Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00135 * 2 1 4 4 C 1.50699 * 109.47146 * 270.00173 * 3 2 1 5 5 H 1.07998 * 119.99808 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99825 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00069 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99663 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47355 * 89.99830 * 8 6 4 10 10 H 1.48503 * 109.46978 * 209.99357 * 8 6 4 11 11 H 1.48498 * 109.47206 * 329.99366 * 8 6 4 12 12 C 1.34777 * 120.00014 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00141 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99960 * 0.02562 * 12 2 1 15 15 S 1.80991 * 109.47151 * 179.97438 * 14 12 2 16 16 C 1.76208 * 99.99974 * 179.97438 * 15 14 12 17 17 N 1.31214 * 126.25905 * 0.02562 * 16 15 14 18 18 N 1.28644 * 109.49062 * 179.97438 * 17 16 15 19 19 C 1.31324 * 109.39205 * 0.02562 * 18 17 16 20 20 C 1.47037 * 126.32901 * 179.97438 * 19 18 17 21 21 C 1.36160 * 125.33551 * 359.97123 * 20 19 18 22 22 C 1.37830 * 114.42290 * 179.97438 * 21 20 19 23 23 C 1.33631 * 115.19081 * 0.02562 * 22 21 20 24 24 S 1.75824 * 109.97905 * 359.75612 * 23 22 21 25 25 O 1.34756 * 126.25826 * 179.97438 * 16 15 14 26 26 H 1.09003 * 109.47465 * 270.00089 * 1 2 3 27 27 H 1.09007 * 109.46817 * 29.99804 * 1 2 3 28 28 H 1.08997 * 109.47190 * 150.00058 * 1 2 3 29 29 H 1.09001 * 109.47324 * 29.99956 * 3 2 1 30 30 H 1.08998 * 109.46952 * 149.99910 * 3 2 1 31 31 H 0.97001 * 120.00380 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47297 * 59.99401 * 14 12 2 33 33 H 1.09007 * 109.47138 * 299.99886 * 14 12 2 34 34 H 1.07997 * 122.78986 * 359.97438 * 21 20 19 35 35 H 1.08000 * 122.40591 * 179.97438 * 22 21 20 36 36 H 1.08003 * 125.01010 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8775 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4389 3.4163 -3.4339 9 1 2.3093 4.2595 -3.9010 10 1 4.6994 4.1989 -3.4962 11 1 3.5559 2.2190 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 16 2.5615 -3.8480 0.0005 16 6 1.4413 -5.2082 0.0013 17 7 0.1313 -5.1347 0.0012 18 7 -0.3653 -6.3214 0.0014 19 6 0.6092 -7.2018 0.0021 20 6 0.4615 -8.6647 0.0030 21 6 -0.7228 -9.3366 0.0038 22 6 -0.5992 -10.7094 0.0040 23 6 0.6562 -11.1674 0.0039 24 16 1.7869 -9.8210 -0.0035 25 8 1.7735 -6.5142 0.0011 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1383 0.5138 31 1 4.0311 4.4434 -0.8503 32 1 0.7589 -2.5303 -0.8897 33 1 0.7583 -2.5299 0.8903 34 1 -1.6795 -8.8356 0.0043 35 1 -1.4554 -11.3676 0.0050 36 1 0.9351 -12.2108 0.0036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006169297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = 55.275195 kcal Electronic energy + Delta-G solvation = -22705.282761 eV Core-core repulsion = 19024.609440 eV Total energy + Delta-G solvation = -3680.673320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.050 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.21778 -39.13905 -38.27535 -36.41477 -35.04927 -32.79420 -32.65841 -30.39770 -29.22397 -27.51949 -25.83570 -25.52725 -24.29102 -23.20874 -22.78404 -19.96559 -19.28367 -18.78770 -17.99807 -17.67340 -16.71301 -16.55056 -16.24216 -16.19249 -15.46795 -15.23669 -14.58506 -14.34384 -13.95728 -13.74038 -13.34610 -13.27440 -12.89455 -12.79376 -12.72568 -12.31387 -12.20348 -12.11964 -11.96789 -11.71676 -11.36016 -11.27237 -11.09289 -10.95357 -10.75296 -10.59858 -10.22990 -9.72286 -9.31682 -9.28454 -9.08737 -8.49518 -7.93891 -7.81331 -6.10680 -4.15983 -0.20965 0.33480 0.85138 1.04518 1.33413 1.71420 1.93059 2.32186 2.40561 3.06828 3.27414 3.34439 3.38856 3.71303 3.95421 4.39309 4.48843 4.56590 4.66323 4.80601 4.89372 4.96436 4.99847 5.12332 5.23786 5.25985 5.45606 5.58231 5.65008 5.80396 5.83689 6.13635 6.86648 7.29848 7.36844 7.84237 7.87640 8.13174 8.15506 8.67117 8.89538 9.49266 10.97491 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.001964 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.475541 B =14253.491074 C =14485.969273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.589 5.589 3 C 0.245 3.755 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.524 3.476 13 O -0.528 6.528 14 C -0.159 4.159 15 S 0.156 5.844 16 C 0.131 3.869 17 N -0.291 5.291 18 N -0.252 5.252 19 C 0.226 3.774 20 C -0.140 4.140 21 C -0.068 4.068 22 C -0.139 4.139 23 C -0.198 4.198 24 S 0.174 5.826 25 O -0.202 6.202 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 -28.122 3.027 29.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.321 5.321 3 C 0.126 3.874 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.406 6.406 14 C -0.310 4.310 15 S 0.386 5.614 16 C -0.184 4.184 17 N -0.143 5.143 18 N -0.101 5.101 19 C 0.013 3.987 20 C -0.259 4.259 21 C -0.103 4.103 22 C -0.169 4.169 23 C -0.336 4.336 24 S 0.439 5.561 25 O -0.084 6.084 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.175 0.825 35 H 0.170 0.830 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.339 -27.196 3.066 28.092 hybrid contribution -1.742 -0.253 -0.988 2.019 sum -8.081 -27.448 2.077 28.689 Atomic orbital electron populations 1.21773 0.80764 1.03138 1.01019 1.48087 1.06592 1.07196 1.70194 1.19411 0.92664 0.77420 0.97872 1.21399 1.36911 1.06502 0.92096 0.92316 1.24936 0.95208 0.96331 0.97578 1.69923 1.38144 1.14303 1.30799 0.86470 0.77727 0.78636 0.84454 1.20591 1.21028 1.19834 1.19181 0.87607 0.83798 0.78703 1.90737 1.13070 1.86359 1.50416 1.24106 1.02476 0.95091 1.09359 1.86954 0.99041 0.86070 1.89360 1.30721 0.97611 0.87676 1.02432 1.74917 1.04116 1.15295 1.20001 1.74550 1.25378 0.94342 1.15846 1.23993 0.78835 0.93408 1.02473 1.21259 0.98707 0.88506 1.17439 1.20700 0.97873 0.93398 0.98345 1.20071 0.97868 0.94613 1.04310 1.26039 0.96422 1.03199 1.07921 1.84563 1.07047 0.94409 1.70097 1.85053 1.34975 1.17174 1.71171 0.93125 0.90181 0.92112 0.94476 0.93498 0.92600 0.85569 0.85700 0.82548 0.82971 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.24 59.85 0.61 1.76 16 2 N -0.59 -11.90 2.86 -182.95 -0.52 -12.42 16 3 C 0.25 6.18 5.16 -5.20 -0.03 6.16 16 4 C -0.53 -14.65 9.39 -34.44 -0.32 -14.98 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.52 10.29 7.69 -10.98 -0.08 10.21 16 13 O -0.53 -12.51 15.44 5.56 0.09 -12.42 16 14 C -0.16 -2.31 4.26 36.01 0.15 -2.16 16 15 S 0.16 2.28 21.45 -107.50 -2.31 -0.02 16 16 C 0.13 1.90 8.53 52.50 0.45 2.35 16 17 N -0.29 -4.41 11.61 30.33 0.35 -4.06 16 18 N -0.25 -3.69 12.21 31.97 0.39 -3.30 16 19 C 0.23 2.96 8.23 -14.20 -0.12 2.85 16 20 C -0.14 -1.40 6.46 -36.76 -0.24 -1.64 16 21 C -0.07 -0.53 10.13 -40.48 -0.41 -0.94 16 22 C -0.14 -0.76 10.15 -41.34 -0.42 -1.18 16 23 C -0.20 -1.02 11.21 29.12 0.33 -0.69 16 24 S 0.17 1.32 23.31 -107.50 -2.51 -1.19 16 25 O -0.20 -2.83 10.93 1.87 0.02 -2.81 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.23 8.07 -51.92 -0.42 0.81 16 28 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 29 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.13 1.67 7.40 -51.91 -0.38 1.28 16 33 H 0.12 1.56 8.11 -51.91 -0.42 1.14 16 34 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 36 H 0.17 0.40 8.06 -52.48 -0.42 -0.02 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -33.52 352.79 -7.23 -40.75 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -3.60 Total: -4.46 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.18 Total: 3.37 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.96 Total: -45.07 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.11 Total: -15.24 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -4.81 Total: -1.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.52 -7.23 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006169297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.026 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds