 -16.76125 -16.52939 -16.37269 -16.04188 -15.49420 -15.30598 -15.22370 -14.98342 -14.90807 -14.60863 -14.10813 -13.87028 -13.83605 -13.61267 -13.58427 -13.28166 -13.10610 -12.95559 -12.82001 -12.64476 -12.07280 -11.56859 -11.47853 -11.34682 -11.23126 -10.92970 -10.76626 -10.53737 -10.23263 -9.95814 -9.93295 -8.78105 -8.58914 -6.43010 -0.61749 -0.22702 -0.17765 0.21352 0.26227 1.06689 1.16510 1.26389 1.31604 1.40811 1.66394 2.09623 2.30467 2.56776 2.78533 2.93890 3.15500 3.36616 3.48522 3.69199 3.76099 3.89713 3.98111 4.03359 4.08384 4.28017 4.36272 4.43070 4.51512 4.60569 4.64591 4.91270 4.95896 5.01159 5.07044 5.08525 5.15687 5.22014 5.42208 5.45830 5.65447 5.68496 5.85381 6.38585 6.45415 6.76208 6.80297 6.83413 8.53095 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.006491 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.019853 B = 4312.799574 C = 6932.201398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C -0.066 4.066 4 C -0.136 4.136 5 C 0.093 3.907 6 N -0.508 5.508 7 C 0.279 3.721 8 N -0.481 5.481 9 C 0.356 3.644 10 S 0.102 5.898 11 C -0.551 4.551 12 H 0.092 0.908 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.255 1.255 17 H -0.246 1.246 18 H -0.223 1.223 19 N -0.547 5.547 20 C 0.155 3.845 21 C -0.139 4.139 22 C -0.049 4.049 23 C -0.139 4.139 24 C -0.042 4.042 25 C -0.241 4.241 26 C 0.555 3.445 27 O -0.540 6.540 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.034 0.966 31 H 0.186 0.814 32 H 0.193 0.807 33 H 0.193 0.807 34 H 0.283 0.717 35 H 0.131 0.869 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 9.162 12.971 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.155 4.155 5 C -0.065 4.065 6 N -0.219 5.219 7 C 0.056 3.944 8 N -0.205 5.205 9 C -0.013 4.013 10 S 0.343 5.657 11 C -0.699 4.699 12 H 0.110 0.890 13 C -0.153 4.153 14 N -0.530 5.530 15 Si 0.718 3.282 16 H -0.179 1.179 17 H -0.170 1.170 18 H -0.147 1.147 19 N -0.274 5.274 20 C 0.038 3.962 21 C -0.160 4.160 22 C -0.068 4.068 23 C -0.158 4.158 24 C -0.062 4.062 25 C -0.250 4.250 26 C 0.350 3.650 27 O -0.417 6.417 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.053 0.947 31 H 0.203 0.797 32 H 0.210 0.790 33 H 0.209 0.791 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.191 0.809 37 H 0.192 0.808 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.301 9.221 12.418 15.522 hybrid contribution -0.545 -0.333 0.069 0.643 sum 0.755 8.888 12.488 15.346 Atomic orbital electron populations 1.20764 0.89441 1.03369 1.03189 1.21041 0.98563 0.92800 0.99534 1.21951 0.94777 0.97662 0.94840 1.22768 0.95083 1.00543 0.97084 1.23288 1.01537 0.86617 0.95093 1.67032 1.07238 1.35445 1.12150 1.18153 0.88616 0.84383 1.03262 1.43834 1.49426 1.20984 1.06226 1.25409 0.93212 0.91661 0.90998 1.82674 1.64610 1.27965 0.90424 1.22857 1.43228 1.11060 0.92758 0.88970 1.25608 0.94872 0.99569 0.95215 1.69944 1.43510 1.36380 1.03204 0.86176 0.80311 0.80216 0.81515 1.17900 1.16963 1.14691 1.69022 1.20729 1.08260 1.29378 1.19276 0.94509 0.95326 0.87047 1.20835 1.00483 0.93648 1.01000 1.21436 0.94940 0.99721 0.90740 1.21535 0.99981 0.95047 0.99281 1.21189 0.93938 0.94768 0.96275 1.20629 1.10042 0.97507 0.96776 1.18750 0.78697 0.85428 0.82118 1.90741 1.57902 1.64618 1.28471 0.90124 0.87157 0.94728 0.79691 0.78988 0.79061 0.90667 0.85115 0.80931 0.80825 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 9.83 71.24 0.70 -2.46 16 2 C -0.12 -3.56 5.91 -19.65 -0.12 -3.68 16 3 C -0.07 -1.38 9.87 22.44 0.22 -1.16 16 4 C -0.14 -2.46 10.11 22.38 0.23 -2.24 16 5 C 0.09 2.36 11.18 84.66 0.95 3.30 16 6 N -0.51 -18.80 10.39 -192.89 -2.00 -20.80 16 7 C 0.28 10.83 4.10 132.81 0.54 11.37 16 8 N -0.48 -21.14 1.78 -471.14 -0.84 -21.98 16 9 C 0.36 17.10 7.31 179.52 1.31 18.41 16 10 S 0.10 4.94 18.29 -56.49 -1.03 3.91 16 11 C -0.55 -31.48 9.77 67.96 0.66 -30.82 16 12 H 0.09 5.91 6.71 -2.91 -0.02 5.89 16 13 C 0.06 3.07 5.50 84.88 0.47 3.54 16 14 N -0.90 -52.02 13.96 21.64 0.30 -51.72 16 15 Si 0.90 39.03 27.74 68.60 1.90 40.94 16 16 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 18 H -0.22 -9.00 6.74 99.48 0.67 -8.33 16 19 N -0.55 -27.22 8.28 -188.17 -1.56 -28.78 16 20 C 0.15 6.62 6.62 39.86 0.26 6.88 16 21 C -0.14 -4.82 9.98 22.28 0.22 -4.60 16 22 C -0.05 -1.21 9.95 22.05 0.22 -0.99 16 23 C -0.14 -3.21 10.02 22.32 0.22 -2.99 16 24 C -0.04 -1.30 9.68 22.44 0.22 -1.09 16 25 C -0.24 -9.67 5.90 -19.94 -0.12 -9.78 16 26 C 0.56 24.30 7.62 86.43 0.66 24.96 16 27 O -0.54 -24.25 16.68 -4.41 -0.07 -24.32 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.11 2.34 8.12 -2.39 -0.02 2.32 16 30 H 0.03 1.21 6.98 -2.39 -0.02 1.20 16 31 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 36 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.14 3.97 7.82 -2.91 -0.02 3.95 16 Total: -1.00 -79.91 345.83 4.43 -75.48 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.08 Total: 18.60 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 6.65 Total: 8.67 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -4.10 Total: -123.28 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.07 Total: -24.32 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.90 Total: 40.94 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.03 Total: 3.91 kcal Total: -79.91 4.43 -75.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005922117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.193 kcal (2) G-P(sol) polarization free energy of solvation -79.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds