Wall clock time and date at job start Tue Mar 31 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99792 * 2 1 4 4 H 1.48510 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46997 * 299.99493 * 3 2 1 6 6 H 1.48496 * 109.47405 * 60.00152 * 3 2 1 7 7 C 1.38809 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00336 * 179.97438 * 7 2 1 9 9 O 1.34864 * 120.00006 * 359.72904 * 7 2 1 10 10 C 1.34733 * 116.99999 * 180.02562 * 9 7 2 11 11 O 1.21513 * 119.99963 * 359.97438 * 10 9 7 12 12 C 1.47663 * 119.99751 * 180.02562 * 10 9 7 13 13 C 1.39684 * 120.15426 * 353.34958 * 12 10 9 14 14 C 1.37909 * 119.84612 * 179.97438 * 13 12 10 15 15 C 1.38397 * 120.14942 * 0.02562 * 14 13 12 16 16 C 1.38348 * 120.31462 * 359.97438 * 15 14 13 17 17 C 1.37961 * 120.15342 * 359.74405 * 16 15 14 18 18 S 1.76195 * 120.08008 * 180.25223 * 17 16 15 19 19 O 1.42100 * 106.40030 * 125.81709 * 18 17 16 20 20 O 1.42095 * 106.40429 * 258.73351 * 18 17 16 21 21 N 1.65601 * 107.21934 * 12.27560 * 18 17 16 22 22 C 1.46921 * 120.63003 * 263.43122 * 21 18 17 23 23 C 1.53624 * 108.54195 * 126.36872 * 22 21 18 24 24 C 1.53051 * 109.24082 * 54.85850 * 23 22 21 25 25 C 1.53040 * 109.53326 * 298.50935 * 24 23 22 26 26 C 1.46926 * 120.63087 * 83.71254 * 21 18 17 27 27 H 0.96994 * 119.99755 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.07723 * 359.96221 * 13 12 10 29 29 H 1.07993 * 119.92545 * 180.02562 * 14 13 12 30 30 H 1.08003 * 119.84622 * 179.97438 * 15 14 13 31 31 H 1.08008 * 119.92950 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.58845 * 246.20032 * 22 21 18 33 33 H 1.08990 * 109.58910 * 6.62524 * 22 21 18 34 34 H 1.08991 * 109.63677 * 294.86867 * 23 22 21 35 35 H 1.08997 * 109.46106 * 174.73804 * 23 22 21 36 36 H 1.08999 * 109.45942 * 178.49455 * 24 23 22 37 37 H 1.08996 * 109.45023 * 58.52539 * 24 23 22 38 38 H 1.09000 * 109.50240 * 301.41226 * 25 24 23 39 39 H 1.09001 * 109.49296 * 181.31744 * 25 24 23 40 40 H 1.09003 * 109.58618 * 353.37756 * 26 21 18 41 41 H 1.09004 * 109.59005 * 113.79546 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0083 -1.2021 0.0005 8 1 3.0883 -1.2022 0.0001 9 8 1.3340 -2.3701 0.0066 10 6 2.0678 -3.5000 0.0073 11 8 3.2812 -3.4364 0.0021 12 6 1.3974 -4.8157 0.0132 13 6 0.0103 -4.8958 0.1579 14 6 -0.6093 -6.1278 0.1620 15 6 0.1400 -7.2832 0.0237 16 6 1.5141 -7.2113 -0.1200 17 6 2.1465 -5.9852 -0.1317 18 16 3.8959 -5.8956 -0.3216 19 8 4.1363 -5.0271 -1.4202 20 8 4.4295 -5.6729 0.9764 21 7 4.4157 -7.3967 -0.7896 22 6 4.9342 -8.3514 0.1995 23 6 4.1592 -9.6703 0.0584 24 6 4.2491 -10.1556 -1.3903 25 6 3.6093 -9.1198 -2.3176 26 6 4.3728 -7.7968 -2.2027 27 1 -0.4849 0.8400 -0.0004 28 1 -0.5755 -3.9949 0.2666 29 1 -1.6816 -6.1912 0.2734 30 1 -0.3503 -8.2455 0.0280 31 1 2.0927 -8.1169 -0.2279 32 1 5.9947 -8.5262 0.0176 33 1 4.7950 -7.9496 1.2030 34 1 3.1144 -9.5114 0.3246 35 1 4.5936 -10.4193 0.7206 36 1 3.7229 -11.1051 -1.4885 37 1 5.2956 -10.2905 -1.6636 38 1 2.5695 -8.9661 -2.0290 39 1 3.6527 -9.4768 -3.3466 40 1 3.8630 -7.0289 -2.7846 41 1 5.3884 -7.9273 -2.5766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006651813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:01 Heat of formation + Delta-G solvation = -118.806825 kcal Electronic energy + Delta-G solvation = -28497.976186 eV Core-core repulsion = 24470.541575 eV Total energy + Delta-G solvation = -4027.434611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.67652 -38.71400 -38.12657 -36.57999 -35.57206 -34.94821 -32.53155 -32.37518 -31.22958 -31.13599 -31.10636 -25.84318 -24.63158 -23.70657 -23.44155 -22.87835 -21.07252 -20.09730 -18.61737 -18.18508 -17.88830 -16.98045 -16.68309 -15.79128 -15.50253 -15.04800 -14.76186 -14.72755 -14.56366 -14.52632 -14.29034 -14.21620 -13.84467 -13.75411 -13.54669 -12.76092 -12.67771 -12.55563 -12.18116 -11.77315 -11.67047 -11.56371 -11.48029 -11.44430 -11.35179 -11.21741 -11.08439 -10.77327 -10.57162 -10.50019 -10.44338 -10.33450 -9.94442 -9.30222 -9.22410 -9.06017 -8.86033 -8.71019 -6.59756 -4.18033 0.73862 0.80642 1.25083 3.03832 3.14468 3.22538 3.26870 3.28431 3.79727 4.03646 4.22501 4.32815 4.51697 4.58198 4.61689 4.80771 4.85304 5.01368 5.03392 5.05129 5.13406 5.18499 5.22283 5.33124 5.47864 5.54378 5.62528 5.64027 5.72130 5.77009 5.78125 5.81326 5.83522 6.07310 6.14896 6.19401 6.29984 6.42330 6.62844 6.64631 6.92631 7.28133 7.78964 8.53029 8.88293 9.60926 10.56960 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.003890 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.730439 B = 7195.707524 C = 8097.201065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.041 3.959 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.366 4.366 8 H 0.106 0.894 9 O -0.188 6.188 10 C 0.404 3.596 11 O -0.536 6.536 12 C 0.012 3.988 13 C -0.091 4.091 14 C -0.081 4.081 15 C -0.132 4.132 16 C -0.053 4.053 17 C -0.635 4.635 18 S 2.708 3.292 19 O -0.927 6.927 20 O -0.946 6.946 21 N -1.011 6.011 22 C 0.114 3.886 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.140 4.140 26 C 0.119 3.881 27 H 0.274 0.726 28 H 0.151 0.849 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 -21.121 -2.317 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.165 4.165 3 Si 0.773 3.227 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.441 4.441 8 H 0.124 0.876 9 O -0.094 6.094 10 C 0.253 3.747 11 O -0.435 6.435 12 C 0.009 3.991 13 C -0.110 4.110 14 C -0.100 4.100 15 C -0.151 4.151 16 C -0.072 4.072 17 C -0.719 4.719 18 S 2.795 3.205 19 O -0.917 6.917 20 O -0.936 6.936 21 N -0.850 5.850 22 C -0.011 4.011 23 C -0.179 4.179 24 C -0.154 4.154 25 C -0.179 4.179 26 C -0.007 4.007 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.552 -20.150 -2.181 20.428 hybrid contribution -0.572 0.378 0.000 0.685 sum 1.981 -19.773 -2.181 19.991 Atomic orbital electron populations 1.69983 1.06208 1.28287 1.44167 1.25490 0.95962 0.99217 0.95814 0.85505 0.79785 0.79158 0.78290 1.18451 1.19858 1.19890 1.21612 0.93109 0.79316 1.50073 0.87628 1.83844 1.38980 1.13176 1.73397 1.20737 0.86115 0.85693 0.82177 1.90628 1.14525 1.86561 1.51834 1.18944 0.93999 0.89823 0.96315 1.21749 0.93520 0.99190 0.96538 1.21385 1.00292 0.92222 0.96051 1.21311 0.93960 0.98678 1.01110 1.20899 0.95466 0.95293 0.95507 1.31122 1.28171 0.97890 1.14724 1.02043 0.73227 0.70792 0.74422 1.93580 1.83533 1.59813 1.54780 1.93521 1.76898 1.82881 1.40334 1.58302 1.77889 1.34820 1.13952 1.21568 0.98210 0.88971 0.92389 1.22090 1.01122 0.97275 0.97367 1.21475 1.01283 0.98021 0.94658 1.22004 1.00149 0.95520 1.00250 1.21418 1.01445 0.97022 0.80767 0.91636 0.83175 0.84903 0.85305 0.84503 0.90833 0.88700 0.91439 0.90614 0.91833 0.91626 0.91342 0.90641 0.89193 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.35 13.67 55.49 0.76 -23.59 16 2 C 0.04 1.15 5.50 -17.52 -0.10 1.05 16 3 Si 0.95 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.26 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.37 -11.04 9.65 30.94 0.30 -10.74 16 8 H 0.11 3.24 6.86 -52.49 -0.36 2.88 16 9 O -0.19 -5.57 9.02 -21.67 -0.20 -5.76 16 10 C 0.40 11.12 7.67 34.58 0.27 11.38 16 11 O -0.54 -15.89 11.12 -29.65 -0.33 -16.21 16 12 C 0.01 0.27 5.87 -104.98 -0.62 -0.35 16 13 C -0.09 -1.69 9.62 -39.16 -0.38 -2.06 16 14 C -0.08 -1.13 10.03 -39.64 -0.40 -1.53 16 15 C -0.13 -1.63 10.04 -39.48 -0.40 -2.03 16 16 C -0.05 -0.75 9.48 -39.64 -0.38 -1.13 16 17 C -0.63 -12.09 5.86 -39.16 -0.23 -12.32 16 18 S 2.71 54.07 3.98 -107.50 -0.43 53.64 16 19 O -0.93 -22.03 14.61 -67.00 -0.98 -23.01 16 20 O -0.95 -21.53 15.95 -64.65 -1.03 -22.56 16 21 N -1.01 -13.63 2.26 -113.28 -0.26 -13.89 16 22 C 0.11 1.21 6.41 -3.49 -0.02 1.19 16 23 C -0.14 -1.07 5.78 -26.38 -0.15 -1.22 16 24 C -0.12 -0.80 5.88 -26.68 -0.16 -0.96 16 25 C -0.14 -1.12 5.91 -26.61 -0.16 -1.28 16 26 C 0.12 1.30 6.35 -3.71 -0.02 1.28 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.15 2.86 7.63 -52.48 -0.40 2.46 16 29 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 31 H 0.14 1.48 3.43 -52.48 -0.18 1.30 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.10 6.95 -51.93 -0.36 0.74 16 34 H 0.07 0.51 6.14 -51.93 -0.32 0.19 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.55 6.83 -51.93 -0.35 0.20 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 1.08 7.31 -51.93 -0.38 0.70 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -38.04 343.97 -9.61 -47.65 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.87 Total: 0.99 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.44 Total: -18.72 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.50 Total: -37.47 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: -2.53 Total: -67.55 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 54.07 SS G_CDS: -0.43 Total: 53.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.04 -9.61 -47.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006651813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.157 kcal (2) G-P(sol) polarization free energy of solvation -38.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds