Wall clock time and date at job start Tue Mar 31 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47340 * 2 1 4 4 C 1.35943 * 117.00363 * 180.02562 * 3 2 1 5 5 C 1.38563 * 120.08344 * 359.97340 * 4 3 2 6 6 C 1.38237 * 120.01364 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.90976 * 180.02562 * 6 5 4 8 8 H 1.09000 * 110.69169 * 31.82586 * 7 6 5 9 9 N 1.48013 * 110.77860 * 155.32890 * 7 6 5 10 10 C 1.45921 * 114.97908 * 143.08173 * 9 7 6 11 11 H 1.09000 * 108.75355 * 238.02962 * 10 9 7 12 12 C 1.50694 * 108.76281 * 119.94645 * 10 9 7 13 13 O 1.20821 * 120.00382 * 336.39201 * 12 10 9 14 14 O 1.34233 * 119.99738 * 156.38875 * 12 10 9 15 15 C 1.54544 * 113.13011 * 358.98219 * 10 9 7 16 16 S 1.84073 * 110.77596 * 268.54293 * 7 6 5 17 17 C 1.38326 * 120.18480 * 359.97438 * 6 5 4 18 18 C 1.38158 * 120.16949 * 359.97438 * 17 6 5 19 19 C 1.38763 * 119.98445 * 0.02562 * 18 17 6 20 20 O 1.35796 * 120.09163 * 179.97438 * 19 18 17 21 21 C 1.34815 * 116.99877 * 354.39847 * 20 19 18 22 22 H 1.08002 * 119.99948 * 5.04945 * 21 20 19 23 23 C 1.38639 * 119.99947 * 185.04727 * 21 20 19 24 24 N 1.31575 * 119.99890 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00068 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47008 * 90.00294 * 25 23 21 27 27 H 1.48507 * 109.46948 * 210.00239 * 25 23 21 28 28 H 1.48496 * 109.46845 * 329.99823 * 25 23 21 29 29 H 1.09002 * 109.46679 * 300.00158 * 1 2 3 30 30 H 1.08996 * 109.47440 * 59.99785 * 1 2 3 31 31 H 1.08997 * 109.47298 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47332 * 239.99618 * 2 1 3 33 33 H 1.09004 * 109.47287 * 119.99935 * 2 1 3 34 34 H 1.08001 * 119.99286 * 0.02562 * 5 4 3 35 35 H 1.00901 * 110.99465 * 270.10617 * 9 7 6 36 36 H 0.96696 * 116.99937 * 180.02562 * 14 12 10 37 37 H 1.08995 * 111.04006 * 218.79017 * 15 10 9 38 38 H 1.09005 * 111.06945 * 94.86787 * 15 10 9 39 39 H 1.08002 * 119.91324 * 180.02562 * 17 6 5 40 40 H 1.07994 * 120.00559 * 180.27328 * 18 17 6 41 41 H 0.96998 * 119.99911 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3541 1.5254 -0.0005 5 6 4.1998 0.4278 -0.0005 6 6 5.5700 0.6106 -0.0005 7 6 6.4876 -0.5848 -0.0011 8 1 6.0348 -1.4177 -0.5391 9 7 7.8048 -0.2354 -0.5786 10 6 8.9480 -0.8802 0.0591 11 1 9.6265 -0.1093 0.4243 12 6 9.6726 -1.7098 -0.9693 13 8 9.0865 -2.1038 -1.9497 14 8 10.9692 -2.0109 -0.7962 15 6 8.5490 -1.7918 1.2416 16 16 6.9200 -1.0768 1.7192 17 6 6.1012 1.8878 -0.0011 18 6 5.2651 2.9876 -0.0022 19 6 3.8886 2.8122 -0.0022 20 8 3.0647 3.8917 -0.0028 21 6 3.6436 5.1035 0.1139 22 1 4.7202 5.1893 0.1203 23 6 2.8570 6.2397 0.2258 24 7 1.5455 6.1351 0.2185 25 14 3.6592 7.9188 0.3882 26 1 3.8697 8.4995 -0.9622 27 1 2.7778 8.8140 1.1801 28 1 4.9677 7.7778 1.0759 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.7883 -0.5708 -0.0005 35 1 7.8140 -0.3875 -1.5761 36 1 11.3912 -2.5451 -1.4829 37 1 9.2665 -1.7102 2.0580 38 1 8.4423 -2.8276 0.9193 39 1 7.1724 2.0255 -0.0015 40 1 5.6827 3.9835 -0.0071 41 1 0.9951 6.9300 0.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006656598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:50 Heat of formation + Delta-G solvation = -136.080576 kcal Electronic energy + Delta-G solvation = -26697.562550 eV Core-core repulsion = 22669.378893 eV Total energy + Delta-G solvation = -4028.183657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 10.84 seconds Orbital eigenvalues (eV) -41.68319 -41.27363 -39.31919 -38.65143 -37.46328 -36.79966 -34.33097 -32.95077 -32.36270 -30.89979 -29.71601 -27.72014 -26.89657 -25.17683 -24.72441 -22.67837 -22.37227 -21.53381 -19.84149 -19.45063 -19.40775 -18.79002 -17.85749 -17.46120 -17.14714 -16.99110 -16.84029 -16.27952 -15.76370 -15.63963 -15.50522 -15.42645 -15.25617 -14.84338 -14.67050 -14.16816 -13.89581 -13.73855 -13.64015 -13.46163 -13.31896 -13.26487 -12.79257 -12.73403 -12.67951 -12.58725 -12.26568 -12.13671 -12.05697 -11.87711 -11.53057 -11.31166 -11.15537 -10.74471 -9.90833 -9.48172 -8.92112 -8.60652 -8.42273 -6.07948 0.11861 0.59034 0.80597 1.00325 1.21835 1.37300 1.47922 1.55523 1.84475 2.20412 2.46151 2.61489 2.87027 3.16200 3.19433 3.41711 3.71876 3.86442 3.94427 4.07099 4.10494 4.12887 4.22549 4.35266 4.38554 4.44535 4.54092 4.60498 4.61207 4.87550 4.93769 4.96395 5.16394 5.21534 5.36497 5.37301 5.46679 5.61736 5.78348 5.89866 5.99398 6.04887 6.66120 6.82842 7.01268 7.83556 8.80669 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.003176 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.495683 B = 8813.598720 C =10520.822466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.340 6.340 4 C 0.044 3.956 5 C -0.142 4.142 6 C -0.120 4.120 7 C 0.215 3.785 8 H 0.091 0.909 9 N -0.678 5.678 10 C 0.102 3.898 11 H 0.148 0.852 12 C 0.477 3.523 13 O -0.544 6.544 14 O -0.499 6.499 15 C -0.066 4.066 16 S -0.288 6.288 17 C -0.048 4.048 18 C -0.217 4.217 19 C 0.095 3.905 20 O -0.219 6.219 21 C -0.412 4.412 22 H 0.105 0.895 23 C -0.024 4.024 24 N -0.919 5.919 25 Si 1.019 2.981 26 H -0.263 1.263 27 H -0.273 1.273 28 H -0.250 1.250 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.148 0.852 35 H 0.366 0.634 36 H 0.431 0.569 37 H 0.154 0.846 38 H 0.105 0.895 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.005 -18.886 -0.011 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.255 6.255 4 C -0.001 4.001 5 C -0.163 4.163 6 C -0.124 4.124 7 C -0.003 4.003 8 H 0.109 0.891 9 N -0.317 5.317 10 C -0.010 4.010 11 H 0.165 0.835 12 C 0.318 3.682 13 O -0.435 6.435 14 O -0.312 6.312 15 C -0.215 4.215 16 S -0.059 6.059 17 C -0.068 4.068 18 C -0.236 4.236 19 C 0.044 3.956 20 O -0.126 6.126 21 C -0.488 4.488 22 H 0.122 0.878 23 C -0.222 4.222 24 N -0.557 5.557 25 Si 0.838 3.162 26 H -0.188 1.188 27 H -0.198 1.198 28 H -0.174 1.174 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.165 0.835 35 H 0.191 0.809 36 H 0.294 0.706 37 H 0.172 0.828 38 H 0.123 0.877 39 H 0.167 0.833 40 H 0.148 0.852 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.608 -17.931 1.509 23.821 hybrid contribution 0.514 -0.499 -1.944 2.072 sum 16.122 -18.431 -0.436 24.491 Atomic orbital electron populations 1.21786 0.91982 1.04081 1.02517 1.23004 0.96786 0.81316 1.01805 1.86205 1.18881 1.30642 1.89809 1.18319 0.83165 0.91426 1.07202 1.20737 0.93005 0.96862 1.05673 1.18711 0.91380 0.93549 1.08715 1.22679 0.90100 0.96183 0.91352 0.89122 1.60148 0.99661 1.61257 1.10632 1.22048 0.92569 0.95623 0.90791 0.83500 1.24091 0.81019 0.77339 0.85794 1.90754 1.68508 1.52232 1.31976 1.84493 1.24102 1.68241 1.54355 1.24678 0.95952 1.00986 0.99880 1.88874 1.24699 1.77002 1.15322 1.20739 1.00084 0.89997 0.95988 1.21108 0.91077 1.00796 1.10655 1.19389 0.90908 0.86757 0.98582 1.84033 1.34405 1.13120 1.81029 1.21903 0.93594 0.81153 1.52175 0.87797 1.26625 0.95942 1.03640 0.95949 1.70237 1.05531 1.31431 1.48546 0.84582 0.78221 0.74220 0.79141 1.18756 1.19783 1.17351 0.92888 0.92708 0.87048 0.91101 0.91439 0.83451 0.80948 0.70605 0.82814 0.87685 0.83335 0.85240 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 10.28 71.98 0.74 -3.22 16 2 C 0.05 1.43 5.46 71.98 0.39 1.82 16 3 O -0.34 -15.66 9.92 -79.11 -0.79 -16.45 16 4 C 0.04 2.01 6.70 22.61 0.15 2.16 16 5 C -0.14 -5.05 8.71 22.35 0.19 -4.85 16 6 C -0.12 -3.90 5.20 -19.84 -0.10 -4.01 16 7 C 0.21 5.26 4.02 85.34 0.34 5.60 16 8 H 0.09 2.07 8.12 -2.39 -0.02 2.05 16 9 N -0.68 -13.90 5.30 -482.10 -2.56 -16.45 16 10 C 0.10 1.47 3.71 44.88 0.17 1.64 16 11 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 12 C 0.48 6.64 7.23 71.23 0.52 7.16 16 13 O -0.54 -11.28 16.41 21.98 0.36 -10.92 16 14 O -0.50 -3.93 13.42 -51.44 -0.69 -4.62 16 15 C -0.07 -0.86 7.03 72.51 0.51 -0.35 16 16 S -0.29 -6.66 22.88 -56.49 -1.29 -7.95 16 17 C -0.05 -1.71 9.35 22.27 0.21 -1.50 16 18 C -0.22 -9.64 9.16 22.38 0.21 -9.44 16 19 C 0.10 4.97 6.66 22.66 0.15 5.12 16 20 O -0.22 -13.80 9.54 -9.30 -0.09 -13.89 16 21 C -0.41 -24.61 9.49 67.92 0.64 -23.96 16 22 H 0.10 5.62 5.21 -2.91 -0.02 5.61 16 23 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 24 N -0.92 -58.26 13.67 21.61 0.30 -57.96 16 25 Si 1.02 43.72 29.55 68.60 2.03 45.75 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 1.92 7.66 -2.39 -0.02 1.90 16 33 H 0.07 1.88 7.66 -2.38 -0.02 1.86 16 34 H 0.15 4.26 6.30 -2.91 -0.02 4.24 16 35 H 0.37 7.73 7.17 -89.69 -0.64 7.09 16 36 H 0.43 0.06 9.10 -74.06 -0.67 -0.61 16 37 H 0.15 1.22 8.14 -2.39 -0.02 1.21 16 38 H 0.10 1.19 7.85 -2.38 -0.02 1.17 16 39 H 0.15 4.52 7.30 -2.91 -0.02 4.50 16 40 H 0.13 5.76 5.64 -2.91 -0.02 5.74 16 41 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -82.14 361.57 1.64 -80.49 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.21 Total: 26.76 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.58 Total: -24.77 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -2.26 Total: -74.42 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.20 Total: -45.86 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -1.29 Total: -7.95 kcal Total: -82.14 1.64 -80.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006656598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.590 kcal (2) G-P(sol) polarization free energy of solvation -82.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.84 seconds