Wall clock time and date at job start Tue Mar 31 2020 06:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00135 * 2 1 4 4 C 1.50699 * 109.47146 * 270.00173 * 3 2 1 5 5 H 1.07998 * 119.99808 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99825 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00069 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99663 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47355 * 89.99830 * 8 6 4 10 10 H 1.48503 * 109.46978 * 209.99357 * 8 6 4 11 11 H 1.48498 * 109.47206 * 329.99366 * 8 6 4 12 12 C 1.34777 * 120.00014 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00141 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99960 * 0.02562 * 12 2 1 15 15 S 1.80991 * 109.47151 * 179.97438 * 14 12 2 16 16 C 1.76208 * 99.99974 * 179.97438 * 15 14 12 17 17 N 1.31214 * 126.25905 * 0.02562 * 16 15 14 18 18 N 1.28644 * 109.49062 * 179.97438 * 17 16 15 19 19 C 1.31324 * 109.39205 * 0.02562 * 18 17 16 20 20 C 1.47037 * 126.32901 * 179.97438 * 19 18 17 21 21 C 1.36160 * 125.33551 * 359.97123 * 20 19 18 22 22 C 1.37830 * 114.42290 * 179.97438 * 21 20 19 23 23 C 1.33631 * 115.19081 * 0.02562 * 22 21 20 24 24 S 1.75824 * 109.97905 * 359.75612 * 23 22 21 25 25 O 1.34756 * 126.25826 * 179.97438 * 16 15 14 26 26 H 1.09003 * 109.47465 * 270.00089 * 1 2 3 27 27 H 1.09007 * 109.46817 * 29.99804 * 1 2 3 28 28 H 1.08997 * 109.47190 * 150.00058 * 1 2 3 29 29 H 1.09001 * 109.47324 * 29.99956 * 3 2 1 30 30 H 1.08998 * 109.46952 * 149.99910 * 3 2 1 31 31 H 0.97001 * 120.00380 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47297 * 59.99401 * 14 12 2 33 33 H 1.09007 * 109.47138 * 299.99886 * 14 12 2 34 34 H 1.07997 * 122.78986 * 359.97438 * 21 20 19 35 35 H 1.08000 * 122.40591 * 179.97438 * 22 21 20 36 36 H 1.08003 * 125.01010 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8775 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4389 3.4163 -3.4339 9 1 2.3093 4.2595 -3.9010 10 1 4.6994 4.1989 -3.4962 11 1 3.5559 2.2190 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 16 2.5615 -3.8480 0.0005 16 6 1.4413 -5.2082 0.0013 17 7 0.1313 -5.1347 0.0012 18 7 -0.3653 -6.3214 0.0014 19 6 0.6092 -7.2018 0.0021 20 6 0.4615 -8.6647 0.0030 21 6 -0.7228 -9.3366 0.0038 22 6 -0.5992 -10.7094 0.0040 23 6 0.6562 -11.1674 0.0039 24 16 1.7869 -9.8210 -0.0035 25 8 1.7735 -6.5142 0.0011 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1383 0.5138 31 1 4.0311 4.4434 -0.8503 32 1 0.7589 -2.5303 -0.8897 33 1 0.7583 -2.5299 0.8903 34 1 -1.6795 -8.8356 0.0043 35 1 -1.4554 -11.3676 0.0050 36 1 0.9351 -12.2108 0.0036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006169297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:57 Heat of formation + Delta-G solvation = 30.054509 kcal Electronic energy + Delta-G solvation = -22706.376412 eV Core-core repulsion = 19024.609440 eV Total energy + Delta-G solvation = -3681.766971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.050 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.25910 -40.74996 -38.82005 -37.47095 -36.74663 -34.79643 -33.57006 -31.83034 -30.08210 -29.21246 -27.33823 -26.28072 -25.34774 -24.82039 -23.89799 -20.85908 -20.42133 -19.64558 -19.09237 -18.75606 -18.69824 -18.08649 -17.24957 -17.12227 -16.79272 -16.76397 -16.17769 -15.32791 -15.06827 -14.81374 -14.45051 -14.31441 -13.96144 -13.80853 -13.74650 -13.65179 -13.49364 -13.44831 -13.28504 -13.14702 -12.84430 -12.70199 -12.53215 -12.22681 -12.01888 -11.92107 -11.80889 -11.72396 -10.96351 -10.64343 -10.00359 -9.64009 -9.54872 -8.95925 -8.23636 -6.37809 -0.94697 -0.78612 0.16693 0.26186 0.56818 0.82741 1.06567 1.37056 1.37549 1.40088 1.49385 1.55734 1.74877 2.18423 2.40228 3.04276 3.06809 3.35414 3.62996 3.72960 3.83155 4.01977 4.11104 4.14210 4.36863 4.40924 4.55976 4.69511 4.93637 4.97450 4.98943 5.14720 5.20541 5.33166 5.49743 5.75904 6.02807 6.52795 6.70893 6.82786 7.12773 7.34043 8.83643 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.001964 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.475541 B =14253.491074 C =14485.969273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.578 6.578 14 C -0.142 4.142 15 S 0.145 5.855 16 C 0.126 3.874 17 N -0.298 5.298 18 N -0.282 5.282 19 C 0.241 3.759 20 C -0.190 4.190 21 C -0.050 4.050 22 C -0.146 4.146 23 C -0.167 4.167 24 S 0.157 5.843 25 O -0.210 6.210 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.005 0.995 31 H 0.267 0.733 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.186 0.814 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 -30.995 2.202 32.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.327 5.327 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.304 3.696 13 O -0.459 6.459 14 C -0.293 4.293 15 S 0.374 5.626 16 C -0.191 4.191 17 N -0.150 5.150 18 N -0.130 5.130 19 C 0.029 3.971 20 C -0.309 4.309 21 C -0.086 4.086 22 C -0.175 4.175 23 C -0.304 4.304 24 S 0.422 5.578 25 O -0.092 6.092 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.023 0.977 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.203 0.797 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.266 -30.087 2.245 31.283 hybrid contribution -1.222 0.389 -0.681 1.452 sum -9.487 -29.698 1.564 31.216 Atomic orbital electron populations 1.22075 0.77320 1.04462 1.03219 1.48054 1.08696 1.05853 1.70087 1.18882 0.91396 0.79673 0.96309 1.21688 1.36968 1.06649 0.92985 0.92652 1.25829 0.94911 0.96467 1.01849 1.70037 1.38810 1.14771 1.32945 0.85429 0.78030 0.78217 0.79227 1.18901 1.20717 1.19789 1.19876 0.87283 0.85136 0.77276 1.90709 1.15485 1.87344 1.52383 1.23901 1.01850 0.91998 1.11535 1.87052 0.99188 0.86363 1.90005 1.30502 0.97330 0.87774 1.03514 1.74822 1.04266 1.15961 1.19986 1.74498 1.25826 0.94413 1.18221 1.24598 0.78096 0.94572 0.99835 1.21439 1.00461 0.87334 1.21636 1.21033 0.97337 0.94588 0.95623 1.20384 0.99175 0.93730 1.04194 1.26536 0.95413 1.03876 1.04605 1.84646 1.07513 0.95210 1.70409 1.85052 1.35596 1.17120 1.71414 0.90451 0.90795 0.88866 0.95092 0.97685 0.92363 0.83608 0.83076 0.82231 0.79711 0.77308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.01 10.24 127.77 1.31 3.32 16 2 N -0.60 -24.21 2.86 -851.12 -2.43 -26.64 16 3 C 0.26 13.51 5.16 85.63 0.44 13.95 16 4 C -0.54 -30.69 9.39 25.60 0.24 -30.45 16 5 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.50 5.46 84.66 0.46 0.96 16 7 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 8 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 C 0.52 20.56 7.69 87.66 0.67 21.24 16 13 O -0.58 -28.44 15.44 -3.03 -0.05 -28.48 16 14 C -0.14 -3.99 4.26 71.24 0.30 -3.68 16 15 S 0.15 4.25 21.45 -56.49 -1.21 3.04 16 16 C 0.13 3.62 8.53 130.34 1.11 4.73 16 17 N -0.30 -8.87 11.61 -171.86 -2.00 -10.86 16 18 N -0.28 -8.13 12.21 -166.36 -2.03 -10.17 16 19 C 0.24 6.28 8.23 87.08 0.72 7.00 16 20 C -0.19 -3.61 6.46 24.10 0.16 -3.46 16 21 C -0.05 -0.67 10.13 21.69 0.22 -0.45 16 22 C -0.15 -1.06 10.15 21.13 0.21 -0.84 16 23 C -0.17 -1.08 11.21 66.77 0.75 -0.33 16 24 S 0.16 2.14 23.31 -56.49 -1.32 0.82 16 25 O -0.21 -5.91 10.93 -16.22 -0.18 -6.09 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 2.19 8.07 -2.38 -0.02 2.17 16 28 H 0.09 2.03 6.44 -2.39 -0.02 2.01 16 29 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 30 H 0.01 0.30 7.42 -2.39 -0.02 0.28 16 31 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.15 3.56 7.40 -2.39 -0.02 3.54 16 33 H 0.15 3.47 8.11 -2.39 -0.02 3.45 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.19 0.17 8.06 -2.91 -0.02 0.14 16 36 H 0.21 -0.13 8.06 -2.91 -0.02 -0.15 16 Total: -1.00 -76.06 352.79 0.83 -75.23 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 1.13 Total: -0.42 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 6.60 Total: 11.97 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -6.17 Total: -102.56 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.22 Total: -34.57 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -2.53 Total: 3.86 kcal Total: -76.06 0.83 -75.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006169297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.285 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds